Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

20995923 .. 20996894

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG183900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTGGAACTTTATGAACAAAATAGAGCTCCAGCTTCCAACGAAGTGGAAGGAAGTACAGCTAGTGGTGCTAGTCATCGGGCCCCGCCAAAAGGTACAGCTAGCAATGAAGAACATGCTACAAGACCTGGAACCTTAAAATCTTCATCATCTAGACCAGCTTCTGAGCATTCAGATGTTGACAATGGTGATGGACCCCCTAGAACCACCCAAAGTCGAAATAATGACTACAGAAGTACAGAAACGAATAATGCTTCTGACCAAAATGTGGATGTTGAATGCAAAGATAATCAGCACCCCAGACCAATGTCATCCCACCAGGAAAAAGGAGGACAATCTCAAAATGCATCAAAATTTGCATCAGATGGATGTGGTGAAGGTCAAGATAATAATGGGACATGCGAAACAAGAGAAGCAGGGGAATTGCAGGACAAACAATTTGATCGAAGTGTGGAGAATAGAACAGGTGCACTTGGCCAGTCACCTCAGGATGTTATAAAAAAGATTGATAGAAACAAGGTGAAGGCAGCGCTGGAGAAACGTAGGAAGTCTCAGGGTGATATGGCTCGAAAGAAAGATTTGATGGATGAAGATGATCTCATTGAGAGGGAACTGGAAGATGGTATTGAACTTGCTGCTGGGAGTCAAAGCCGGTCAAAGCCCTCAAATGGACCAGAACATGAGAACATACATGACGGAAAACATCAAGACAGTGTTGGGTATGGTGGAACTGATATAAATACTGTGGAAGAAGGTGAGGTATCTGCACATGATGATGGTGGCCAGGGATACCAATCACCCAAACGCAAGGCAGAAAGCCCGAACCTCGATGCTGTAGAGAAGAAGCAGCGTCGTGATTATGAGCCTGGAACCTCCCACCATAATGGGTTTGATTATGGAGAAGATCATGGCAGGAGGGTTGGACACTCAGAAAGGGATCAGAAAAGGCAAGCACAGGAGAATCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

323

Amino Acids

35.45

Weight (kDa)

5.37

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	268
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	945
AcoI	YGGCCR	2 cut(s)	475, 781
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	3 cut(s)	58, 97, 238
AfeI	AGCGCT	1 cut(s)	531
AfiI	CCNNNNNNNGG	3 cut(s)	92, 268, 668
AgsI	TTSAA	2 cut(s)	278, 629
AjnI	CCWGG	4 cut(s)	127, 318, 783, 865
AluBI	AGCT	5 cut(s)	29, 35, 62, 101, 161
AluI	AGCT	5 cut(s)	29, 35, 62, 101, 161
Alw21I	GWGCWC	2 cut(s)	31, 472
Alw26I	GTCTC	1 cut(s)	555
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	945
AlwNI	CAGNNNCTG	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	531
AoxI	GGCC	3 cut(s)	81, 475, 781
ApaI	GGGCCC	1 cut(s)	85
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	527, 635, 847
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	4 cut(s)	81, 82, 194, 671
AsuHPI	GGTGA	7 cut(s)	200, 386, 474, 532, 569, 767, 789
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	194, 671
AxyI	CCTNAGG	1 cut(s)	486
BaeGI	GKGCMC	2 cut(s)	85, 472
BalI	TGGCCA	2 cut(s)	477, 783
BanII	GRGCYC	2 cut(s)	31, 85
Bbv12I	GWGCWC	2 cut(s)	31, 472
BbvI	GCAGC	3 cut(s)	539, 622, 859
BccI	CCATC	5 cut(s)	185, 359, 577, 614, 770
BciT130I	CCWGG	4 cut(s)	129, 320, 785, 867
BciVI	GTATCC	1 cut(s)	782
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	5 cut(s)	63, 72, 102, 153, 201
BfmI	CTRYAG	2 cut(s)	229, 834
BfoI	RGCGCY	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	782
BisI	GCNGC	3 cut(s)	528, 636, 848
BlsI	GCNGC	3 cut(s)	529, 637, 849
Bme1390I	CCNGG	4 cut(s)	129, 320, 785, 867
Bme18I	GGWCC	2 cut(s)	194, 671
BmgT120I	GGNCC	4 cut(s)	81, 82, 194, 671
BmiI	GGNNCC	5 cut(s)	83, 84, 133, 196, 871
BmrFI	CCNGG	4 cut(s)	129, 320, 785, 867
BmsI	GCATC	3 cut(s)	356, 368, 820
BmtI	GCTAGC	1 cut(s)	105
BoxI	GACNNNNGTC	1 cut(s)	307
BpmI	CTGGAG	2 cut(s)	15, 554
BsaBI	GATNNNNATC	1 cut(s)	793
BsaJI	CCNNGG	1 cut(s)	784
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 268, 668
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	2 cut(s)	478, 618
Bse21I	CCTNAGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	793
BseBI	CCWGG	4 cut(s)	129, 320, 785, 867
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	5 cut(s)	277, 311, 374, 496, 592
BseJI	GATNNNNATC	1 cut(s)	793
BseLI	CCNNNNNNNGG	3 cut(s)	92, 268, 668
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	4 cut(s)	156, 500, 566, 942
BseNI	ACTGG	2 cut(s)	478, 618
BseSI	GKGCMC	2 cut(s)	85, 472
BseXI	GCAGC	3 cut(s)	539, 622, 859
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	83, 477, 783
BsiHKAI	GWGCWC	2 cut(s)	31, 472
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	3 cut(s)	92, 268, 668
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	2 cut(s)	169, 284
BsnI	GGCC	3 cut(s)	83, 477, 783
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	3 cut(s)	31, 85, 472
Bsp143I	GATC	4 cut(s)	442, 595, 904, 937
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	3 cut(s)	83, 477, 783
BspCNI	CTCAG	4 cut(s)	157, 499, 565, 941
BspLI	GGNNCC	5 cut(s)	83, 84, 133, 196, 871
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	945
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	478, 618
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	4 cut(s)	442, 595, 904, 937
Bst2UI	CCWGG	4 cut(s)	129, 320, 785, 867
Bst4CI	ACNGT	2 cut(s)	713, 745
BstC8I	GCNNGC	2 cut(s)	103, 951
BstDEI	CTNAG	4 cut(s)	165, 486, 552, 928
BstF5I	GGATG	5 cut(s)	277, 311, 374, 496, 592
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	4 cut(s)	445, 598, 907, 940
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	4 cut(s)	442, 595, 904, 937
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	4 cut(s)	129, 320, 785, 867
BstNSI	RCATGY	2 cut(s)	119, 402
BstPAI	GACNNNNGTC	1 cut(s)	307
BstSCI	CCNGG	4 cut(s)	127, 318, 783, 865
BstSFI	CTRYAG	2 cut(s)	229, 834
BstSLI	GKGCMC	2 cut(s)	85, 472
BstV1I	GCAGC	3 cut(s)	539, 622, 859
BstXI	CCANNNNNNTGG	2 cut(s)	46, 884
Bsu36I	CCTNAGG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	3 cut(s)	83, 477, 783
BtsCI	GGATG	5 cut(s)	277, 311, 374, 496, 592
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	103, 951
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	651
Cfr13I	GGNCC	4 cut(s)	81, 82, 194, 671
CseI	GACGC	1 cut(s)	839
Csp6I	GTAC	3 cut(s)	57, 96, 237
CviAII	CATG	7 cut(s)	116, 399, 680, 692, 770, 908, 965
CviQI	GTAC	3 cut(s)	57, 96, 237
DdeI	CTNAG	4 cut(s)	165, 486, 552, 928
DpnI	GATC	4 cut(s)	444, 597, 906, 939
DpnII	GATC	4 cut(s)	442, 595, 904, 937
EaeI	YGGCCR	2 cut(s)	475, 781
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	2 cut(s)	31, 85
Eco47I	GGWCC	2 cut(s)	194, 671
Eco47III	AGCGCT	1 cut(s)	531
Eco53kI	GAGCTC	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	4 cut(s)	127, 318, 783, 865
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	31, 85
FaeI	CATG	7 cut(s)	119, 402, 683, 695, 773, 911, 968
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	7 cut(s)	115, 398, 679, 691, 769, 907, 964
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	528, 636, 848
FokI	GGATG	5 cut(s)	284, 298, 381, 503, 599
FriOI	GRGCYC	2 cut(s)	31, 85
Fsp4HI	GCNGC	3 cut(s)	528, 636, 848
FspBI	CTAG	5 cut(s)	63, 72, 102, 153, 201
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	3 cut(s)	528, 636, 848
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	2 cut(s)	15, 554
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	83, 477, 783
HapII	CCGG	1 cut(s)	652
HgaI	GACGC	1 cut(s)	839
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	7 cut(s)	119, 402, 683, 695, 773, 911, 968
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	643, 961
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	7 cut(s)	200, 386, 474, 532, 569, 767, 789
Hpy166II	GTNNAC	2 cut(s)	181, 470
Hpy188I	TCNGA	6 cut(s)	166, 175, 259, 364, 931, 942
Hpy188III	TCNNGA	5 cut(s)	153, 383, 488, 707, 854
Hpy8I	GTNNAC	2 cut(s)	181, 470
Hpy99I	CGWCG	1 cut(s)	855
HpyAV	CCTTC	4 cut(s)	44, 371, 517, 746
HpyCH4III	ACNGT	2 cut(s)	713, 745
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	6 cut(s)	282, 347, 359, 427, 470, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	4 cut(s)	165, 486, 552, 928
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	7 cut(s)	119, 402, 683, 695, 773, 911, 968
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	4 cut(s)	442, 595, 904, 937
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	3 cut(s)	539, 622, 859
LweI	GCATC	3 cut(s)	356, 368, 820
MaeI	CTAG	5 cut(s)	63, 72, 102, 153, 201
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	4 cut(s)	444, 597, 906, 939
MboI	GATC	4 cut(s)	442, 595, 904, 937
MboII	GAAGA	7 cut(s)	122, 135, 602, 629, 761, 853, 914
MhlI	GDGCHC	3 cut(s)	31, 85, 472
MlsI	TGGCCA	2 cut(s)	477, 783
MluCI	AATT	3 cut(s)	353, 422, 437
MluNI	TGGCCA	2 cut(s)	477, 783
MlyI	GAGTC	1 cut(s)	652
MmeI	TCCRAC	2 cut(s)	63, 901
MnlI	CCTC	8 cut(s)	323, 495, 600, 673, 751, 836, 883, 909
Mox20I	TGGCCA	2 cut(s)	477, 783
Mph1103I	ATGCAT	1 cut(s)	349
MscI	TGGCCA	2 cut(s)	477, 783
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	3 cut(s)	174, 774, 882
Msp20I	TGGCCA	2 cut(s)	477, 783
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	4 cut(s)	129, 320, 785, 867
Mva1269I	GAATGC	2 cut(s)	169, 284
MvaI	CCWGG	4 cut(s)	129, 320, 785, 867
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	4 cut(s)	442, 595, 904, 937
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	7 cut(s)	119, 402, 683, 695, 773, 911, 968
NlaIV	GGNNCC	5 cut(s)	83, 84, 133, 196, 871
NmuCI	GTSAC	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	2 cut(s)	119, 402
PctI	GAATGC	2 cut(s)	169, 284
PfeI	GAWTC	1 cut(s)	961
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	529, 637, 849
PleI	GAGTC	1 cut(s)	651
PpsI	GAGTC	1 cut(s)	651
PshAI	GACNNNNGTC	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	4 cut(s)	127, 318, 783, 865
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	4 cut(s)	127, 318, 783, 865
PspN4I	GGNNCC	5 cut(s)	83, 84, 133, 196, 871
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	4 cut(s)	81, 82, 194, 671
PstNI	CAGNNNCTG	1 cut(s)	164
RsaI	GTAC	3 cut(s)	58, 97, 238
RsaNI	GTAC	3 cut(s)	57, 96, 237
RseI	CAYNNNNRTG	3 cut(s)	174, 774, 882
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	3 cut(s)	528, 636, 848
Sau3AI	GATC	4 cut(s)	442, 595, 904, 937
Sau96I	GGNCC	4 cut(s)	81, 82, 194, 671
SchI	GAGTC	1 cut(s)	652
ScrFI	CCNGG	4 cut(s)	129, 320, 785, 867
SduI	GDGCHC	3 cut(s)	31, 85, 472
SfaNI	GCATC	3 cut(s)	356, 368, 820
SfcI	CTRYAG	2 cut(s)	229, 834
SinI	GGWCC	2 cut(s)	194, 671
SmiMI	CAYNNNNRTG	3 cut(s)	174, 774, 882
Sse9I	AATT	3 cut(s)	353, 422, 437
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	5 cut(s)	63, 72, 102, 153, 201
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	4 cut(s)	127, 318, 783, 865
TaaI	ACNGT	2 cut(s)	713, 745
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	4 cut(s)	217, 445, 568, 828
TasI	AATT	3 cut(s)	353, 422, 437
TatI	WGTACW	2 cut(s)	56, 236
TfiI	GAWTC	1 cut(s)	961
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	3 cut(s)	527, 635, 847
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	4 cut(s)	30, 123, 135, 603
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	718
Van91I	CCANNNNNTGG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	194, 671
XapI	RAATTY	1 cut(s)	353
XbaI	TCTAGA	1 cut(s)	152
XceI	RCATGY	2 cut(s)	119, 402
XspI	CTAG	5 cut(s)	63, 72, 102, 153, 201
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.