Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001562

Physical Location & Seq

Genomic Coordinates Forward (+)

19834323 .. 19836485

Gene Structure 2163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG180700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTTCCTTTTTGTCTGGCGATTCTTCTAACTTTGCTGTGAGTGAAAGTAGTTGCTATAGACAGACTGAGGATAAAGAGGAAGGAGGCTCTTGGTACTTCTCCAGGAAGGAAATTGAAGAAAATTCTCCATCTAAAGTAGATGGCATAGACTTAAAGAAAGAGGCGTATCTACGAAAGTCATACTGTACTTTTCTACAAGATTTGGGGATGAGACTTAAAACCATTGCAACAGTGTGTATGTTTCTCGCCGGTAAGGTTGAAGAAACTCCCCGGCCTCTGAAAGATGTTATCCTTGTCTCCTATGAAATTATTCATAAGAAGGATCCTGCAGCAGCTCAGAGAATCAAGCAAAAGGAGGTATATGAACAGCAGAAGGAATTGATTTTAACTGGCGAGAGGGTTGTTTTAGGAACTCTTGCTTTTGATTTCAATGTACACCATCCGTATAAACCCCTGGTGGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTCGCCCAAGTTGCATGGAATTTTGTTAATGACGGACTTCGGACTTCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCAGCTGGTGCCATTTTTCTTGCCGCCAAGTTCCTCAAAGTAAAGCTTCCATCAGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGATGTCACCCCACGCCAATTGGAGGGTGGGTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

232

Amino Acids

26.26

Weight (kDa)

8.23

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	72 - 144	1.4e-06	Cyclin, N-terminal domain
CycT2-like_C	PF21797	148 - 222	5.6e-07	Cyclin-T2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19600 AT5G45190 AT5G45190 AT5G45190
fragaria_vesca	FvH4_3g15520 FvH4_3g15520 FvH4_3g15520 FvH4_3g15521 FvH4_3g15521
malus_domestica	MD05G1222500.v1.1 MD05G1222600.v1.1 MD10G1204100.v1.1 MD10G1204200.v1.1
prunus_persica	Prupe.4G137700_v2.0.a1 Prupe.4G137800_v2.0.a1
pyrus_communis	pycom05g20520 pycom10g17480 pycom10g17490
rosa_chinensis	RchiOBHm_Chr5g0026141 RchiOBHm_Chr5g0026151
rosa_laevigata	RLG00000032906 RLG00000032907
rosa_multiflora	Rmu_co8230253.1_g000001 Rmu_co8464075.1_g000001 Rmu_sc0002806.1_g000001 Rmu_sc0002909.1_g000016 Rmu_sc0009679.1_g000001 Rmu_sc0009679.1_g000002 Rmu_sc0029141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053050 Rroxscaffold_1G00053160 Rroxscaffold_1G00053170
rosa_rugosa	Rorug05G0091000.1
rosa_samantha	Rh2CG288400 Rh5AG183800 Rh5AG183900 Rh5AG184000 Rh5BG180600 Rh5BG180700 Rh5BG180800 Rh5CG199600 Rh5CG199700 Rh5CG199800 Rh5CG201400 Rh5DG182200 Rh5DG182300 Rh5DG182400
rosa_wichuraiana	Rw5G016640 Rw5G016650 Rw5G016810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	584
AccB7I	CCANNNNNTGG	1 cut(s)	632
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	2 cut(s)	320, 333
AcsI	RAATTY	3 cut(s)	124, 476, 517
AfaI	GTAC	3 cut(s)	98, 190, 438
AfiI	CCNNNNNNNGG	3 cut(s)	463, 632, 682
AgsI	TTSAA	4 cut(s)	119, 263, 433, 481
AjnI	CCWGG	2 cut(s)	104, 456
AluBI	AGCT	4 cut(s)	338, 488, 581, 622
AluI	AGCT	4 cut(s)	338, 488, 581, 622
Alw26I	GTCTC	2 cut(s)	208, 304
AlwI	GGATC	2 cut(s)	320, 333
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	3 cut(s)	332, 335, 578
ApoI	RAATTY	3 cut(s)	124, 476, 517
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	658
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	584
BbvI	GCAGC	3 cut(s)	344, 347, 590
BccI	CCATC	5 cut(s)	137, 139, 450, 626, 634
BciT130I	CCWGG	2 cut(s)	106, 458
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	208, 304
BfmI	CTRYAG	2 cut(s)	58, 330
BisI	GCNGC	4 cut(s)	333, 336, 579, 600
BlsI	GCNGC	4 cut(s)	334, 337, 580, 601
Bme1390I	CCNGG	3 cut(s)	106, 274, 458
BmiI	GGNNCC	2 cut(s)	327, 586
BmrFI	CCNGG	3 cut(s)	106, 274, 458
BpmI	CTGGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	272, 456
BsaXI	ACNNNNNCTCC	1 cut(s)	674
Bsc4I	CCNNNNNNNGG	3 cut(s)	463, 632, 682
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	2 cut(s)	225, 573
BseBI	CCWGG	2 cut(s)	106, 458
BseDI	CCNNGG	2 cut(s)	272, 456
BseGI	GGATG	2 cut(s)	216, 442
BseLI	CCNNNNNNNGG	3 cut(s)	463, 632, 682
BseMI	GCAATG	2 cut(s)	225, 573
BseMII	CTCAG	2 cut(s)	60, 353
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	344, 347, 590
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	584
BsiSI	CCGG	2 cut(s)	252, 274
BslI	CCNNNNNNNGG	3 cut(s)	463, 632, 682
BsmAI	GTCTC	2 cut(s)	208, 304
BsnI	GGCC	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	61, 352
BspLI	GGNNCC	2 cut(s)	327, 586
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	2 cut(s)	320, 333
BspT107I	GGYRCC	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	225, 573
BsrFI	RCCGGY	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	272, 456
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	106, 458
Bst4CI	ACNGT	2 cut(s)	188, 235
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	2 cut(s)	69, 339
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	216, 442
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	2 cut(s)	208, 304
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	4 cut(s)	494, 509, 562, 584
BstNI	CCWGG	2 cut(s)	106, 458
BstSCI	CCNGG	3 cut(s)	104, 272, 456
BstSFI	CTRYAG	2 cut(s)	58, 330
BstV1I	GCAGC	3 cut(s)	344, 347, 590
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	216, 442
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	554
Cfr10I	RCCGGY	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	97, 189, 437
CspCI	CAANNNNNGTGG	2 cut(s)	660, 695
CviAII	CATG	1 cut(s)	513
CviJI	RGCY	8 cut(s)	5, 90, 277, 338, 488, 565, 581, 622
CviKI_1	RGCY	8 cut(s)	5, 90, 277, 338, 488, 565, 581, 622
CviQI	GTAC	3 cut(s)	97, 189, 437
DdeI	CTNAG	2 cut(s)	69, 339
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	104, 456
FaeI	CATG	1 cut(s)	516
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FatI	CATG	1 cut(s)	512
Fnu4HI	GCNGC	4 cut(s)	333, 336, 579, 600
FokI	GGATG	2 cut(s)	223, 429
Fsp4HI	GCNGC	4 cut(s)	333, 336, 579, 600
GluI	GCNGC	4 cut(s)	333, 336, 579, 600
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	2 cut(s)	252, 274
Hin1II	CATG	1 cut(s)	516
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	2 cut(s)	23, 345
HpaII	CCGG	2 cut(s)	252, 274
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	4 cut(s)	282, 342, 540, 631
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	5 cut(s)	77, 103, 316, 370, 634
HpyCH4III	ACNGT	2 cut(s)	188, 235
HpyCH4V	TGCA	5 cut(s)	230, 332, 512, 556, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	494, 509, 562, 584
HpyF3I	CTNAG	2 cut(s)	69, 339
Hsp92II	CATG	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	325
Lsp1109I	GCAGC	3 cut(s)	344, 347, 590
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	3 cut(s)	18, 131, 275
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	8 cut(s)	114, 124, 309, 380, 476, 517, 557, 677
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	5 cut(s)	155, 219, 389, 525, 561
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	2 cut(s)	252, 274
MspR9I	CCNGG	3 cut(s)	106, 274, 458
MunI	CAATTG	1 cut(s)	677
MvaI	CCWGG	2 cut(s)	106, 458
MwoI	GCNNNNNNNGC	4 cut(s)	494, 509, 562, 584
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	516
NlaIV	GGNNCC	2 cut(s)	327, 586
NmuCI	GTSAC	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	23, 345
PflMI	CCANNNNNTGG	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	334, 337, 580, 601
Psp6I	CCWGG	2 cut(s)	104, 456
PspGI	CCWGG	2 cut(s)	104, 456
PspN4I	GGNNCC	2 cut(s)	327, 586
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	3 cut(s)	98, 190, 438
RsaNI	GTAC	3 cut(s)	97, 189, 437
SaqAI	TTAA	5 cut(s)	155, 219, 389, 525, 561
SatI	GCNGC	4 cut(s)	333, 336, 579, 600
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	106, 274, 458
SetI	ASST	7 cut(s)	261, 340, 363, 490, 583, 624, 645
SfcI	CTRYAG	2 cut(s)	58, 330
Sse9I	AATT	8 cut(s)	114, 124, 309, 380, 476, 517, 557, 677
SsiI	CCGC	1 cut(s)	600
StyD4I	CCNGG	3 cut(s)	104, 272, 456
TaaI	ACNGT	2 cut(s)	188, 235
TasI	AATT	8 cut(s)	114, 124, 309, 380, 476, 517, 557, 677
TatI	WGTACW	2 cut(s)	188, 436
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	2 cut(s)	23, 345
Tru1I	TTAA	5 cut(s)	155, 219, 389, 525, 561
Tru9I	TTAA	5 cut(s)	155, 219, 389, 525, 561
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	3 cut(s)	332, 335, 578
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	3 cut(s)	305, 321, 381
TspGWI	ACGGA	2 cut(s)	435, 546
TspRI	CASTG	1 cut(s)	240
Van91I	CCANNNNNTGG	1 cut(s)	632
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	3 cut(s)	124, 476, 517
XcmI	CCANNNNNNNNNTGG	2 cut(s)	578, 683
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.