Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Reverse (-)

11178992 .. 11181049

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCCTTTACCTTGGAAGAAATCTAAATCTAGTCGGATCTCTAGATTCGTATCAGACTTTCAACAATCTCCTAAACATGGTGGATCTCTCGTTGTTGAAACTGGTTTCCCAACTTCTTTAATCGATCTCTTTGTTAAGAATCGCGATCGTCTCAAAAAACAATCTTCAAAACGTAACAACAAGAACAACAAAGCCCAGACTGAAACGCGTGTTTTGTCTCCACCTCCTCCTCATATGTCTTTGCAGCGTCGTATGTCTCTTCCTTCCAAGCTTGATCCAGCTTTGGTTACAGAGGATTCTCCTTTGGTGAGAAAGATCGAGGAAACTTCTGTTCCGGAGATTATCCATGAAGACGACGGTGGTCATCGCGGTGGAGGAGGAGGAGGGTGTGTTTTGATAGTGGTGGTGTTTAAGGTTTTTATGGTGGCTGTGCTTGCCTTGAGCACGAAGAAGCTCGCCGTGGGGATCACGCTCTCTGCTTTTGCCCTTCTCTTCCTCGAGCTTGCGGTGGCGCGTGTCTTCACGTACTTGAATCTCTGTCCCGACGCGCAGATTCGGATAGATTCTTTGATCGATAAGCTCATAGGGAAGCGACATAAAGAGAAGCTAGAAGAAGAAGAAGAATCAACATCGACGCATGACAGAAGAAACAATGTCTACTTTGAAATCATCGAAGAACCTAGAGAGGAGATTAGAGTCACTCCTCAATCGGATTCGTCGTCATTGGAGAAGGCGAAACTTGTGGTGGATGAGAAGAAAGAAATGCAGACGATAAGAGATGTTATGTTTAAGACTGAGAAAAGCAAAAGCGCGAAGCTGAAATCAAAGATTGTGAAGAAGATTGTGCCAAAGAAGCTAAGGAGTTATAAGAAGAAGAAGAAGATGAAGAACAAAGAAAAAGAAGAAGAAGAAGTTGAACTTGAAACTGAAGAAGAAGGGTCTATGACAGAAGTTTCTAGCTTGTATTCAGATGAGAGAATCGGGAGTGAAATCTCTGAGAGGGATGATTTGAGTTCGAATCCGCCATTTTTAGAGAGTTGTACAGAGGTTGAAGAAGAAGAAGAGACTGGACCAAAAGAGGATCTAACGAAAGTGATTGGTTTGATAGTGATTGTTCTTGTTGGATTGCTGTGTGGGAAAGTCTTTGCTATTGGTCTGACACTCTCTTGGTGTCTGATTCTCAGAGTTTTCTGTTGCAAATCTCAAACCAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

45.67

Weight (kDa)

8.48

Isoelectric Point (pI)

64.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	867
AccI	GTMKAC	1 cut(s)	657
AccII	CGCG	6 cut(s)	144, 208, 369, 514, 548, 812
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	3 cut(s)	369, 506, 1022
AclWI	GGATC	5 cut(s)	44, 91, 269, 473, 1089
AcuI	CTGAAG	1 cut(s)	948
AfaI	GTAC	2 cut(s)	527, 1042
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	8 cut(s)	62, 98, 168, 532, 665, 917, 923, 1052
AluBI	AGCT	9 cut(s)	271, 281, 454, 502, 580, 607, 817, 856, 960
AluI	AGCT	9 cut(s)	271, 281, 454, 502, 580, 607, 817, 856, 960
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	4 cut(s)	155, 222, 261, 1058
AlwI	GGATC	5 cut(s)	44, 91, 269, 473, 1089
AlwNI	CAGNNNCTG	1 cut(s)	1215
Ama87I	CYCGRG	1 cut(s)	497
Aor13HI	TCCGGA	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	244
AspLEI	GCGC	3 cut(s)	514, 550, 812
AspS9I	GGNCC	1 cut(s)	1070
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	1016
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	1070
BbsI	GAAGAC	2 cut(s)	357, 511
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	443
BcoDI	GTCTC	4 cut(s)	155, 222, 261, 1058
BfaI	CTAG	5 cut(s)	30, 42, 608, 681, 957
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	1070
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	1070
BoxI	GACNNNNGTC	1 cut(s)	360
BpiI	GAAGAC	2 cut(s)	357, 511
Bpu10I	CCTNAGC	1 cut(s)	857
Bpu14I	TTCGAA	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	460
Bsa29I	ATCGAT	2 cut(s)	123, 573
BsaAI	YACGTR	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	11, 459
BsaWI	WCCGGW	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	106, 1072, 1209
Bse8I	GATNNNNATC	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	334
BseCI	ATCGAT	2 cut(s)	123, 573
BseDI	CCNNGG	2 cut(s)	11, 459
BseGI	GGATG	2 cut(s)	754, 1009
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	786, 987, 1195
BseNI	ACTGG	3 cut(s)	106, 1072, 1209
BseRI	GAGGAG	7 cut(s)	216, 219, 390, 393, 396, 693, 701
BseXI	GCAGC	1 cut(s)	256
Bsh1236I	CGCG	6 cut(s)	144, 208, 369, 514, 548, 812
Bsh1285I	CGRYCG	1 cut(s)	148
BshVI	ATCGAT	2 cut(s)	123, 573
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	4 cut(s)	155, 222, 261, 1058
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	525
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	1016
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	1040
Bsp143I	GATC	9 cut(s)	36, 83, 124, 145, 274, 315, 465, 570, 1081
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	3 cut(s)	369, 506, 1022
BspCNI	CTCAG	3 cut(s)	787, 988, 1194
BspDI	ATCGAT	2 cut(s)	123, 573
BspEI	TCCGGA	1 cut(s)	334
BspFNI	CGCG	6 cut(s)	144, 208, 369, 514, 548, 812
BspPI	GGATC	5 cut(s)	44, 91, 269, 473, 1089
BspT104I	TTCGAA	1 cut(s)	1016
BsrGI	TGTACA	1 cut(s)	1040
BsrI	ACTGG	3 cut(s)	106, 1072, 1209
BssECI	CCNNGG	2 cut(s)	11, 459
BssMI	GATC	9 cut(s)	36, 83, 124, 145, 274, 315, 465, 570, 1081
BssT1I	CCWWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	3 cut(s)	264, 497, 1056
BstAUI	TGTACA	1 cut(s)	1040
BstBAI	YACGTR	1 cut(s)	525
BstBI	TTCGAA	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	435, 456, 504
BstDEI	CTNAG	4 cut(s)	795, 857, 996, 1181
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	754, 1009
BstFNI	CGCG	6 cut(s)	144, 208, 369, 514, 548, 812
BstHHI	GCGC	3 cut(s)	514, 550, 812
BstKTI	GATC	9 cut(s)	39, 86, 127, 148, 277, 318, 468, 573, 1084
BstMAI	GTCTC	4 cut(s)	155, 222, 261, 1058
BstMBI	GATC	9 cut(s)	36, 83, 124, 145, 274, 315, 465, 570, 1081
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 853
BstPAI	GACNNNNGTC	1 cut(s)	360
BstUI	CGCG	6 cut(s)	144, 208, 369, 514, 548, 812
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	2 cut(s)	357, 511
BstX2I	RGATCY	3 cut(s)	36, 83, 1081
BstYI	RGATCY	3 cut(s)	36, 83, 1081
Bsu15I	ATCGAT	2 cut(s)	123, 573
BsuTUI	ATCGAT	2 cut(s)	123, 573
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	754, 1009
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	435, 456, 504
CaiI	CAGNNNCTG	1 cut(s)	1215
CfoI	GCGC	3 cut(s)	514, 550, 812
Cfr13I	GGNCC	1 cut(s)	1070
ClaI	ATCGAT	2 cut(s)	123, 573
CseI	GACGC	3 cut(s)	236, 554, 643
Csp6I	GTAC	2 cut(s)	526, 1041
CviAII	CATG	3 cut(s)	77, 347, 638
CviQI	GTAC	2 cut(s)	526, 1041
DdeI	CTNAG	4 cut(s)	795, 857, 996, 1181
DpnI	GATC	9 cut(s)	38, 85, 126, 147, 276, 317, 467, 572, 1083
DpnII	GATC	9 cut(s)	36, 83, 124, 145, 274, 315, 465, 570, 1081
Eam1104I	CTCTTC	3 cut(s)	264, 497, 1056
EarI	CTCTTC	3 cut(s)	264, 497, 1056
EciI	GGCGGA	1 cut(s)	1011
Eco130I	CCWWGG	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	1070
Eco57I	CTGAAG	1 cut(s)	948
Eco88I	CYCGRG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	3 cut(s)	80, 350, 641
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	3 cut(s)	76, 346, 637
FauNDI	CATATG	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	2 cut(s)	761, 1016
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	5 cut(s)	30, 42, 608, 681, 957
GlaI	GCGC	3 cut(s)	513, 549, 811
GluI	GCNGC	1 cut(s)	245
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	3 cut(s)	236, 554, 643
HhaI	GCGC	3 cut(s)	514, 550, 812
Hin1II	CATG	3 cut(s)	80, 350, 641
Hin6I	GCGC	3 cut(s)	512, 548, 810
HinP1I	GCGC	3 cut(s)	512, 548, 810
HindIII	AAGCTT	1 cut(s)	269
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188III	TCNNGA	5 cut(s)	42, 143, 335, 542, 982
Hpy8I	GTNNAC	1 cut(s)	658
Hpy99I	CGWCG	5 cut(s)	252, 359, 548, 637, 721
HpyAV	CCTTC	4 cut(s)	273, 497, 724, 929
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	2 cut(s)	172, 524
HpyCH4V	TGCA	3 cut(s)	244, 766, 1197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 853
HpyF3I	CTNAG	4 cut(s)	795, 857, 996, 1181
HpySE526I	ACGT	2 cut(s)	172, 524
Hsp92II	CATG	3 cut(s)	80, 350, 641
HspAI	GCGC	3 cut(s)	512, 548, 810
Kpn2I	TCCGGA	1 cut(s)	334
Kzo9I	GATC	9 cut(s)	36, 83, 124, 145, 274, 315, 465, 570, 1081
LpnPI	CCDG	5 cut(s)	87, 209, 291, 348, 1053
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	5 cut(s)	30, 42, 608, 681, 957
MaeII	ACGT	2 cut(s)	172, 524
MaeIII	GTNAC	3 cut(s)	173, 286, 697
MalI	GATC	9 cut(s)	38, 85, 126, 147, 276, 317, 467, 572, 1083
MboI	GATC	9 cut(s)	36, 83, 124, 145, 274, 315, 465, 570, 1081
MflI	RGATCY	3 cut(s)	36, 83, 1081
MhlI	GDGCHC	1 cut(s)	446
MluI	ACGCGT	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	705
MmeI	TCCRAC	2 cut(s)	14, 1102
MroI	TCCGGA	1 cut(s)	334
MseI	TTAA	4 cut(s)	119, 135, 411, 789
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	1 cut(s)	335
MvnI	CGCG	6 cut(s)	144, 208, 369, 514, 548, 812
MwoI	GCNNNNNNNGC	2 cut(s)	434, 853
NdeI	CATATG	1 cut(s)	234
NdeII	GATC	9 cut(s)	36, 83, 124, 145, 274, 315, 465, 570, 1081
NlaIII	CATG	3 cut(s)	80, 350, 641
NmuCI	GTSAC	1 cut(s)	697
NruI	TCGCGA	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	1016
PaeR7I	CTCGAG	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	716
PkrI	GCNGC	1 cut(s)	246
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
Ppu21I	YACGTR	1 cut(s)	525
PshAI	GACNNNNGTC	1 cut(s)	360
PsiI	TTATAA	1 cut(s)	867
PspPI	GGNCC	1 cut(s)	1070
PspXI	VCTCGAGB	1 cut(s)	497
PstNI	CAGNNNCTG	1 cut(s)	1215
PsuI	RGATCY	3 cut(s)	36, 83, 1081
PvuI	CGATCG	1 cut(s)	148
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	2 cut(s)	527, 1042
RsaNI	GTAC	2 cut(s)	526, 1041
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	4 cut(s)	119, 135, 411, 789
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	9 cut(s)	36, 83, 124, 145, 274, 315, 465, 570, 1081
Sau96I	GGNCC	1 cut(s)	1070
SchI	GAGTC	1 cut(s)	705
SduI	GDGCHC	1 cut(s)	446
Sfr274I	CTCGAG	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	1016
SinI	GGWCC	1 cut(s)	1070
SlaI	CTCGAG	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	439, 497
SmoI	CTYRAG	2 cut(s)	439, 497
SsiI	CCGC	3 cut(s)	369, 506, 1022
SspMI	CTAG	5 cut(s)	30, 42, 608, 681, 957
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	2 cut(s)	175, 527
TaqI	TCGA	7 cut(s)	123, 318, 498, 573, 632, 672, 1016
TatI	WGTACW	1 cut(s)	1040
Tru1I	TTAA	4 cut(s)	119, 135, 411, 789
Tru9I	TTAA	4 cut(s)	119, 135, 411, 789
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	2 cut(s)	363, 899
VpaK11BI	GGWCC	1 cut(s)	1070
XbaI	TCTAGA	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	5 cut(s)	30, 42, 608, 681, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.