Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

63630266 .. 63631208

Gene Structure 943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCGGCGAAGATGATCATGGTGTTTCGGAAAACACTGATTCTCGGATTTCGGATGCGGAAAGTTCTGTTGAGGAATCGGCCCGTGGCAGGTGTAGATATTTGACTTCGGTTATTGTGGCGGTGGCGAAGGTGTTTGCAGTGGTGGTTTTGGCTATGTGCACCACCAAGCTCGCCGTTGGGATCACATTGTCAGCTTTTCTGCTTCTGCTTTTGTTTATGGAAGGTAAGCACTTTTCTTGTTTAATGAAAACTTGCTCGAATGCGAAATCGGCCTTGCAATATATGGCCAAAAGGATCGGCTTTGCAATATTGGTTTTGAGGAGTGATGTGATTGTGAAAGAAAAGAGTGATGGTGTTGTGTTTGAATTGGCTGAACCTAGGGTTGAATCAGACGTTGAATCAGACTCTTCAATTGAAGAGATTGAGGTTGTGGAGGTTAAGAGTAGTGGTAGTGTGTGTATTGATGAAGGTAATAGTCATATGAGCTTGATTGAGTATTTGGTTGTCGATGATGAGAAGTGGAAGAAGATTGAGGCGGGTGATCATACTGATGACTTGTCGGTTTCGCTTGGTAAGAAGAGTAAGGGTAGAAAGAAGTCTGTGCCTGAGATGGGAGCAAAGTTTATCAAAAAGTTTGTGCCTAAGAAATTGCGTAAGAAGAGTAAGAAGCATCAGTACGGGACGGAGCGGGAGCCGGAGCCGGAGCCGGAGCCAAAGCCAAGTACTGTAGTGAAGTTTGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.45

Weight (kDa)

6.55

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	691
AciI	CCGC	4 cut(s)	59, 122, 539, 691
AclWI	GGATC	2 cut(s)	191, 305
AcoI	YGGCCR	2 cut(s)	3, 288
AfaI	GTAC	2 cut(s)	680, 727
AfiI	CCNNNNNNNGG	2 cut(s)	90, 614
AgsI	TTSAA	5 cut(s)	368, 389, 401, 414, 419
AluBI	AGCT	3 cut(s)	172, 197, 489
AluI	AGCT	3 cut(s)	172, 197, 489
Alw21I	GWGCWC	1 cut(s)	164
Alw44I	GTGCAC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	191, 305
AoxI	GGCC	4 cut(s)	3, 81, 273, 288
ApaLI	GTGCAC	1 cut(s)	160
AspA2I	CCTAGG	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	554
AvrII	CCTAGG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	290
BarI	GAAGNNNNNNTAC	2 cut(s)	662, 694
Bbv12I	GWGCWC	1 cut(s)	164
BccI	CCATC	2 cut(s)	347, 607
BceAI	ACGGC	1 cut(s)	161
BclI	TGATCA	2 cut(s)	16, 544
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	729
BfuAI	ACCTGC	1 cut(s)	81
BlnI	CCTAGG	1 cut(s)	380
BmcAI	AGTACT	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	4 cut(s)	696, 702, 708, 714
BmsI	GCATC	2 cut(s)	46, 682
BsaJI	CCNNGG	2 cut(s)	85, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 614
Bse118I	RCCGGY	1 cut(s)	5
BseDI	CCNNGG	2 cut(s)	85, 380
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	90, 614
BseMII	CTCAG	1 cut(s)	600
BseRI	GAGGAG	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	164
BshFI	GGCC	4 cut(s)	5, 83, 275, 290
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	4 cut(s)	6, 698, 704, 710
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	2 cut(s)	90, 614
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	5, 83, 275, 290
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	16, 183, 297, 544
BspACI	CCGC	4 cut(s)	59, 122, 539, 691
BspANI	GGCC	4 cut(s)	5, 83, 275, 290
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	4 cut(s)	696, 702, 708, 714
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	191, 305
BsrBI	CCGCTC	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	85, 380
BssMI	GATC	4 cut(s)	16, 183, 297, 544
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	4 cut(s)	414, 415, 575, 656
BstC8I	GCNNGC	2 cut(s)	7, 174
BstDEI	CTNAG	2 cut(s)	609, 645
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	4 cut(s)	19, 186, 300, 547
BstMBI	GATC	4 cut(s)	16, 183, 297, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	1 cut(s)	164
BsuRI	GGCC	4 cut(s)	5, 83, 275, 290
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	36, 147
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	7, 174
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	679, 726
CviAII	CATG	1 cut(s)	20
CviQI	GTAC	2 cut(s)	679, 726
DdeI	CTNAG	2 cut(s)	609, 645
DpnI	GATC	4 cut(s)	18, 185, 299, 546
DpnII	GATC	4 cut(s)	16, 183, 297, 544
EaeI	YGGCCR	2 cut(s)	3, 288
Eam1104I	CTCTTC	4 cut(s)	414, 415, 575, 656
EarI	CTCTTC	4 cut(s)	414, 415, 575, 656
Eco130I	CCWWGG	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	23
FaiI	YATR	8 cut(s)	21, 158, 221, 285, 287, 483, 485, 549
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	1 cut(s)	19
FauI	CCCGC	2 cut(s)	532, 684
FauNDI	CATATG	1 cut(s)	483
FbaI	TGATCA	2 cut(s)	16, 544
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	5, 83, 275, 290
HapII	CCGG	4 cut(s)	6, 698, 704, 710
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	5 cut(s)	41, 77, 389, 401, 407
HpaII	CCGG	4 cut(s)	6, 698, 704, 710
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	5 cut(s)	31, 48, 55, 394, 406
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	124, 218, 464
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	140, 162, 280, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	609, 645
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	2 cut(s)	16, 544
Kzo9I	GATC	4 cut(s)	16, 183, 297, 544
LmnI	GCTCC	6 cut(s)	617, 688, 694, 700, 706, 712
LpnPI	CCDG	6 cut(s)	19, 76, 621, 711, 717, 723
LweI	GCATC	2 cut(s)	46, 682
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	396
MalI	GATC	4 cut(s)	18, 185, 299, 546
MbiI	CCGCTC	1 cut(s)	691
MboI	GATC	4 cut(s)	16, 183, 297, 544
MboII	GAAGA	7 cut(s)	23, 402, 431, 538, 541, 592, 673
MfeI	CAATTG	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	4 cut(s)	368, 414, 650, 745
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	5 cut(s)	67, 315, 421, 430, 529
Mox20I	TGGCCA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	2 cut(s)	245, 441
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	4 cut(s)	6, 698, 704, 710
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	272
NaeI	GCCGGC	1 cut(s)	7
NdeI	CATATG	1 cut(s)	483
NdeII	GATC	4 cut(s)	16, 183, 297, 544
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	4 cut(s)	696, 702, 708, 714
PaqCI	CACCTGC	1 cut(s)	81
PctI	GAATGC	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	4 cut(s)	41, 77, 389, 401
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PspN4I	GGNNCC	4 cut(s)	696, 702, 708, 714
PspPI	GGNCC	1 cut(s)	82
RsaI	GTAC	2 cut(s)	680, 727
RsaNI	GTAC	2 cut(s)	679, 726
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	245, 441
Sau3AI	GATC	4 cut(s)	16, 183, 297, 544
Sau96I	GGNCC	1 cut(s)	82
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	164
SfaNI	GCATC	2 cut(s)	46, 682
SfcI	CTRYAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	552
Sse9I	AATT	4 cut(s)	368, 414, 650, 745
SsiI	CCGC	4 cut(s)	59, 122, 539, 691
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	730
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	260, 510
TasI	AATT	4 cut(s)	368, 414, 650, 745
TatI	WGTACW	1 cut(s)	725
TfiI	GAWTC	4 cut(s)	41, 77, 389, 401
Tru1I	TTAA	2 cut(s)	245, 441
Tru9I	TTAA	2 cut(s)	245, 441
TscAI	CASTG	2 cut(s)	43, 147
TspDTI	ATGAA	2 cut(s)	263, 483
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	43, 147
VneI	GTGCAC	1 cut(s)	160
XmaJI	CCTAGG	1 cut(s)	380
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.