Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001173.1

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

56676 .. 57489

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001173.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggtggccgagctaagcccgaaagcttcacccgtttccagcgatgttttccaattccagccaaatcgtggcagctcaccggtgccagaggcttcctctcgtcctcgccaacctatcctcggtgttggagagatcgagaatttcatcactggaaaatatgatcatggtgtttcagaagacactgattctcatatttcgagtgaaacggatgcaggaagttctgaaactgttgttgaggaatcggactgtggcagtagtggagatttgaattcagtttttgtggcggtgccaaaggtgtttgcggtggtggttttggctctgtgcaccaccaagatcggctatgcaatattggttttgaggagtgacgtgattgtgaaagaaaagagtgatggtgttgtgtttgaattggttgaacctggggttgaatcagactcttcaattgaagagattgaggttgtaagaagagtaagagagaacatgtttgcaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.38

Weight (kDa)

4.41

Isoelectric Point (pI)

72.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	476
AccB1I	GGYRCC	2 cut(s)	82, 286
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	2 cut(s)	284, 302
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	139, 268
AfiI	CCNNNNNNNGG	2 cut(s)	68, 119
AflIII	ACRYGT	1 cut(s)	477
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	6 cut(s)	268, 404, 413, 425, 438, 443
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	3 cut(s)	13, 26, 75
AluI	AGCT	3 cut(s)	13, 26, 75
Alw21I	GWGCWC	1 cut(s)	326
Alw44I	GTGCAC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	6
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	2 cut(s)	139, 268
AsiGI	ACCGGT	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	21, 69
BaeGI	GKGCMC	1 cut(s)	326
BanI	GGYRCC	2 cut(s)	82, 286
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	417
BclI	TGATCA	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	476
BisI	GCNGC	1 cut(s)	73
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	417
BmgBI	CACGTC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	84, 288
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu1102I	GCTNAGC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	118, 416
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 119
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	118, 416
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	68, 119
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	2 cut(s)	82, 286
BshTI	ACCGGT	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	68, 119
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	132, 160, 333
Bsp1720I	GCTNAGC	1 cut(s)	14
BspACI	CCGC	2 cut(s)	284, 302
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	84, 288
BspMI	ACCTGC	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	82, 286
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	2 cut(s)	118, 416
BssMI	GATC	3 cut(s)	132, 160, 333
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	229, 248
Bst6I	CTCTTC	3 cut(s)	438, 439, 457
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	135, 163, 336
BstMBI	GATC	3 cut(s)	132, 160, 333
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	147, 180
BveI	ACCTGC	1 cut(s)	476
Cfr10I	RCCGGY	1 cut(s)	79
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	2 cut(s)	164, 478
CviJI	RGCY	9 cut(s)	8, 13, 18, 26, 61, 75, 92, 317, 339
CviKI_1	RGCY	9 cut(s)	8, 13, 18, 26, 61, 75, 92, 317, 339
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	3 cut(s)	134, 162, 335
DpnII	GATC	3 cut(s)	132, 160, 333
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	438, 439, 457
EarI	CTCTTC	3 cut(s)	438, 439, 457
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	167, 481
FaiI	YATR	5 cut(s)	159, 165, 192, 342, 479
FatI	CATG	2 cut(s)	163, 477
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	2 cut(s)	167, 481
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	4 cut(s)	185, 239, 425, 431
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	21, 69
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	4 cut(s)	175, 223, 244, 430
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	324
HpyCH4III	ACNGT	2 cut(s)	229, 248
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	4 cut(s)	212, 324, 344, 485
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	167, 481
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	132, 160, 333
LpnPI	CCDG	9 cut(s)	52, 71, 93, 99, 135, 198, 402, 429, 471
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	3 cut(s)	134, 162, 335
MboI	GATC	3 cut(s)	132, 160, 333
MboII	GAAGA	4 cut(s)	188, 426, 455, 474
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	5 cut(s)	53, 139, 268, 404, 438
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	7 cut(s)	82, 106, 114, 128, 229, 351, 445
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	417
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	132, 160, 333
NlaIII	CATG	2 cut(s)	167, 481
NlaIV	GGNNCC	2 cut(s)	84, 288
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	481
PciI	ACATGT	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	185, 239, 425
PflMI	CCANNNNNTGG	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PscI	ACATGT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	84, 288
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	3 cut(s)	132, 160, 333
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	9 cut(s)	15, 28, 77, 115, 297, 369, 418, 456, 490
SfaNI	GCATC	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	79
Sse9I	AATT	5 cut(s)	53, 139, 268, 404, 438
SsiI	CCGC	2 cut(s)	284, 302
SspI	AATATT	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	229, 248
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	135, 197
TasI	AATT	5 cut(s)	53, 139, 268, 404, 438
TfiI	GAWTC	3 cut(s)	185, 239, 425
TscAI	CASTG	2 cut(s)	154, 187
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	133
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	154, 187
Van91I	CCANNNNNTGG	1 cut(s)	68
VneI	GTGCAC	1 cut(s)	322
XapI	RAATTY	2 cut(s)	139, 268
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.