Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

78111045 .. 78114987

Gene Structure 3943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCATGTTAACATCACTAATGATCTATCTGGTGGAGCTGGAGCTCCCACCAATCTCAACATTAATTGTAAAACACAGAAGCGCGATTTTGGTAGTCTGGTGGTATCCAGTTTGGGAGAGATCGAGAATTTCATTGCCGGAAAAGATGATCATGATGTTTCGGAAGACATTGATTCTTGGATTTCTGGTGAAACCGATGCTGGAAGTTCTGAAACTGTTGTTGAGGAATTGGGTCGTGGCAGCTGTAGAGATTTGAATTCGGTTTTTGTGGCGGTGCCGAAGGTGTTTGCGGTGGTGGTTTTAGCTCTGTGCACCACCAAGATCGTCGTTGGGATCACACTATCTGCTTTTCTGCTTTTGTTTCTGGAATGTGTGGGTAAGCACTTTTCTTATTTAGCGAAAACTTGCTCGAATGCGAAATCAGCTTTGCAATATATGGCTAAAAGGATAGGCTATGCAATATTGGTTTTGAGGAGTAATGTGATTGTGAAAGAAAAGAATGATGGTGCTGTGTTTGAATTGGTTGAACCTGGGGTTGAATCAGACTCTTTAGTTGAAGAGATTGAGGTTGTGGAGCTTAAGAGTAGTGTTAGTGTGCGTATTGATGAAGGTATTAGTCAGAAGAGTTTGATTGAGTATTTGATTATGGATGATGAGAAATGGGAGAAGATTGAAACGGGTGATAATACAGATGACTTATCGATTTCAGTTTGTAAGAAGAGTAAGAGAGAACATGTTTGCAGATTGATGCACGTCCATGAACTTGGTCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.23

Weight (kDa)

4.95

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccII	CGCG	1 cut(s)	84
AciI	CCGC	2 cut(s)	272, 290
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	127, 256
AflII	CTTAAG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	6 cut(s)	256, 518, 527, 539, 557, 674
AjiI	CACGTC	1 cut(s)	754
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	6 cut(s)	38, 44, 243, 305, 425, 577
AluI	AGCT	6 cut(s)	38, 44, 243, 305, 425, 577
Alw21I	GWGCWC	2 cut(s)	46, 314
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	341
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	2 cut(s)	127, 256
AseI	ATTAAT	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	200, 692
BaeGI	GKGCMC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	46, 314
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	244
BfrI	CTTAAG	1 cut(s)	578
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	531
BmgBI	CACGTC	1 cut(s)	754
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	2 cut(s)	187, 738
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	701
BsaJI	CCNNGG	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	701
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	701
BsiHKAI	GWGCWC	2 cut(s)	46, 314
BsiSI	CCGG	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	46, 314
Bsp143I	GATC	5 cut(s)	22, 120, 148, 321, 333
BspACI	CCGC	2 cut(s)	272, 290
BspDI	ATCGAT	1 cut(s)	701
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	274
BspTI	CTTAAG	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	5 cut(s)	22, 120, 148, 321, 333
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	3 cut(s)	552, 617, 713
BstAFI	CTTAAG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	655
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	5 cut(s)	25, 123, 151, 324, 336
BstMBI	GATC	5 cut(s)	22, 120, 148, 321, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	2 cut(s)	8, 737
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	314
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	764
Bsu15I	ATCGAT	1 cut(s)	701
BsuI	GTATCC	1 cut(s)	115
BsuTUI	ATCGAT	1 cut(s)	701
BtrI	CACGTC	1 cut(s)	754
BtsCI	GGATG	1 cut(s)	655
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	84
ClaI	ATCGAT	1 cut(s)	701
CviAII	CATG	4 cut(s)	5, 152, 734, 758
CviJI	RGCY	8 cut(s)	38, 44, 243, 305, 425, 440, 453, 577
CviKI_1	RGCY	8 cut(s)	38, 44, 243, 305, 425, 440, 453, 577
DpnI	GATC	5 cut(s)	24, 122, 150, 323, 335
DpnII	GATC	5 cut(s)	22, 120, 148, 321, 333
Eam1104I	CTCTTC	3 cut(s)	552, 617, 713
EarI	CTCTTC	3 cut(s)	552, 617, 713
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	4 cut(s)	8, 155, 737, 761
FaiI	YATR	8 cut(s)	6, 153, 435, 437, 456, 647, 735, 759
FatI	CATG	4 cut(s)	4, 151, 733, 757
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	241
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	241
GsuI	CTGGAG	1 cut(s)	60
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	8, 155, 737, 761
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	173, 539, 545
HpaI	GTTAAC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	200, 692
Hpy166II	GTNNAC	2 cut(s)	10, 312
Hpy188I	TCNGA	4 cut(s)	163, 211, 544, 621
Hpy188III	TCNNGA	3 cut(s)	124, 152, 365
Hpy8I	GTNNAC	2 cut(s)	10, 312
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	274, 602
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	6 cut(s)	4, 312, 430, 458, 741, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	4 cut(s)	8, 155, 737, 761
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	5 cut(s)	22, 120, 148, 321, 333
LmnI	GCTCC	4 cut(s)	35, 41, 49, 574
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	2 cut(s)	187, 738
MaeII	ACGT	1 cut(s)	753
MalI	GATC	5 cut(s)	24, 122, 150, 323, 335
MboI	GATC	5 cut(s)	22, 120, 148, 321, 333
MboII	GAAGA	5 cut(s)	176, 569, 634, 679, 730
MhlI	GDGCHC	2 cut(s)	46, 314
MluCI	AATT	5 cut(s)	64, 127, 227, 256, 518
MlyI	GAGTC	1 cut(s)	539
MnlI	CCTC	3 cut(s)	217, 465, 559
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	9, 63, 579
MslI	CAYNNNNRTG	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	422
NdeII	GATC	5 cut(s)	22, 120, 148, 321, 333
NlaIII	CATG	4 cut(s)	8, 155, 737, 761
NlaIV	GGNNCC	1 cut(s)	276
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 737
PagI	TCATGA	1 cut(s)	151
PciI	ACATGT	1 cut(s)	733
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	173, 539
PkrI	GCNGC	1 cut(s)	242
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PscI	ACATGT	1 cut(s)	733
PshBI	ATTAAT	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	756
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	9, 63, 579
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	5 cut(s)	22, 120, 148, 321, 333
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	46, 314
SfaNI	GCATC	2 cut(s)	187, 738
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	5 cut(s)	64, 127, 227, 256, 518
SsiI	CCGC	2 cut(s)	272, 290
SspI	AATATT	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	3 cut(s)	123, 410, 701
TasI	AATT	5 cut(s)	64, 127, 227, 256, 518
TfiI	GAWTC	2 cut(s)	173, 539
Tru1I	TTAA	3 cut(s)	9, 63, 579
Tru9I	TTAA	3 cut(s)	9, 63, 579
TseI	GCWGC	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	121, 621, 774
Vha464I	CTTAAG	1 cut(s)	578
VneI	GTGCAC	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	2 cut(s)	127, 256
XceI	RCATGY	2 cut(s)	8, 737
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.