Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Reverse (-)

40450355 .. 40451833

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1269300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGCCGCTTCCGTGGAAGAAGATGAGGGCGAATCGGATTTCCCAATTCGTCGCCGATCTCCAGTCGCCGAAGCGCGGCGGTTCGCTCGTCGTGCAGACCGGGTTTCCCACCTCTCTCATTGACCTCTTCGTCAAGAACCGCGATCACTTAAAGAAACCGTCGAAAAAGAATAAGAACAAGAGCAAGAAGAGAGAGAGTCGGGTCGAGGACCGGGTCGAGGACCGGGTCGACGATCGGATCACTCTGAATTGTGAACTGGGTTCGGGCGATTTGCCGATTTTGGTGAAACCCAGTTCGCCAAAGGTCGAGAATTTGAAGCCCAGAGAAGCCGATCACGGCGTTGAAGCTACTGGGATTGAAAATCGTAAGAAGAATTTTGTTGTTGGCGGTGAGGATTGCATCGGTGGCAATTGGGGGCCGGTTCTGACGGCGGTGATGAAGATGTTTGTGGTGGTGGTTTTGGCTCTGAGCACCAAGAAGCTCGTCGTTGGGGTCACATTGTCTGCTTTTCTGCTTCTGCTTCTCGAATACGCCGGTAAGCACTTGGCTTTGTTCTTGAAACCATGTTCGAATGCGAAATCTGTGATGGGTCAGAGATTGTCTGCGTTTTTATTGTTTTTGAATGGTTTCGAGAGTGATGATTTGAAGGGAGTGATTGCAAGAGAAAGGACTGTGTTTTTAGATTCTGCCATTGAAGAGATTGAGATTGTTGATGCTAACAAGAAGGGAAGATTGATTGAGTTGCTCCGTATAGATTGTGAGAAGGAAAAGGCGGCAGAGAAGGGAAGTGTTTGCGTTGATAAAACTTCCGGCGAAAAAAGTATGGTTGACTTGCTTGGGATGGAATGTAAGAAGAAGAAGCTGGTGGATAAGAGAAGGGTTTGTGCTGATAAGACTGTCGAGGATATGTCATTGGTTAAGTTATTGGGGAAGGATTATAAGAAGATAAAGCTCGTGGAGGGTGGCGAAGATGGAGGTGAATTTGTTGGGGATAAGAAGAGTAAGGGTAGCAAGAATGCTAAGATTAAAGCTAAACTTATCAAGAAATTTGTGCCTAAGAAGTTGCGTCGAAAGGGTAAGCCAAACGAGCAGGAGCTGGAGCCTGTGCTGTACGGTGGAGATTCTAGTTTCCTTGGAGTTGATAAGGTAGAGGGATGTGAAGCACAAGAAGACCATGAAGATGTGAATGAGGATGAACAAGAAAGCGAAAACATATCAGTGTTTTCACTAGATGCAGAAGAGAAGTCTGAAATCCAAGGATTGGATAGAGTTTCATTGGCTGGCGAAGAAACACCGTTGGTTGTTAAAAAGAAGGGAAGAGAAGGAAAAGAAGGGAATTTCGGGTATCTGTTTCTCTTCCTAATTGTTCTTGCCGGACTTTTTGGAGGTCGGCTTGTAGCCCTTTTGCTTACAGTCACTTTCTGTTTTTTGTCGAAATTGATTGGAACTCTGAGGAGACTGGTAAAATTATGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

493

Amino Acids

54.48

Weight (kDa)

9.14

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	939
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	1261
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	2 cut(s)	75, 141
AciI	CCGC	7 cut(s)	5, 75, 78, 139, 387, 431, 773
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	5 cut(s)	310, 373, 980, 1046, 1336
AfaI	GTAC	1 cut(s)	1112
AfiI	CCNNNNNNNGG	3 cut(s)	74, 217, 1261
AgsI	TTSAA	7 cut(s)	316, 344, 359, 559, 622, 646, 695
AluBI	AGCT	6 cut(s)	347, 481, 862, 952, 1031, 1096
AluI	AGCT	6 cut(s)	347, 481, 862, 952, 1031, 1096
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	1450
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	1096
AoxI	GGCC	1 cut(s)	416
ApoI	RAATTY	5 cut(s)	310, 373, 980, 1046, 1336
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	208, 220, 416
AsuC2I	CCSGG	3 cut(s)	100, 212, 224
AsuHPI	GGTGA	4 cut(s)	295, 401, 445, 989
AsuII	TTCGAA	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	208, 220
BauI	CACGAG	1 cut(s)	953
BbsI	GAAGAC	1 cut(s)	1176
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	3 cut(s)	580, 835, 965
BceAI	ACGGC	2 cut(s)	352, 444
BcnI	CCSGG	3 cut(s)	100, 212, 224
BcoDI	GTCTC	1 cut(s)	1450
BfaI	CTAG	2 cut(s)	1125, 1229
BisI	GCNGC	3 cut(s)	5, 76, 774
BlsI	GCNGC	3 cut(s)	6, 77, 775
Bme1390I	CCNGG	3 cut(s)	100, 212, 224
Bme18I	GGWCC	2 cut(s)	208, 220
BmgT120I	GGNCC	3 cut(s)	208, 220, 416
BmiI	GGNNCC	2 cut(s)	417, 1101
BmrFI	CCNGG	3 cut(s)	100, 212, 224
BmrI	ACTGGG	3 cut(s)	266, 285, 360
BmsI	GCATC	3 cut(s)	408, 703, 1222
BmuI	ACTGGG	3 cut(s)	266, 285, 360
BpiI	GAAGAC	1 cut(s)	1176
BpmI	CTGGAG	2 cut(s)	44, 1118
Bpu14I	TTCGAA	1 cut(s)	569
BpuMI	CCSGG	3 cut(s)	100, 212, 224
BsaJI	CCNNGG	3 cut(s)	11, 1132, 1255
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 217, 1261
Bse118I	RCCGGY	2 cut(s)	418, 533
Bse1I	ACTGG	5 cut(s)	61, 261, 291, 355, 1464
BseDI	CCNNGG	3 cut(s)	11, 1132, 1255
BseGI	GGATG	3 cut(s)	846, 1160, 1198
BseLI	CCNNNNNNNGG	3 cut(s)	74, 217, 1261
BseMII	CTCAG	2 cut(s)	458, 1442
BseNI	ACTGG	5 cut(s)	61, 261, 291, 355, 1464
BseRI	GAGGAG	1 cut(s)	1468
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	75, 141
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	7 cut(s)	99, 211, 223, 419, 534, 810, 1374
BslI	CCNNNNNNNGG	3 cut(s)	74, 217, 1261
BsmAI	GTCTC	1 cut(s)	1450
BsmI	GAATGC	2 cut(s)	577, 1021
BsnI	GGCC	1 cut(s)	418
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	5 cut(s)	55, 142, 232, 237, 331
BspACI	CCGC	7 cut(s)	5, 75, 78, 139, 387, 431, 773
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	2 cut(s)	459, 1443
BspFNI	CGCG	2 cut(s)	75, 141
BspLI	GGNNCC	2 cut(s)	417, 1101
BspPI	GGATC	1 cut(s)	245
BspT104I	TTCGAA	1 cut(s)	569
BsrFI	RCCGGY	2 cut(s)	418, 533
BsrI	ACTGG	5 cut(s)	61, 261, 291, 355, 1464
BssAI	RCCGGY	2 cut(s)	418, 533
BssECI	CCNNGG	3 cut(s)	11, 1132, 1255
BssMI	GATC	5 cut(s)	55, 142, 232, 237, 331
BssSI	CACGAG	1 cut(s)	953
BssT1I	CCWWGG	2 cut(s)	1132, 1255
Bst2BI	CACGAG	1 cut(s)	953
Bst4CI	ACNGT	6 cut(s)	159, 673, 898, 1115, 1296, 1414
Bst6I	CTCTTC	7 cut(s)	131, 182, 690, 992, 1233, 1312, 1361
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	1282
BstDEI	CTNAG	4 cut(s)	467, 1020, 1056, 1451
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	3 cut(s)	846, 1160, 1198
BstFNI	CGCG	2 cut(s)	75, 141
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	5 cut(s)	58, 145, 235, 240, 334
BstMAI	GTCTC	1 cut(s)	1450
BstMBI	GATC	5 cut(s)	55, 142, 232, 237, 331
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 405, 1087
BstSCI	CCNGG	3 cut(s)	98, 210, 222
BstUI	CGCG	2 cut(s)	75, 141
BstV2I	GAAGAC	1 cut(s)	1176
BsuRI	GGCC	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	846, 1160, 1198
BtsIMutI	CAGTG	1 cut(s)	1224
Cac8I	GCNNGC	1 cut(s)	1282
CaiI	CAGNNNCTG	1 cut(s)	1096
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	2 cut(s)	418, 533
Cfr13I	GGNCC	3 cut(s)	208, 220, 416
CseI	GACGC	1 cut(s)	1055
Csp6I	GTAC	1 cut(s)	1111
CviAII	CATG	3 cut(s)	564, 1175, 1476
CviQI	GTAC	1 cut(s)	1111
DdeI	CTNAG	4 cut(s)	467, 1020, 1056, 1451
DpnI	GATC	5 cut(s)	57, 144, 234, 239, 333
DpnII	GATC	5 cut(s)	55, 142, 232, 237, 331
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	7 cut(s)	131, 182, 690, 992, 1233, 1312, 1361
EarI	CTCTTC	7 cut(s)	131, 182, 690, 992, 1233, 1312, 1361
Eco130I	CCWWGG	2 cut(s)	1132, 1255
Eco47I	GGWCC	2 cut(s)	208, 220
EcoT14I	CCWWGG	2 cut(s)	1132, 1255
ErhI	CCWWGG	2 cut(s)	1132, 1255
FaeI	CATG	3 cut(s)	567, 1178, 1479
FaiI	YATR	9 cut(s)	565, 752, 824, 908, 939, 1176, 1214, 1471, 1477
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FatI	CATG	3 cut(s)	563, 1174, 1475
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	5, 76, 774
FokI	GGATG	3 cut(s)	853, 1167, 1205
Fsp4HI	GCNGC	3 cut(s)	5, 76, 774
FspBI	CTAG	2 cut(s)	1125, 1229
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	5, 76, 774
GsuI	CTGGAG	2 cut(s)	44, 1118
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	7 cut(s)	99, 211, 223, 419, 534, 810, 1374
HgaI	GACGC	1 cut(s)	1055
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	567, 1178, 1479
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	2 cut(s)	229, 829
HindII	GTYRAC	2 cut(s)	229, 829
HinfI	GANTC	4 cut(s)	31, 196, 683, 1121
HpaII	CCGG	7 cut(s)	99, 211, 223, 419, 534, 810, 1374
HphI	GGTGA	4 cut(s)	295, 401, 445, 989
Hpy166II	GTNNAC	3 cut(s)	229, 254, 829
Hpy188I	TCNGA	8 cut(s)	36, 237, 246, 426, 468, 594, 1249, 1452
Hpy188III	TCNNGA	6 cut(s)	133, 307, 524, 556, 631, 1042
Hpy8I	GTNNAC	3 cut(s)	229, 254, 829
Hpy99I	CGWCG	6 cut(s)	53, 92, 163, 233, 488, 1071
HpyAV	CCTTC	9 cut(s)	640, 718, 757, 775, 870, 925, 1306, 1316, 1325
HpyCH4III	ACNGT	6 cut(s)	159, 673, 898, 1115, 1296, 1414
HpyCH4V	TGCA	4 cut(s)	94, 399, 659, 1235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 405, 1087
HpyF3I	CTNAG	4 cut(s)	467, 1020, 1056, 1451
Hsp92II	CATG	3 cut(s)	567, 1178, 1479
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	55, 142, 232, 237, 331
LmnI	GCTCC	3 cut(s)	750, 1093, 1099
LweI	GCATC	3 cut(s)	408, 703, 1222
MaeI	CTAG	2 cut(s)	1125, 1229
MaeIII	GTNAC	2 cut(s)	493, 1414
MalI	GATC	5 cut(s)	57, 144, 234, 239, 333
MboI	GATC	5 cut(s)	55, 142, 232, 237, 331
MfeI	CAATTG	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	473
MlyI	GAGTC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	4 cut(s)	149, 918, 1026, 1305
MslI	CAYNNNNRTG	2 cut(s)	1179, 1217
MspI	CCGG	7 cut(s)	99, 211, 223, 419, 534, 810, 1374
MspR9I	CCNGG	3 cut(s)	100, 212, 224
MunI	CAATTG	1 cut(s)	409
Mva1269I	GAATGC	2 cut(s)	577, 1021
MvnI	CGCG	2 cut(s)	75, 141
MwoI	GCNNNNNNNGC	3 cut(s)	91, 405, 1087
NciI	CCSGG	3 cut(s)	100, 212, 224
NdeII	GATC	5 cut(s)	55, 142, 232, 237, 331
NlaIII	CATG	3 cut(s)	567, 1178, 1479
NlaIV	GGNNCC	2 cut(s)	417, 1101
NmuCI	GTSAC	2 cut(s)	493, 1414
NspV	TTCGAA	1 cut(s)	569
PctI	GAATGC	2 cut(s)	577, 1021
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	3 cut(s)	31, 683, 1121
PflFI	GACNNNGTC	2 cut(s)	212, 224
PflMI	CCANNNNNTGG	1 cut(s)	1261
PkrI	GCNGC	3 cut(s)	6, 77, 775
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PsiI	TTATAA	1 cut(s)	939
PspN4I	GGNNCC	2 cut(s)	417, 1101
PspPI	GGNCC	3 cut(s)	208, 220, 416
PstNI	CAGNNNCTG	1 cut(s)	1096
PsyI	GACNNNGTC	2 cut(s)	212, 224
PvuI	CGATCG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	1112
RsaNI	GTAC	1 cut(s)	1111
RseI	CAYNNNNRTG	2 cut(s)	1179, 1217
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	149, 918, 1026, 1305
SatI	GCNGC	3 cut(s)	5, 76, 774
Sau3AI	GATC	5 cut(s)	55, 142, 232, 237, 331
Sau96I	GGNCC	3 cut(s)	208, 220, 416
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	3 cut(s)	100, 212, 224
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	3 cut(s)	408, 703, 1222
SfuI	TTCGAA	1 cut(s)	569
SinI	GGWCC	2 cut(s)	208, 220
SmiMI	CAYNNNNRTG	2 cut(s)	1179, 1217
SsiI	CCGC	7 cut(s)	5, 75, 78, 139, 387, 431, 773
SspMI	CTAG	2 cut(s)	1125, 1229
StyD4I	CCNGG	3 cut(s)	98, 210, 222
StyI	CCWWGG	2 cut(s)	1132, 1255
TaaI	ACNGT	6 cut(s)	159, 673, 898, 1115, 1296, 1414
TauI	GCSGC	3 cut(s)	7, 78, 776
TfiI	GAWTC	3 cut(s)	31, 683, 1121
Tru1I	TTAA	4 cut(s)	149, 918, 1026, 1305
Tru9I	TTAA	4 cut(s)	149, 918, 1026, 1305
TscAI	CASTG	1 cut(s)	1224
TseFI	GTSAC	2 cut(s)	493, 1414
Tsp45I	GTSAC	2 cut(s)	493, 1414
TspDTI	ATGAA	4 cut(s)	452, 1191, 1209, 1263
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	1 cut(s)	1224
Tth111I	GACNNNGTC	2 cut(s)	212, 224
Van91I	CCANNNNNTGG	1 cut(s)	1261
VpaK11BI	GGWCC	2 cut(s)	208, 220
XapI	RAATTY	5 cut(s)	310, 373, 980, 1046, 1336
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	2 cut(s)	1125, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.