Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

295355 .. 298656

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCCCTAGAAGTCAAGAAAATATCTTCCCCTCTTCGTTCGGAAGAGATCGAGAATTTCATGGCCGGCGAAGATGATCATGGTGTTTCGGAAAACACTGATTCTCGGATTTCGGATGCGGAAAGTTCTGCTGAGGAATCGGCCGGTGGCAGGTGTAGATATTTGACTTCGGTTATTGTGGCGGTGGCGAAGGTGTTTGCGGTGGTGGTTTTGGCTATGTGCACCACCAAGCTCGCCGTTGGGATCACATTGTCAGCTTTTCTGCTTCTGCTTTTGTTTATGGAAGGTAAGCACTTTTCTTGTTTAATGAAAACTTGCTCGAATGCAAAATCGGCTTTGCAATATATGGCTAAAAGGATTGGCTATGCAATATTGGTTTTGAGGAGTGATGTGGTTGTGAAAGAAAAGAGTGATGGTGTTGTGTTTGAATTGGTTGAACCTGGGGTTGAATCAGACGTTGAATCAGAATCTTCAATTGAAGAGATTGAGGTTGTGGAGGTTAAGAGTAGTGGTAGTGTGTGTATTGATGAAGGTAATAGTCATATGAGCTTGATTGAGTATTTGGTTGTGGATGATGAGAAGTGGAAGAAGATTGAGGCGGGTGATCATACTGATGACTTATCGGTTTCGGTTGGTAGGAAGAGTAAGGGTAGAAAGAAGTCTGTGCCTGAGATGGGAGCAAAGTTTATCAAAAAGTTCGTACCTAAGAAATTGCGTAAGAAGAGTAAGAAGCATCAGTATGGGACGGAGCCGGAGCCAAATCCAAAGCCAGGTACTGTAGTGAAGTATGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.04

Weight (kDa)

6.27

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	141
AciI	CCGC	4 cut(s)	119, 182, 200, 599
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	2 cut(s)	63, 141
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	2 cut(s)	702, 775
AfiI	CCNNNNNNNGG	3 cut(s)	150, 674, 770
AgsI	TTSAA	6 cut(s)	428, 437, 449, 461, 474, 479
AjnI	CCWGG	2 cut(s)	439, 769
AluBI	AGCT	3 cut(s)	232, 257, 549
AluI	AGCT	3 cut(s)	232, 257, 549
Alw21I	GWGCWC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	3 cut(s)	3, 63, 141
ApaLI	GTGCAC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
Bbv12I	GWGCWC	1 cut(s)	224
BbvCI	CCTCAGC	1 cut(s)	132
BccI	CCATC	2 cut(s)	407, 667
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	2 cut(s)	441, 771
BclI	TGATCA	2 cut(s)	76, 604
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	777
BfuAI	ACCTGC	1 cut(s)	141
Bme1390I	CCNGG	2 cut(s)	441, 771
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	750, 756
BmrFI	CCNGG	2 cut(s)	441, 771
BmsI	GCATC	2 cut(s)	106, 742
Bpu10I	CCTNAGC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 674, 770
Bse118I	RCCGGY	2 cut(s)	65, 143
BseBI	CCWGG	2 cut(s)	441, 771
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	2 cut(s)	121, 577
BseLI	CCNNNNNNNGG	3 cut(s)	150, 674, 770
BseMII	CTCAG	2 cut(s)	123, 660
BseRI	GAGGAG	1 cut(s)	397
BseSI	GKGCMC	1 cut(s)	224
BseX3I	CGGCCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	5, 65, 143
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	66, 144, 752
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	3 cut(s)	150, 674, 770
BsmFI	GGGAC	1 cut(s)	757
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	3 cut(s)	5, 65, 143
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	4 cut(s)	48, 76, 243, 604
BspACI	CCGC	4 cut(s)	119, 182, 200, 599
BspANI	GGCC	3 cut(s)	5, 65, 143
BspCNI	CTCAG	2 cut(s)	124, 661
BspLI	GGNNCC	2 cut(s)	750, 756
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	251
BsrFI	RCCGGY	2 cut(s)	65, 143
BssAI	RCCGGY	2 cut(s)	65, 143
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	4 cut(s)	48, 76, 243, 604
Bst2UI	CCWGG	2 cut(s)	441, 771
Bst4CI	ACNGT	1 cut(s)	778
Bst6I	CTCTTC	5 cut(s)	39, 39, 474, 635, 716
BstC8I	GCNNGC	2 cut(s)	67, 234
BstDEI	CTNAG	3 cut(s)	132, 669, 705
BstF5I	GGATG	2 cut(s)	121, 577
BstKTI	GATC	4 cut(s)	51, 79, 246, 607
BstMBI	GATC	4 cut(s)	48, 76, 243, 604
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	2 cut(s)	441, 771
BstSCI	CCNGG	2 cut(s)	439, 769
BstSFI	CTRYAG	1 cut(s)	777
BstSLI	GKGCMC	1 cut(s)	224
BstZI	CGGCCG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	5, 65, 143
BtsCI	GGATG	2 cut(s)	121, 577
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	67, 234
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr10I	RCCGGY	2 cut(s)	65, 143
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	701, 774
CviAII	CATG	2 cut(s)	61, 80
CviQI	GTAC	2 cut(s)	701, 774
DdeI	CTNAG	3 cut(s)	132, 669, 705
DpnI	GATC	4 cut(s)	50, 78, 245, 606
DpnII	GATC	4 cut(s)	48, 76, 243, 604
EaeI	YGGCCR	2 cut(s)	63, 141
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	5 cut(s)	39, 39, 474, 635, 716
EarI	CTCTTC	5 cut(s)	39, 39, 474, 635, 716
EclXI	CGGCCG	1 cut(s)	141
Eco52I	CGGCCG	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	439, 769
FaeI	CATG	2 cut(s)	64, 83
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	2 cut(s)	60, 79
FauI	CCCGC	1 cut(s)	592
FauNDI	CATATG	1 cut(s)	543
FbaI	TGATCA	2 cut(s)	76, 604
FokI	GGATG	2 cut(s)	128, 584
FspBI	CTAG	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	5, 65, 143
HapII	CCGG	3 cut(s)	66, 144, 752
Hin1II	CATG	2 cut(s)	64, 83
HinfI	GANTC	5 cut(s)	101, 137, 449, 461, 467
HpaII	CCGG	3 cut(s)	66, 144, 752
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	6 cut(s)	43, 91, 108, 115, 454, 466
Hpy188III	TCNNGA	2 cut(s)	16, 52
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	184, 278, 524
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	4 cut(s)	222, 326, 340, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	132, 669, 705
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	2 cut(s)	64, 83
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Ksp22I	TGATCA	2 cut(s)	76, 604
Kzo9I	GATC	4 cut(s)	48, 76, 243, 604
LmnI	GCTCC	3 cut(s)	677, 748, 754
LpnPI	CCDG	9 cut(s)	79, 136, 157, 426, 453, 681, 756, 765, 783
LweI	GCATC	2 cut(s)	106, 742
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	456
MalI	GATC	4 cut(s)	50, 78, 245, 606
MboI	GATC	4 cut(s)	48, 76, 243, 604
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	5 cut(s)	55, 428, 474, 710, 793
MnlI	CCTC	6 cut(s)	42, 127, 375, 481, 490, 589
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	2 cut(s)	305, 501
MslI	CAYNNNNRTG	2 cut(s)	612, 738
MspI	CCGG	3 cut(s)	66, 144, 752
MspR9I	CCNGG	2 cut(s)	441, 771
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	441, 771
MwoI	GCNNNNNNNGC	1 cut(s)	332
NaeI	GCCGGC	1 cut(s)	67
NdeI	CATATG	1 cut(s)	543
NdeII	GATC	4 cut(s)	48, 76, 243, 604
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	64, 83
NlaIV	GGNNCC	2 cut(s)	750, 756
PaqCI	CACCTGC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	328
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	5 cut(s)	101, 137, 449, 461, 467
Psp6I	CCWGG	2 cut(s)	439, 769
PspGI	CCWGG	2 cut(s)	439, 769
PspN4I	GGNNCC	2 cut(s)	750, 756
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	702, 775
RsaNI	GTAC	2 cut(s)	701, 774
RseI	CAYNNNNRTG	2 cut(s)	612, 738
SaqAI	TTAA	2 cut(s)	305, 501
Sau3AI	GATC	4 cut(s)	48, 76, 243, 604
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	441, 771
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	106, 742
SfcI	CTRYAG	1 cut(s)	777
SmiMI	CAYNNNNRTG	2 cut(s)	612, 738
Sse9I	AATT	5 cut(s)	55, 428, 474, 710, 793
SsiI	CCGC	4 cut(s)	119, 182, 200, 599
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	439, 769
TaaI	ACNGT	1 cut(s)	778
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	51, 320
TasI	AATT	5 cut(s)	55, 428, 474, 710, 793
TfiI	GAWTC	5 cut(s)	101, 137, 449, 461, 467
Tru1I	TTAA	2 cut(s)	305, 501
Tru9I	TTAA	2 cut(s)	305, 501
TscAI	CASTG	1 cut(s)	103
TspDTI	ATGAA	3 cut(s)	49, 323, 543
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	55
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.