Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001702.1

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

14463 .. 19211

Gene Structure 4749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001702.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atgagctcgctgcttctattctttccaaggtatcaaatcggcacagttatcaaattggcttcgcctccgtctccgatctcgacctctccctcctctcgccttggagccatggcgctcctcttacaccgacaggctatccacaaagggcttttggaagtaccgcaatctaaacaagtcctcttctggccttcttccgatgagccttcatttgggtttttgattttcatgtcctccgactccgttccctccacaggcacacaaatctatccgcttcctactcatatgcatggagggaatggaaaggctgcttacatcaatacagaaggaactttgtatccttggttttgtccgtcccgtttaacatttcctatagttatggattcggtgatttctctctttcgagtggatgttactggaagaggagaacttggagatcgccagatatctctgcgtcaaaaaccgccatcggttgagaaaacagtcgaaaaagaacaggaagaagaaaaattcggaaatcccgttgaccgggtctgtgatccgatcatctcgtgttccgaaaagggttcctgtgatttgtcgattttggtggtacccagttcgggagagatcgagaatttcatggccggcgaagatgatcatggtgtttcggaaaacactgattctcggatttcggatgcggaaagttctgttgaggaatcggcccgtggcagctgtagatatttgacttcggttattgtggcggtggcgaaggtgtttgcggtggtggttttggctatgtgcaccaccaagctcgccgttgggatcacattgtcagcttttctgcttctgcttttgtttatggaaggtaagcacttttcttgtttaatgaaaacttgctcgaatgcgaaatcggccttgcaatatatggctaaaaggatcggctttgcaatattggttttgaggagtgatgtgattgtgaaagaaaagagtgatggtgttgtgtttgaattggctgaacctagggttgaatcagacgttgaatcagactcttcaattgaagagattgaggttgtggaggttaagagtagtggtagtgtgtgtattgatgaaggtaatagtcatatgagcttgattgagtatttggttgtcgatgatgagaagtggaagaagattgaggcgggtgatcatactgatgacttgtcggtttcgcttggtaagaagagtaagggtagaaagaagtctgtgcctgagatgggagcaaagtttatcaaaaagtttgtgcctaagaaattgcgtaagaagagtaagaagcatcagtacgggacggagccggagccggagctagagccaaagccaagtactgtagtgaagtttgtgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

453

Amino Acids

49.73

Weight (kDa)

6.07

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	589
AccB1I	GGYRCC	1 cut(s)	589
AciI	CCGC	7 cut(s)	161, 269, 461, 677, 740, 758, 1157
AclWI	GGATC	3 cut(s)	530, 809, 923
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	2 cut(s)	506, 613
AfaI	GTAC	4 cut(s)	159, 591, 1298, 1339
AfiI	CCNNNNNNNGG	5 cut(s)	209, 251, 525, 599, 1232
AgsI	TTSAA	5 cut(s)	986, 1007, 1019, 1032, 1037
AloI	GAACNNNNNNTCC	2 cut(s)	319, 351
AluBI	AGCT	6 cut(s)	6, 711, 790, 815, 1107, 1321
AluI	AGCT	6 cut(s)	6, 711, 790, 815, 1107, 1321
Alw21I	GWGCWC	2 cut(s)	8, 782
Alw26I	GTCTC	1 cut(s)	75
Alw44I	GTGCAC	1 cut(s)	778
AlwI	GGATC	3 cut(s)	530, 809, 923
AoxI	GGCC	4 cut(s)	185, 621, 699, 891
ApaLI	GTGCAC	1 cut(s)	778
ApeKI	GCWGC	3 cut(s)	10, 305, 708
ApoI	RAATTY	2 cut(s)	506, 613
Asp718I	GGTACC	1 cut(s)	589
AspA2I	CCTAGG	1 cut(s)	998
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	700
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	397, 1172
AvrII	CCTAGG	1 cut(s)	998
BaeGI	GKGCMC	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	1280, 1312
BauI	CACGAG	1 cut(s)	547
Bbv12I	GWGCWC	2 cut(s)	8, 782
BbvI	GCAGC	2 cut(s)	292, 720
BccI	CCATC	3 cut(s)	472, 965, 1225
BceAI	ACGGC	1 cut(s)	779
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	2 cut(s)	634, 1162
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	999, 1322
BfmI	CTRYAG	3 cut(s)	369, 712, 1341
BfoI	RGCGCY	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	3 cut(s)	11, 306, 709
BlnI	CCTAGG	1 cut(s)	998
BlsI	GCNGC	3 cut(s)	12, 307, 710
BmcAI	AGTACT	1 cut(s)	1339
Bme1390I	CCNGG	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	5 cut(s)	106, 565, 591, 1308, 1314
BmrFI	CCNGG	1 cut(s)	527
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	2 cut(s)	664, 1300
BmuI	ACTGGG	1 cut(s)	588
BpuMI	CCSGG	1 cut(s)	527
BsaJI	CCNNGG	6 cut(s)	26, 100, 108, 338, 703, 998
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 251, 525, 599, 1232
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	2 cut(s)	418, 594
BseDI	CCNNGG	6 cut(s)	26, 100, 108, 338, 703, 998
BseGI	GGATG	2 cut(s)	412, 679
BseLI	CCNNNNNNNGG	5 cut(s)	209, 251, 525, 599, 1232
BseMII	CTCAG	1 cut(s)	1218
BseNI	ACTGG	2 cut(s)	418, 594
BseRI	GAGGAG	4 cut(s)	82, 107, 435, 955
BseSI	GKGCMC	1 cut(s)	782
BseXI	GCAGC	2 cut(s)	292, 720
BshFI	GGCC	4 cut(s)	187, 623, 701, 893
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	2 cut(s)	8, 782
BsiSI	CCGG	4 cut(s)	526, 624, 1310, 1316
BslFI	GGGAC	2 cut(s)	337, 1315
BslI	CCNNNNNNNGG	5 cut(s)	209, 251, 525, 599, 1232
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	337, 1315
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	4 cut(s)	187, 623, 701, 893
Bsp1286I	GDGCHC	2 cut(s)	8, 782
Bsp143I	GATC	9 cut(s)	75, 433, 535, 540, 606, 634, 801, 915, 1162
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	7 cut(s)	161, 269, 461, 677, 740, 758, 1157
BspANI	GGCC	4 cut(s)	187, 623, 701, 893
BspCNI	CTCAG	1 cut(s)	1219
BspLI	GGNNCC	5 cut(s)	106, 565, 591, 1308, 1314
BspPI	GGATC	3 cut(s)	530, 809, 923
BspT107I	GGYRCC	1 cut(s)	589
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	2 cut(s)	418, 594
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	6 cut(s)	26, 100, 108, 338, 703, 998
BssMI	GATC	9 cut(s)	75, 433, 535, 540, 606, 634, 801, 915, 1162
BssSI	CACGAG	1 cut(s)	547
BssT1I	CCWWGG	5 cut(s)	26, 100, 108, 338, 998
Bst2BI	CACGAG	1 cut(s)	547
Bst4CI	ACNGT	3 cut(s)	46, 481, 1342
Bst6I	CTCTTC	6 cut(s)	185, 412, 1032, 1033, 1193, 1274
BstC8I	GCNNGC	3 cut(s)	8, 625, 792
BstDEI	CTNAG	2 cut(s)	1227, 1263
BstDSI	CCRYGG	2 cut(s)	108, 703
BstF5I	GGATG	2 cut(s)	412, 679
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	9 cut(s)	78, 436, 538, 543, 609, 637, 804, 918, 1165
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	9 cut(s)	75, 433, 535, 540, 606, 634, 801, 915, 1162
BstMWI	GCNNNNNNNGC	1 cut(s)	890
BstSCI	CCNGG	1 cut(s)	525
BstSFI	CTRYAG	3 cut(s)	369, 712, 1341
BstSLI	GKGCMC	1 cut(s)	782
BstV1I	GCAGC	2 cut(s)	292, 720
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	187, 623, 701, 893
BtgI	CCRYGG	2 cut(s)	108, 703
BtsCI	GGATG	2 cut(s)	412, 679
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	3 cut(s)	8, 625, 792
CfoI	GCGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	700
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	4 cut(s)	158, 590, 1297, 1338
CviAII	CATG	5 cut(s)	109, 226, 287, 619, 638
CviQI	GTAC	4 cut(s)	158, 590, 1297, 1338
DdeI	CTNAG	2 cut(s)	1227, 1263
DpnI	GATC	9 cut(s)	77, 435, 537, 542, 608, 636, 803, 917, 1164
DpnII	GATC	9 cut(s)	75, 433, 535, 540, 606, 634, 801, 915, 1162
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	6 cut(s)	185, 412, 1032, 1033, 1193, 1274
EarI	CTCTTC	6 cut(s)	185, 412, 1032, 1033, 1193, 1274
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	5 cut(s)	26, 100, 108, 338, 998
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	5 cut(s)	26, 100, 108, 338, 998
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	5 cut(s)	26, 100, 108, 338, 998
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	5 cut(s)	112, 229, 290, 622, 641
FaqI	GGGAC	2 cut(s)	337, 1315
FatI	CATG	5 cut(s)	108, 225, 286, 618, 637
FauI	CCCGC	1 cut(s)	1150
FauNDI	CATATG	2 cut(s)	282, 1101
FbaI	TGATCA	2 cut(s)	634, 1162
Fnu4HI	GCNGC	3 cut(s)	11, 306, 709
FokI	GGATG	2 cut(s)	419, 686
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	11, 306, 709
FspBI	CTAG	2 cut(s)	999, 1322
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	3 cut(s)	11, 306, 709
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	187, 623, 701, 893
HapII	CCGG	4 cut(s)	526, 624, 1310, 1316
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	5 cut(s)	112, 229, 290, 622, 641
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	7 cut(s)	236, 380, 659, 695, 1007, 1019, 1025
HpaII	CCGG	4 cut(s)	526, 624, 1310, 1316
HphI	GGTGA	2 cut(s)	397, 1172
Hpy166II	GTNNAC	2 cut(s)	523, 780
Hpy188III	TCNNGA	3 cut(s)	79, 600, 610
Hpy8I	GTNNAC	2 cut(s)	523, 780
HpyAV	CCTTC	6 cut(s)	198, 213, 317, 742, 836, 1082
HpyCH4III	ACNGT	3 cut(s)	46, 481, 1342
HpyCH4IV	ACGT	1 cut(s)	1014
HpyCH4V	TGCA	4 cut(s)	286, 780, 898, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	890
HpyF3I	CTNAG	2 cut(s)	1227, 1263
HpySE526I	ACGT	1 cut(s)	1014
Hsp92II	CATG	5 cut(s)	112, 229, 290, 622, 641
HspAI	GCGC	1 cut(s)	113
KpnI	GGTACC	1 cut(s)	593
KroI	GCCGGC	1 cut(s)	623
KroNI	GCCGGC	1 cut(s)	625
Ksp22I	TGATCA	2 cut(s)	634, 1162
Kzo9I	GATC	9 cut(s)	75, 433, 535, 540, 606, 634, 801, 915, 1162
LmnI	GCTCC	6 cut(s)	104, 120, 1235, 1306, 1312, 1318
Lsp1109I	GCAGC	2 cut(s)	292, 720
LweI	GCATC	2 cut(s)	664, 1300
MaeI	CTAG	2 cut(s)	999, 1322
MaeII	ACGT	1 cut(s)	1014
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	9 cut(s)	77, 435, 537, 542, 608, 636, 803, 917, 1164
MboI	GATC	9 cut(s)	75, 433, 535, 540, 606, 634, 801, 915, 1162
MfeI	CAATTG	1 cut(s)	1032
MhlI	GDGCHC	2 cut(s)	8, 782
MluCI	AATT	7 cut(s)	53, 506, 613, 986, 1032, 1268, 1357
MlyI	GAGTC	2 cut(s)	230, 1019
MmeI	TCCRAC	1 cut(s)	258
Mph1103I	ATGCAT	1 cut(s)	288
MroNI	GCCGGC	1 cut(s)	623
MseI	TTAA	3 cut(s)	359, 863, 1059
MslI	CAYNNNNRTG	2 cut(s)	285, 1170
MspA1I	CMGCKG	1 cut(s)	711
MspI	CCGG	4 cut(s)	526, 624, 1310, 1316
MspR9I	CCNGG	1 cut(s)	527
MunI	CAATTG	1 cut(s)	1032
Mva1269I	GAATGC	1 cut(s)	886
MwoI	GCNNNNNNNGC	1 cut(s)	890
NaeI	GCCGGC	1 cut(s)	625
NciI	CCSGG	1 cut(s)	527
NcoI	CCATGG	1 cut(s)	108
NdeI	CATATG	2 cut(s)	282, 1101
NdeII	GATC	9 cut(s)	75, 433, 535, 540, 606, 634, 801, 915, 1162
NgoMIV	GCCGGC	1 cut(s)	623
NlaIII	CATG	5 cut(s)	112, 229, 290, 622, 641
NlaIV	GGNNCC	5 cut(s)	106, 565, 591, 1308, 1314
NsiI	ATGCAT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PctI	GAATGC	1 cut(s)	886
PdiI	GCCGGC	1 cut(s)	625
PfeI	GAWTC	5 cut(s)	380, 659, 695, 1007, 1019
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	12, 307, 710
PleI	GAGTC	2 cut(s)	230, 1019
PpsI	GAGTC	2 cut(s)	230, 1019
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	5 cut(s)	106, 565, 591, 1308, 1314
PspPI	GGNCC	1 cut(s)	700
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	711
RsaI	GTAC	4 cut(s)	159, 591, 1298, 1339
RsaNI	GTAC	4 cut(s)	158, 590, 1297, 1338
RseI	CAYNNNNRTG	2 cut(s)	285, 1170
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	359, 863, 1059
SatI	GCNGC	3 cut(s)	11, 306, 709
Sau3AI	GATC	9 cut(s)	75, 433, 535, 540, 606, 634, 801, 915, 1162
Sau96I	GGNCC	1 cut(s)	700
ScaI	AGTACT	1 cut(s)	1339
SchI	GAGTC	2 cut(s)	230, 1019
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	2 cut(s)	8, 782
SfaNI	GCATC	2 cut(s)	664, 1300
SfcI	CTRYAG	3 cut(s)	369, 712, 1341
SmiMI	CAYNNNNRTG	2 cut(s)	285, 1170
Sse9I	AATT	7 cut(s)	53, 506, 613, 986, 1032, 1268, 1357
SsiI	CCGC	7 cut(s)	161, 269, 461, 677, 740, 758, 1157
SspI	AATATT	1 cut(s)	930
SspMI	CTAG	2 cut(s)	999, 1322
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	525
StyI	CCWWGG	5 cut(s)	26, 100, 108, 338, 998
TaaI	ACNGT	3 cut(s)	46, 481, 1342
TaiI	ACGT	1 cut(s)	1017
TaqI	TCGA	7 cut(s)	80, 400, 483, 578, 609, 878, 1128
TasI	AATT	7 cut(s)	53, 506, 613, 986, 1032, 1268, 1357
TatI	WGTACW	1 cut(s)	1337
TfiI	GAWTC	5 cut(s)	380, 659, 695, 1007, 1019
Tru1I	TTAA	3 cut(s)	359, 863, 1059
Tru9I	TTAA	3 cut(s)	359, 863, 1059
TscAI	CASTG	1 cut(s)	661
TseI	GCWGC	3 cut(s)	10, 305, 708
TspDTI	ATGAA	5 cut(s)	195, 214, 607, 881, 1101
TspGWI	ACGGA	4 cut(s)	57, 229, 339, 1319
TspRI	CASTG	1 cut(s)	661
Tth111I	GACNNNGTC	1 cut(s)	527
VneI	GTGCAC	1 cut(s)	778
XapI	RAATTY	2 cut(s)	506, 613
XmaJI	CCTAGG	1 cut(s)	998
XspI	CTAG	2 cut(s)	999, 1322
ZrmI	AGTACT	1 cut(s)	1339
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.