Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Reverse (-)

82083302 .. 82085684

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGCCGCTCCCATGGAAGAAAACCCGGGTGGGGCGGATTTCCCAAATGGTGGCGGATCTACAGTCCCCGAAAAAAGGCGGATCCCTAGTTGTGCAGACTGGATTCCCTGCTTCTCTTATAGATCTCTTCGTCAAAAACCGCGATCGGTTGAGAAAACGGTCGAAAAAGAACAACAAGAAGAAGAATTCGGAAAAAATGTCGGATTTTGACTCTGTTGACCGGGTCTCCGATCCGATCGTGTCCTGTTCTGAAAAGGGTTCCGGTGATTCGTCGATTTTGGTGGTACCCAGTTCGGGAGAGATCGAGAATTTCATCGCCGGAGAAGATGGTCATGGTGTTTCGGAAGACACTGGTTCTCGGGTTTCGGGTGAAATCGAGGCGGGAAGTTCTGGAATTGTTGTTGAGGAATCGGGCCGCGGAAGTCGTGGAGATTTGACTTCGGTTTTTGTGGCGGTGGCGAAGGTGTTTGCGGTGGTGGTTTTGGCTCTGTGCACCACCAAATTCGCCGTTGGGATCACGCTGTCTGCTTTTCTGCTTTTGTTTCTGGAGTGCGTGGGTAAGCACTTTTCTTGGTTAGCGAAACCTTGCTCGAATGCGAAATCGGCTTTGCAATATATGGCTAAAAGGATCGGCTATGCAGTATTGGTTTTGAGGAGTGATGTGATTGTGAAAGAAAAGAGTGATGGTGTTGTGTTTGAAATGGTTGAACCTGGGGTTGAATCAGACTCTTCAGTTGAAGAGATTGAGGTTGTGGAGCTTAAGAGTAGTGGTAGTGTGCGTATTGATGAAGGTATTGGTCAGAAGAGTTTGATTGAGTATTTGACTATGGATGGTGAGAAGTCGGAGAAGATTGAGACGGGTGATCATACAGATGACTTGTCGGTTTCGGTTGGTAAGAAGAGTAAGAGTAAGGGTAGAAAGAGGTGTGTGTCTAATATGGGAGCAAAGCTTATCAAGAGGTTTGTGCCTAAGAAATTGCGTAAGAAGAGTAAGAAGAATCAGTCTGGGGCGGAGCCGGAGCCAAAGCCAAGTAGTGAAGTTTGTGTTGACATAGTAGAAGAGGGATTGGTAGAAAAAGAAAGCCAAAGAGAAGGGTTCAGTGCTGAGGAAGAAGAAAGTGAAAACAGTTCAATGGTGTTAGTAAATTCAGTAAACAAGTGTGAAAAACAAGAAGCTGATGGAATAGTAACTTCATTGATTGTTGGAAAGAAGGGAACAGAAAGCAAAGGGAATTTTGGGTATCTGATTCTGTTTTTGATAGCTCTTGCTGGACTTGTTGGAGGTCGGGTTTTAGCTCTGATGCTTATAATCACTTGGTGCTTTATGTTGAAGGTAGTTACAGAGTCTGTGATCACTGATCATATAATCACCAGAATTCTTGCTTTTTATATCACTCCTAAATTGGCAACCGATTGCTCCTTGGCAATTGGTTTGATTATTCTTCTTGTCTCTGAAACTTTCAGCTTATTGACCTGCCTTTCCATAAAAGTTGCCCGACATGCTGTGAGCTTGGTTGGGAAGGTGGTGTTTTTCATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

513

Amino Acids

55.46

Weight (kDa)

8.5

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1307
Acc36I	ACCTGC	1 cut(s)	1481
Acc65I	GGTACC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	2 cut(s)	141, 417
AclWI	GGATC	6 cut(s)	63, 75, 88, 224, 521, 635
AcsI	RAATTY	6 cut(s)	184, 307, 500, 1144, 1231, 1374
AcuI	CTGAAG	1 cut(s)	714
AdeI	CACNNNGTG	1 cut(s)	1317
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	4 cut(s)	30, 49, 74, 293
AflII	CTTAAG	1 cut(s)	758
AgsI	TTSAA	6 cut(s)	698, 707, 719, 737, 1131, 1330
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	7 cut(s)	757, 949, 1175, 1262, 1295, 1464, 1509
AluI	AGCT	7 cut(s)	757, 949, 1175, 1262, 1295, 1464, 1509
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	3 cut(s)	229, 848, 1453
Alw44I	GTGCAC	1 cut(s)	490
AlwI	GGATC	6 cut(s)	63, 75, 88, 224, 521, 635
AlwNI	CAGNNNCTG	1 cut(s)	1346
Ama87I	CYCGRG	2 cut(s)	24, 357
AoxI	GGCC	1 cut(s)	412
ApaLI	GTGCAC	1 cut(s)	490
ApoI	RAATTY	6 cut(s)	184, 307, 500, 1144, 1231, 1374
Asp718I	GGTACC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	3 cut(s)	25, 26, 221
AsuHPI	GGTGA	5 cut(s)	275, 380, 845, 872, 1360
AvaI	CYCGRG	2 cut(s)	24, 357
BaeGI	GKGCMC	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	1104
BccI	CCATC	4 cut(s)	320, 677, 824, 1172
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	711
BclI	TGATCA	3 cut(s)	862, 1350, 1357
BcnI	CCSGG	3 cut(s)	25, 26, 221
BcoDI	GTCTC	3 cut(s)	229, 848, 1453
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	1481
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	2 cut(s)	5, 415
BlsI	GCNGC	2 cut(s)	6, 416
Bme1390I	CCNGG	4 cut(s)	25, 26, 221, 711
BmeT110I	CYCGRG	2 cut(s)	24, 357
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	5 cut(s)	82, 259, 285, 1014, 1020
BmrFI	CCNGG	4 cut(s)	25, 26, 221, 711
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	1290
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	1104
BpuMI	CCSGG	3 cut(s)	25, 26, 221
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	5 cut(s)	11, 24, 415, 710, 1419
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 1272, 1302
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 49, 74, 293
Bse1I	ACTGG	3 cut(s)	103, 288, 355
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	5 cut(s)	11, 24, 415, 710, 1419
BseGI	GGATG	1 cut(s)	835
BseLI	CCNNNNNNNGG	4 cut(s)	30, 49, 74, 293
BseMII	CTCAG	1 cut(s)	1095
BseNI	ACTGG	3 cut(s)	103, 288, 355
BseRI	GAGGAG	1 cut(s)	667
BseSI	GKGCMC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	141, 417
Bsh1285I	CGRYCG	3 cut(s)	145, 161, 237
BshFI	GGCC	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	283
BsiEI	CGRYCG	3 cut(s)	145, 161, 237
BsiHKAI	GWGCWC	1 cut(s)	494
BsiHKCI	CYCGRG	2 cut(s)	24, 357
BsiSI	CCGG	5 cut(s)	25, 220, 261, 318, 1016
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	4 cut(s)	30, 49, 74, 293
BsmAI	GTCTC	3 cut(s)	229, 848, 1453
BsmBI	CGTCTC	1 cut(s)	848
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	2 cut(s)	24, 357
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	1 cut(s)	1096
BspFNI	CGCG	2 cut(s)	141, 417
BspLI	GGNNCC	5 cut(s)	82, 259, 285, 1014, 1020
BspMI	ACCTGC	1 cut(s)	1481
BspPI	GGATC	6 cut(s)	63, 75, 88, 224, 521, 635
BspT107I	GGYRCC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	7
BsrI	ACTGG	3 cut(s)	103, 288, 355
BssECI	CCNNGG	5 cut(s)	11, 24, 415, 710, 1419
BssT1I	CCWWGG	2 cut(s)	11, 1419
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	63, 159, 1127
Bst6I	CTCTTC	7 cut(s)	131, 732, 733, 797, 893, 980, 1053
BstAFI	CTTAAG	1 cut(s)	758
BstDEI	CTNAG	3 cut(s)	969, 1104, 1539
BstDSI	CCRYGG	2 cut(s)	11, 415
BstF5I	GGATG	1 cut(s)	835
BstFNI	CGCG	2 cut(s)	141, 417
BstMAI	GTCTC	3 cut(s)	229, 848, 1453
BstMCI	CGRYCG	3 cut(s)	145, 161, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 1499
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	1 cut(s)	1502
BstSCI	CCNGG	4 cut(s)	23, 24, 219, 709
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	2 cut(s)	141, 417
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	3 cut(s)	55, 80, 121
BstYI	RGATCY	3 cut(s)	55, 80, 121
BsuRI	GGCC	1 cut(s)	414
BtgI	CCRYGG	2 cut(s)	11, 415
BtgZI	GCGATG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	835
BtsIMutI	CAGTG	3 cut(s)	348, 1105, 1353
BveI	ACCTGC	1 cut(s)	1481
CaiI	CAGNNNCTG	1 cut(s)	1346
Cfr13I	GGNCC	1 cut(s)	412
Cfr42I	CCGCGG	1 cut(s)	418
Cfr9I	CCCGGG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	3 cut(s)	12, 332, 1499
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	3 cut(s)	969, 1104, 1539
DraIII	CACNNNGTG	1 cut(s)	1317
Eam1104I	CTCTTC	7 cut(s)	131, 732, 733, 797, 893, 980, 1053
EarI	CTCTTC	7 cut(s)	131, 732, 733, 797, 893, 980, 1053
EciI	GGCGGA	4 cut(s)	49, 68, 93, 1025
Eco130I	CCWWGG	2 cut(s)	11, 1419
Eco31I	GGTCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	714
Eco88I	CYCGRG	2 cut(s)	24, 357
EcoRI	GAATTC	2 cut(s)	184, 1374
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	2 cut(s)	11, 1419
ErhI	CCWWGG	2 cut(s)	11, 1419
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	3 cut(s)	15, 335, 1502
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	3 cut(s)	11, 331, 1498
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	3 cut(s)	862, 1350, 1357
Fnu4HI	GCNGC	2 cut(s)	5, 415
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	2 cut(s)	5, 415
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	5, 415
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	5 cut(s)	25, 220, 261, 318, 1016
Hin1II	CATG	3 cut(s)	15, 335, 1502
HincII	GTYRAC	2 cut(s)	217, 1048
HindII	GTYRAC	2 cut(s)	217, 1048
HindIII	AAGCTT	1 cut(s)	947
HinfI	GANTC	9 cut(s)	102, 209, 266, 407, 719, 725, 997, 1246, 1343
HpaII	CCGG	5 cut(s)	25, 220, 261, 318, 1016
HphI	GGTGA	5 cut(s)	275, 380, 845, 872, 1360
Hpy166II	GTNNAC	4 cut(s)	217, 492, 1048, 1153
Hpy188III	TCNNGA	5 cut(s)	294, 304, 390, 545, 955
Hpy8I	GTNNAC	4 cut(s)	217, 492, 1048, 1153
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	6 cut(s)	454, 782, 1085, 1204, 1324, 1513
HpyCH4III	ACNGT	3 cut(s)	63, 159, 1127
HpyCH4V	TGCA	4 cut(s)	94, 492, 610, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 1499
HpyF3I	CTNAG	3 cut(s)	969, 1104, 1539
Hsp92II	CATG	3 cut(s)	15, 335, 1502
KpnI	GGTACC	1 cut(s)	287
Ksp22I	TGATCA	3 cut(s)	862, 1350, 1357
KspI	CCGCGG	1 cut(s)	418
LmnI	GCTCC	6 cut(s)	12, 754, 941, 1012, 1018, 1421
LweI	GCATC	1 cut(s)	1290
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	1186, 1336
MbiI	CCGCTC	1 cut(s)	7
MfeI	CAATTG	1 cut(s)	1425
MflI	RGATCY	3 cut(s)	55, 80, 121
MhlI	GDGCHC	1 cut(s)	494
MlyI	GAGTC	3 cut(s)	203, 719, 1352
MmeI	TCCRAC	4 cut(s)	180, 822, 1183, 1258
MnlI	CCTC	9 cut(s)	370, 397, 645, 739, 915, 951, 1054, 1099, 1274
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	870
MspA1I	CMGCKG	1 cut(s)	417
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	5 cut(s)	25, 220, 261, 318, 1016
MspR9I	CCNGG	4 cut(s)	25, 26, 221, 711
MunI	CAATTG	1 cut(s)	1425
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	2 cut(s)	141, 417
MwoI	GCNNNNNNNGC	2 cut(s)	602, 1499
NciI	CCSGG	3 cut(s)	25, 26, 221
NcoI	CCATGG	1 cut(s)	11
NlaIII	CATG	3 cut(s)	15, 335, 1502
NlaIV	GGNNCC	5 cut(s)	82, 259, 285, 1014, 1020
NspI	RCATGY	1 cut(s)	1502
PctI	GAATGC	1 cut(s)	598
PfeI	GAWTC	6 cut(s)	102, 266, 407, 719, 997, 1246
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	6, 416
Ple19I	CGATCG	2 cut(s)	145, 237
PleI	GAGTC	3 cut(s)	203, 719, 1351
PpsI	GAGTC	3 cut(s)	203, 719, 1351
PsiI	TTATAA	1 cut(s)	1307
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	5 cut(s)	82, 259, 285, 1014, 1020
PspPI	GGNCC	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	1346
PsuI	RGATCY	3 cut(s)	55, 80, 121
PsyI	GACNNNGTC	1 cut(s)	221
PvuI	CGATCG	2 cut(s)	145, 237
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	870
SacII	CCGCGG	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	2 cut(s)	5, 415
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	3 cut(s)	203, 719, 1352
ScrFI	CCNGG	4 cut(s)	25, 26, 221, 711
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	1290
SfcI	CTRYAG	1 cut(s)	59
Sfr303I	CCGCGG	1 cut(s)	418
SgrBI	CCGCGG	1 cut(s)	418
SmaI	CCCGGG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	23, 24, 219, 709
StyI	CCWWGG	2 cut(s)	11, 1419
TaaI	ACNGT	3 cut(s)	63, 159, 1127
TaqI	TCGA	5 cut(s)	161, 272, 303, 375, 590
TauI	GCSGC	2 cut(s)	7, 417
TfiI	GAWTC	6 cut(s)	102, 266, 407, 719, 997, 1246
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	3 cut(s)	355, 1105, 1360
TspDTI	ATGAA	4 cut(s)	301, 801, 1182, 1522
TspMI	CCCGGG	1 cut(s)	24
TspRI	CASTG	3 cut(s)	355, 1105, 1360
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	758
VneI	GTGCAC	1 cut(s)	490
XapI	RAATTY	6 cut(s)	184, 307, 500, 1144, 1231, 1374
XceI	RCATGY	1 cut(s)	1502
XmaI	CCCGGG	1 cut(s)	24
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.