Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Reverse (-)

26678187 .. 26679662

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGCCGCTTCCGTGGAAGAAGACGAGGGCGAATCGGATTTCTCAATTCGTCGCCGATCTTCAGTCGCCGAAGCGCGGCGGCTCGCTCGTCGTGCAGACCGGGTTTCCCACCTCTCTCATCGACCTCTTCTTCAAGAACCGCGATCACTTAAAGAAACCGTCGAAAAAGCATAAGAACAAGAGCAAGAAGAGAGAGAGTCGGGTCGAGGACCGGGTCGATGATCGGATCACTCTGAATTGTGAACTGGGTTCGGGCGATTTGCCGATTTTGGTGAAACCCAGTTCGCCAAAGGTCGAGAATTTGAAGCCCAGAGAAGCTGATCACGGCGATGAAGCTACTGGGGTTGAAAATCGTAAGAAGAATTGTGTTGTTGGCGGTGAGGATTGCATCGGTGGCAATTGGGGGCCGGTTCTGACGGCGGTGATGAAGATGTTTGTGGTGGTGGTTTTGGCTCTCAGCACCAAGAAGCTCGTCGTTGGGGTCACATTGTCTGCTTTTTTGCTTCTGCTTCTCGAATACACCGGTAAGCACTTGGCTTTGTTCTTGAAACCATGTTCGAATGCGAAATCTGTGATGGGTCAGAGATTGTCTGCGTTTTTATTGTTTTTGAATGGTTTCGAGAGTGATGATTTGAAGGGGGTGATTGCTAGAGAAAGGACCGTGTTTTTAGATTCTGCCATTGAAGAGATTGAGATTGTTGATGCTAACAAGAAGGGAAGATTGATTGAGTTGCTCCATATGGATTGTGAGAACGAAAAGGTGGCGGAGAAGGGAAGTGTTTGCGTTGATAAAACTTCCGGCGAAAAAAGTATGGTTGAATTGCTTGGAATGGAATGTAAGAAGAAGAGGGTGGTGGATAAGAGAAGGGTTTGTGTTGATAAGACTGTCGAGGATGTGTCATTGGTTAAGTTATTGGGGAAGGATTATAAGAAGGTAAAGCTCGTGGAAGGTGGCGAAGATGGAGGTGAATTTGTTGGGGATAAGAAGAGTAAGGGTAGCAAGAATGCTAAGATTAAAGCTAAACTTATCAAGAAATTTGTGCCTAAGAAGTTGCGTAGAAAGGGTAAGCCAAACGAGCAGGAGCTGAAGCCTGTGCTGTACGGTGGAGATTCTAGTTTCCTGGGAGTTGGTAAGGTAGAAGGATGTGAAGCACAAGAAGACCATGAAGATGTGAAGGAGGAGGAACACGAAAGCGAAAACATGTCGGTGTTTTCACTAGATGCAGAAGAGAAGTCTGAAATCCAAGGATTGGATAGAGTTTCTGATCACGGTGAAGGATCATTGGCTGGCGGAGAAACAACATTGGTTGTTGAAAAGAAGGGAAGAGAAGGAAAAGAAGGGAATTTCGGGTATCTGTTTCTCTTCCTCATTGTTCTTGCCGGACTTTTTGGAGGTCGGCTTGTCGCCCTTTTGCTTACAGTCACTTTCTGTTTTTTGTCGAAGTTGATTGGAAGACTGGTAAAATTATGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

492

Amino Acids

54.17

Weight (kDa)

9.03

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	927
AccB7I	CCANNNNNTGG	1 cut(s)	1249
AccII	CGCG	2 cut(s)	75, 141
AciI	CCGC	8 cut(s)	5, 75, 78, 139, 375, 419, 764, 1290
AclWI	GGATC	2 cut(s)	233, 1285
AcsI	RAATTY	4 cut(s)	298, 968, 1034, 1342
AcuI	CTGAAG	2 cut(s)	44, 1106
AfaI	GTAC	1 cut(s)	1100
AfiI	CCNNNNNNNGG	2 cut(s)	74, 1249
AflIII	ACRYGT	1 cut(s)	1200
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	9 cut(s)	133, 304, 347, 547, 610, 634, 683, 818, 1313
AjnI	CCWGG	1 cut(s)	1119
AluBI	AGCT	6 cut(s)	317, 335, 469, 940, 1019, 1084
AluI	AGCT	6 cut(s)	317, 335, 469, 940, 1019, 1084
AlwI	GGATC	2 cut(s)	233, 1285
AlwNI	CAGNNNCTG	1 cut(s)	1084
AoxI	GGCC	1 cut(s)	404
ApoI	RAATTY	4 cut(s)	298, 968, 1034, 1342
AsiGI	ACCGGT	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	208, 404, 657
AsuC2I	CCSGG	2 cut(s)	100, 212
AsuHPI	GGTGA	6 cut(s)	283, 389, 433, 652, 977, 1283
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	208, 657
BauI	CACGAG	1 cut(s)	941
BbsI	GAAGAC	3 cut(s)	26, 1164, 1459
BccI	CCATC	2 cut(s)	568, 953
BceAI	ACGGC	2 cut(s)	340, 432
BciT130I	CCWGG	1 cut(s)	1121
BclI	TGATCA	2 cut(s)	319, 1264
BcnI	CCSGG	2 cut(s)	100, 212
BfaI	CTAG	3 cut(s)	648, 1113, 1217
BisI	GCNGC	3 cut(s)	5, 76, 79
BlsI	GCNGC	3 cut(s)	6, 77, 80
Bme1390I	CCNGG	3 cut(s)	100, 212, 1121
Bme18I	GGWCC	2 cut(s)	208, 657
BmgT120I	GGNCC	3 cut(s)	208, 404, 657
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	3 cut(s)	100, 212, 1121
BmrI	ACTGGG	3 cut(s)	254, 273, 348
BmsI	GCATC	3 cut(s)	396, 691, 1210
BmuI	ACTGGG	3 cut(s)	254, 273, 348
BpiI	GAAGAC	3 cut(s)	26, 1164, 1459
Bpu14I	TTCGAA	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	100, 212
BsaJI	CCNNGG	3 cut(s)	11, 1120, 1243
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 1249
Bse118I	RCCGGY	2 cut(s)	406, 521
Bse1I	ACTGG	4 cut(s)	249, 279, 343, 1461
BseBI	CCWGG	1 cut(s)	1121
BseDI	CCNNGG	3 cut(s)	11, 1120, 1243
BseGI	GGATG	2 cut(s)	898, 1148
BseLI	CCNNNNNNNGG	2 cut(s)	74, 1249
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	4 cut(s)	249, 279, 343, 1461
BseRI	GAGGAG	1 cut(s)	1193
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	75, 141
BshFI	GGCC	1 cut(s)	406
BshTI	ACCGGT	1 cut(s)	521
BsiSI	CCGG	6 cut(s)	99, 211, 407, 522, 798, 1380
BslI	CCNNNNNNNGG	2 cut(s)	74, 1249
BsmI	GAATGC	2 cut(s)	565, 1009
BsnI	GGCC	1 cut(s)	406
Bsp119I	TTCGAA	1 cut(s)	557
Bsp143I	GATC	7 cut(s)	55, 142, 220, 225, 319, 1264, 1277
BspACI	CCGC	8 cut(s)	5, 75, 78, 139, 375, 419, 764, 1290
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	468
BspFNI	CGCG	2 cut(s)	75, 141
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	233, 1285
BspT104I	TTCGAA	1 cut(s)	557
BsrFI	RCCGGY	2 cut(s)	406, 521
BsrI	ACTGG	4 cut(s)	249, 279, 343, 1461
BssAI	RCCGGY	2 cut(s)	406, 521
BssECI	CCNNGG	3 cut(s)	11, 1120, 1243
BssMI	GATC	7 cut(s)	55, 142, 220, 225, 319, 1264, 1277
BssSI	CACGAG	1 cut(s)	941
BssT1I	CCWWGG	1 cut(s)	1243
Bst2BI	CACGAG	1 cut(s)	941
Bst2UI	CCWGG	1 cut(s)	1121
Bst4CI	ACNGT	6 cut(s)	159, 661, 886, 1103, 1271, 1420
Bst6I	CTCTTC	8 cut(s)	131, 182, 678, 839, 980, 1221, 1318, 1367
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	83, 1288
BstDEI	CTNAG	3 cut(s)	455, 1008, 1044
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	898, 1148
BstFNI	CGCG	2 cut(s)	75, 141
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	7 cut(s)	58, 145, 223, 228, 322, 1267, 1280
BstMBI	GATC	7 cut(s)	55, 142, 220, 225, 319, 1264, 1277
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 393, 1075
BstNI	CCWGG	1 cut(s)	1121
BstNSI	RCATGY	1 cut(s)	1204
BstSCI	CCNGG	3 cut(s)	98, 210, 1119
BstUI	CGCG	2 cut(s)	75, 141
BstV2I	GAAGAC	3 cut(s)	26, 1164, 1459
BsuRI	GGCC	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	11
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	898, 1148
Cac8I	GCNNGC	2 cut(s)	83, 1288
CaiI	CAGNNNCTG	1 cut(s)	1084
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	2 cut(s)	406, 521
Cfr13I	GGNCC	3 cut(s)	208, 404, 657
Csp6I	GTAC	1 cut(s)	1099
CspAI	ACCGGT	1 cut(s)	521
CviAII	CATG	4 cut(s)	552, 1163, 1201, 1473
CviQI	GTAC	1 cut(s)	1099
DdeI	CTNAG	3 cut(s)	455, 1008, 1044
DpnI	GATC	7 cut(s)	57, 144, 222, 227, 321, 1266, 1279
DpnII	GATC	7 cut(s)	55, 142, 220, 225, 319, 1264, 1277
Eam1104I	CTCTTC	8 cut(s)	131, 182, 678, 839, 980, 1221, 1318, 1367
EarI	CTCTTC	8 cut(s)	131, 182, 678, 839, 980, 1221, 1318, 1367
EciI	GGCGGA	2 cut(s)	779, 1305
Eco130I	CCWWGG	1 cut(s)	1243
Eco47I	GGWCC	2 cut(s)	208, 657
Eco57I	CTGAAG	2 cut(s)	44, 1106
EcoRII	CCWGG	1 cut(s)	1119
EcoT14I	CCWWGG	1 cut(s)	1243
ErhI	CCWWGG	1 cut(s)	1243
FaeI	CATG	4 cut(s)	555, 1166, 1204, 1476
FalI	AAGNNNNNCTT	2 cut(s)	1008, 1040
FatI	CATG	4 cut(s)	551, 1162, 1200, 1472
FauNDI	CATATG	1 cut(s)	738
FbaI	TGATCA	2 cut(s)	319, 1264
Fnu4HI	GCNGC	3 cut(s)	5, 76, 79
FokI	GGATG	2 cut(s)	905, 1155
Fsp4HI	GCNGC	3 cut(s)	5, 76, 79
FspBI	CTAG	3 cut(s)	648, 1113, 1217
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	5, 76, 79
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	6 cut(s)	99, 211, 407, 522, 798, 1380
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	4 cut(s)	555, 1166, 1204, 1476
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	31, 196, 671, 1109
HpaII	CCGG	6 cut(s)	99, 211, 407, 522, 798, 1380
HphI	GGTGA	6 cut(s)	283, 389, 433, 652, 977, 1283
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	7 cut(s)	36, 225, 234, 414, 582, 1237, 1264
Hpy188III	TCNNGA	6 cut(s)	133, 295, 512, 544, 619, 1030
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	4 cut(s)	53, 92, 163, 476
HpyCH4III	ACNGT	6 cut(s)	159, 661, 886, 1103, 1271, 1420
HpyCH4V	TGCA	3 cut(s)	94, 387, 1223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 393, 1075
HpyF3I	CTNAG	3 cut(s)	455, 1008, 1044
Hsp92II	CATG	4 cut(s)	555, 1166, 1204, 1476
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	2 cut(s)	319, 1264
Kzo9I	GATC	7 cut(s)	55, 142, 220, 225, 319, 1264, 1277
LmnI	GCTCC	2 cut(s)	738, 1081
LweI	GCATC	3 cut(s)	396, 691, 1210
MaeI	CTAG	3 cut(s)	648, 1113, 1217
MaeIII	GTNAC	2 cut(s)	481, 1420
MalI	GATC	7 cut(s)	57, 144, 222, 227, 321, 1266, 1279
MboI	GATC	7 cut(s)	55, 142, 220, 225, 319, 1264, 1277
MfeI	CAATTG	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	3 cut(s)	149, 906, 1014
MslI	CAYNNNNRTG	3 cut(s)	327, 1167, 1205
MspI	CCGG	6 cut(s)	99, 211, 407, 522, 798, 1380
MspR9I	CCNGG	3 cut(s)	100, 212, 1121
MunI	CAATTG	1 cut(s)	397
Mva1269I	GAATGC	2 cut(s)	565, 1009
MvaI	CCWGG	1 cut(s)	1121
MvnI	CGCG	2 cut(s)	75, 141
MwoI	GCNNNNNNNGC	3 cut(s)	91, 393, 1075
NciI	CCSGG	2 cut(s)	100, 212
NdeI	CATATG	1 cut(s)	738
NdeII	GATC	7 cut(s)	55, 142, 220, 225, 319, 1264, 1277
NlaIII	CATG	4 cut(s)	555, 1166, 1204, 1476
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	481, 1420
NspI	RCATGY	1 cut(s)	1204
NspV	TTCGAA	1 cut(s)	557
PciI	ACATGT	1 cut(s)	1200
PctI	GAATGC	2 cut(s)	565, 1009
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	3 cut(s)	31, 671, 1109
PflFI	GACNNNGTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	1249
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	6, 77, 80
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PscI	ACATGT	1 cut(s)	1200
PsiI	TTATAA	1 cut(s)	927
Psp6I	CCWGG	1 cut(s)	1119
PspGI	CCWGG	1 cut(s)	1119
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	3 cut(s)	208, 404, 657
PstNI	CAGNNNCTG	1 cut(s)	1084
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	1100
RsaNI	GTAC	1 cut(s)	1099
RseI	CAYNNNNRTG	3 cut(s)	327, 1167, 1205
SaqAI	TTAA	3 cut(s)	149, 906, 1014
SatI	GCNGC	3 cut(s)	5, 76, 79
Sau3AI	GATC	7 cut(s)	55, 142, 220, 225, 319, 1264, 1277
Sau96I	GGNCC	3 cut(s)	208, 404, 657
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	3 cut(s)	100, 212, 1121
SfaNI	GCATC	3 cut(s)	396, 691, 1210
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	2 cut(s)	208, 657
SmiMI	CAYNNNNRTG	3 cut(s)	327, 1167, 1205
SsiI	CCGC	8 cut(s)	5, 75, 78, 139, 375, 419, 764, 1290
SspMI	CTAG	3 cut(s)	648, 1113, 1217
StyD4I	CCNGG	3 cut(s)	98, 210, 1119
StyI	CCWWGG	1 cut(s)	1243
TaaI	ACNGT	6 cut(s)	159, 661, 886, 1103, 1271, 1420
TauI	GCSGC	3 cut(s)	7, 78, 81
TfiI	GAWTC	3 cut(s)	31, 671, 1109
Tru1I	TTAA	3 cut(s)	149, 906, 1014
Tru9I	TTAA	3 cut(s)	149, 906, 1014
TseFI	GTSAC	2 cut(s)	481, 1420
Tsp45I	GTSAC	2 cut(s)	481, 1420
TspDTI	ATGAA	3 cut(s)	345, 440, 1179
Tth111I	GACNNNGTC	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	1249
VpaK11BI	GGWCC	2 cut(s)	208, 657
XapI	RAATTY	4 cut(s)	298, 968, 1034, 1342
XceI	RCATGY	1 cut(s)	1204
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	3 cut(s)	648, 1113, 1217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.