Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Reverse (-)

23447057 .. 23448553

Gene Structure 1497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGCCGCTTCCGTGGAAGAAGACCAGAGCGACACGGATTTCCCAATTCGTCGCCGACCTCCAATCGCCGAAACGCGGCGGTTCGCTTTTCGTTCAGACCGGGTTTCCCGCCTCTCTCATCGACCTCTTCGTCAAGAACCGGGATCACTTGAAGAAACCGTCGAACAAGCATAAGAACAAGAGCAAGAAGAAAGATAATCGGGTCGATGACCGGGTCGACGATCGGATCGCTCCGAATTGTGAACTGGGTTCGAGCGATTTGCCGGTTTTGGTAAAACCCAGTTCGCCAGATTCGTCAAATGTCGATTTGAAGCCCACAGAAGTTGATCATGGCGTTGAGGCTACTGAGTTTGAAAATCGTGCGGAGAATTGTGTTGTCGGTGGTGGAGAATGCGTTGACGGGATTTGGGGGGTGATTTTGATGACGGTGATGAAGATTATTGTGGTGGTGGTTTTGGCTTTGAGCACCAAGAAGCTCGTGGTTGGGATCACATTGTCCGCTTTTCTGCTTCTGCTTCTGGAATACGCGGGTAAGCACTTGGCTTTGTTTTTGAAACCATGTTTGAATGCGAAATCTGTTATGGCTCAGAGATTTTCTGCGTTTTTATTGTTTTCGAATGATTTCAATTCGAGTGATGATATGAAGGGAGTGACCGCGAGAGAAAAGACTCTGATTTTAGATTCTGCCATTGAAGAGATTGAGATTGTTGATGTTAACAAAAAGGGAAGATTGATTGAGTTGCTTGGTATGGAATGTGAGGAGACGAAACCTGCGGAGAAGGTAAGTGTTTGCGCTGATAAAACCGCCGGTGAAAAAAGTTTGGATGAGTTGCTTGGGGTGGAATGTGAGAAGAAGAGGAGGGTGGTGGATAAGAAAAGGGTTTGTGCCAATAAGACTGTCGGTGATGTGTCGTTGGTTAAGTTATTGGGGAAGGATTATCAGAAGATAAAGCTCGTGGAGGGTGGCGAAGAAGAAGGTGAATTTGTTGGGGATAAGAAGAGTAAGGGTATGAAAAATTCTAAGATTAAAGCTAAACTTATCAAGAAATTCGTGCCTAAGAAGTTGCGTCGAAGGGGAAAGCAAAACGAGCAGGAGCTGGAGCCTGTGCTGTACAGTGGCGATTCTAGTTTCCTTGGAGATTATAAGGTAGAAGGATGTGAAGAACAAGAAGAACGTGAAGATGAGAAACAAGAGGAACAAGAAAGCGAAAACAGATCGGTGTTCTCACTAGATACAGAGGAGAAGTCTGAAATCCAAGGCTCCGACGGAGTTTCTGATAACGGTGGAGGATCATTGGCTGGCGAAGTAACACCACCGGTTGTTGAAAAGAAGGGAAGAGAACGAAAAGAAGGGGGTTTTGGGTATCTGGTTCTCTTTCTTATAGTTCTTGCCGGACTTTTTGGAGGTCGGCTTGTAGCCCTCTTTCTTACAATCACTTTCTTTTTTTTGTCGAAGTTGATCGGAACTCTAAGGAGACTGGTGAAAGTATGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

499

Amino Acids

55.07

Weight (kDa)

8.33

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1143
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	3 cut(s)	75, 527, 656
AclWI	GGATC	4 cut(s)	150, 233, 494, 1297
AcsI	RAATTY	3 cut(s)	980, 1015, 1046
AfaI	GTAC	1 cut(s)	1112
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgeI	ACCGGT	1 cut(s)	1315
AgsI	TTSAA	8 cut(s)	151, 310, 353, 553, 565, 625, 692, 1325
AjuI	GAANNNNNNNTTGG	2 cut(s)	1341, 1373
AluBI	AGCT	4 cut(s)	475, 952, 1031, 1096
AluI	AGCT	4 cut(s)	475, 952, 1031, 1096
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	755, 1468
AlwI	GGATC	4 cut(s)	150, 233, 494, 1297
AlwNI	CAGNNNCTG	1 cut(s)	1096
ApoI	RAATTY	3 cut(s)	980, 1015, 1046
AsiGI	ACCGGT	1 cut(s)	1315
Asp700I	GAANNNNTTC	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	794
AsuC2I	CCSGG	3 cut(s)	100, 140, 212
AsuHPI	GGTGA	6 cut(s)	424, 439, 821, 914, 989, 1492
AsuII	TTCGAA	1 cut(s)	614
BauI	CACGAG	2 cut(s)	476, 953
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	467
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	3 cut(s)	100, 140, 212
BcoDI	GTCTC	2 cut(s)	755, 1468
BfaI	CTAG	2 cut(s)	1125, 1229
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	2 cut(s)	5, 76
BlsI	GCNGC	2 cut(s)	6, 77
Bme1390I	CCNGG	3 cut(s)	100, 140, 212
BmiI	GGNNCC	2 cut(s)	1101, 1261
BmrFI	CCNGG	3 cut(s)	100, 140, 212
BmrI	ACTGGG	2 cut(s)	254, 273
BmuI	ACTGGG	2 cut(s)	254, 273
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	1118
Bpu14I	TTCGAA	1 cut(s)	614
BpuMI	CCSGG	3 cut(s)	100, 140, 212
BsaJI	CCNNGG	3 cut(s)	11, 1132, 1255
BsaWI	WCCGGW	1 cut(s)	1315
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	3 cut(s)	262, 806, 1315
Bse1I	ACTGG	3 cut(s)	249, 279, 1482
BseDI	CCNNGG	3 cut(s)	11, 1132, 1255
BseGI	GGATG	2 cut(s)	829, 1160
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	336, 599
BseNI	ACTGG	3 cut(s)	249, 279, 1482
BseRI	GAGGAG	3 cut(s)	773, 871, 1253
Bsh1236I	CGCG	3 cut(s)	75, 527, 656
Bsh1285I	CGRYCG	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	1315
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	467
BsiSI	CCGG	7 cut(s)	99, 139, 211, 263, 807, 1316, 1392
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	755, 1468
BsmBI	CGTCTC	1 cut(s)	755
BsmI	GAATGC	2 cut(s)	395, 571
Bsp119I	TTCGAA	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp1407I	TGTACA	1 cut(s)	1110
Bsp143I	GATC	8 cut(s)	142, 220, 225, 325, 486, 1214, 1289, 1458
BspCNI	CTCAG	2 cut(s)	337, 598
BspFNI	CGCG	3 cut(s)	75, 527, 656
BspLI	GGNNCC	2 cut(s)	1101, 1261
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	4 cut(s)	150, 233, 494, 1297
BspT104I	TTCGAA	1 cut(s)	614
BsrFI	RCCGGY	3 cut(s)	262, 806, 1315
BsrGI	TGTACA	1 cut(s)	1110
BsrI	ACTGG	3 cut(s)	249, 279, 1482
BssAI	RCCGGY	3 cut(s)	262, 806, 1315
BssECI	CCNNGG	3 cut(s)	11, 1132, 1255
BssMI	GATC	8 cut(s)	142, 220, 225, 325, 486, 1214, 1289, 1458
BssSI	CACGAG	2 cut(s)	476, 953
BssT1I	CCWWGG	2 cut(s)	1132, 1255
Bst2BI	CACGAG	2 cut(s)	476, 953
Bst4CI	ACNGT	5 cut(s)	159, 427, 898, 1115, 1283
Bst6I	CTCTTC	5 cut(s)	131, 687, 848, 992, 1330
BstAUI	TGTACA	1 cut(s)	1110
BstBI	TTCGAA	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	1300
BstDEI	CTNAG	5 cut(s)	345, 585, 1020, 1056, 1469
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	829, 1160
BstFNI	CGCG	3 cut(s)	75, 527, 656
BstHHI	GCGC	1 cut(s)	794
BstKTI	GATC	8 cut(s)	145, 223, 228, 328, 489, 1217, 1292, 1461
BstMAI	GTCTC	2 cut(s)	755, 1468
BstMBI	GATC	8 cut(s)	142, 220, 225, 325, 486, 1214, 1289, 1458
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	1087
BstSCI	CCNGG	3 cut(s)	98, 138, 210
BstUI	CGCG	3 cut(s)	75, 527, 656
BstV2I	GAAGAC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	829, 1160
BtsIMutI	CAGTG	1 cut(s)	1120
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	1300
CaiI	CAGNNNCTG	1 cut(s)	1096
CfoI	GCGC	1 cut(s)	794
Cfr10I	RCCGGY	3 cut(s)	262, 806, 1315
CseI	GACGC	1 cut(s)	1055
Csp6I	GTAC	1 cut(s)	1111
CspAI	ACCGGT	1 cut(s)	1315
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	3 cut(s)	329, 558, 1494
CviQI	GTAC	1 cut(s)	1111
DdeI	CTNAG	5 cut(s)	345, 585, 1020, 1056, 1469
DpnI	GATC	8 cut(s)	144, 222, 227, 327, 488, 1216, 1291, 1460
DpnII	GATC	8 cut(s)	142, 220, 225, 325, 486, 1214, 1289, 1458
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	5 cut(s)	131, 687, 848, 992, 1330
EarI	CTCTTC	5 cut(s)	131, 687, 848, 992, 1330
Eco130I	CCWWGG	2 cut(s)	1132, 1255
EcoT14I	CCWWGG	2 cut(s)	1132, 1255
ErhI	CCWWGG	2 cut(s)	1132, 1255
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	3 cut(s)	332, 561, 1497
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FatI	CATG	3 cut(s)	328, 557, 1493
FauI	CCCGC	2 cut(s)	115, 520
FbaI	TGATCA	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	5, 76
FokI	GGATG	2 cut(s)	836, 1167
Fsp4HI	GCNGC	2 cut(s)	5, 76
FspBI	CTAG	2 cut(s)	1125, 1229
GlaI	GCGC	1 cut(s)	793
GluI	GCNGC	2 cut(s)	5, 76
GsuI	CTGGAG	1 cut(s)	1118
HapII	CCGG	7 cut(s)	99, 139, 211, 263, 807, 1316, 1392
HgaI	GACGC	1 cut(s)	1055
HhaI	GCGC	1 cut(s)	794
Hin1II	CATG	3 cut(s)	332, 561, 1497
Hin6I	GCGC	1 cut(s)	792
HinP1I	GCGC	1 cut(s)	792
HincII	GTYRAC	3 cut(s)	217, 397, 715
HindII	GTYRAC	3 cut(s)	217, 397, 715
HinfI	GANTC	4 cut(s)	290, 667, 680, 1121
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	7 cut(s)	99, 139, 211, 263, 807, 1316, 1392
HphI	GGTGA	6 cut(s)	424, 439, 821, 914, 989, 1492
Hpy166II	GTNNAC	4 cut(s)	217, 242, 397, 715
Hpy188III	TCNNGA	3 cut(s)	133, 518, 1042
Hpy8I	GTNNAC	4 cut(s)	217, 242, 397, 715
Hpy99I	CGWCG	5 cut(s)	53, 163, 221, 1071, 1268
HpyAV	CCTTC	8 cut(s)	637, 772, 925, 968, 1065, 1145, 1324, 1343
HpyCH4III	ACNGT	5 cut(s)	159, 427, 898, 1115, 1283
HpyCH4IV	ACGT	1 cut(s)	1174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1087
HpyF3I	CTNAG	5 cut(s)	345, 585, 1020, 1056, 1469
HpySE526I	ACGT	1 cut(s)	1174
Hsp92II	CATG	3 cut(s)	332, 561, 1497
HspAI	GCGC	1 cut(s)	792
Ksp22I	TGATCA	1 cut(s)	325
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	8 cut(s)	142, 220, 225, 325, 486, 1214, 1289, 1458
LmnI	GCTCC	4 cut(s)	235, 1093, 1099, 1265
MaeI	CTAG	2 cut(s)	1125, 1229
MaeII	ACGT	1 cut(s)	1174
MaeIII	GTNAC	2 cut(s)	649, 1306
MalI	GATC	8 cut(s)	144, 222, 227, 327, 488, 1216, 1291, 1460
MboI	GATC	8 cut(s)	142, 220, 225, 325, 486, 1214, 1289, 1458
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	7 cut(s)	44, 235, 367, 625, 980, 1015, 1046
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	1 cut(s)	1287
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	3 cut(s)	714, 918, 1026
MspI	CCGG	7 cut(s)	99, 139, 211, 263, 807, 1316, 1392
MspR9I	CCNGG	3 cut(s)	100, 140, 212
Mva1269I	GAATGC	2 cut(s)	395, 571
MvnI	CGCG	3 cut(s)	75, 527, 656
MwoI	GCNNNNNNNGC	1 cut(s)	1087
NciI	CCSGG	3 cut(s)	100, 140, 212
NdeII	GATC	8 cut(s)	142, 220, 225, 325, 486, 1214, 1289, 1458
NlaIII	CATG	3 cut(s)	332, 561, 1497
NlaIV	GGNNCC	2 cut(s)	1101, 1261
NmuCI	GTSAC	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 290
PctI	GAATGC	2 cut(s)	395, 571
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	3 cut(s)	290, 680, 1121
PflFI	GACNNNGTC	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	1315
PkrI	GCNGC	2 cut(s)	6, 77
Ple19I	CGATCG	1 cut(s)	223
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PsiI	TTATAA	1 cut(s)	1143
PspN4I	GGNNCC	2 cut(s)	1101, 1261
PstNI	CAGNNNCTG	1 cut(s)	1096
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	1112
RsaNI	GTAC	1 cut(s)	1111
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	714, 918, 1026
SatI	GCNGC	2 cut(s)	5, 76
Sau3AI	GATC	8 cut(s)	142, 220, 225, 325, 486, 1214, 1289, 1458
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	3 cut(s)	100, 140, 212
SduI	GDGCHC	1 cut(s)	467
SfuI	TTCGAA	1 cut(s)	614
SgrAI	CRCCGGYG	1 cut(s)	806
Sse9I	AATT	7 cut(s)	44, 235, 367, 625, 980, 1015, 1046
SspMI	CTAG	2 cut(s)	1125, 1229
StyD4I	CCNGG	3 cut(s)	98, 138, 210
StyI	CCWWGG	2 cut(s)	1132, 1255
TaaI	ACNGT	5 cut(s)	159, 427, 898, 1115, 1283
TaiI	ACGT	1 cut(s)	1177
TasI	AATT	7 cut(s)	44, 235, 367, 625, 980, 1015, 1046
TatI	WGTACW	1 cut(s)	1110
TauI	GCSGC	2 cut(s)	7, 78
TfiI	GAWTC	3 cut(s)	290, 680, 1121
Tru1I	TTAA	3 cut(s)	714, 918, 1026
Tru9I	TTAA	3 cut(s)	714, 918, 1026
TscAI	CASTG	1 cut(s)	1120
TseFI	GTSAC	1 cut(s)	649
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	3 cut(s)	446, 656, 1025
TspGWI	ACGGA	2 cut(s)	49, 1281
TspRI	CASTG	1 cut(s)	1120
Tth111I	GACNNNGTC	1 cut(s)	212
XapI	RAATTY	3 cut(s)	980, 1015, 1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	2 cut(s)	1125, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.