Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

12651571 .. 12653720

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGCCGCTCCCATGGAAGAAAACCCGGGTGGGGCGGATTTCCCAAATGGTGGCGGATCTACAATCCCCGAAAAAAGGCGGATCGCTAGTTGTCCAGACTGGATTCCCTGCTTCTCTTATAGATCTCTTCGTCAAAAACCGCGATCGGTTGAGAAAACGGTCGAAAAATAACAACAACAAGAAGAAGAATTCGGAAAAAAGGTCGGATTTTGACTCTGTTGACCGGGTCTCCGATCCGATCGTGTCGTGTTCTGAAAAGGGTTCCGGTGATTCGTCGATTTTGGTGGTACCCAGTTCGGGAGAGATCGAGAATTTCACCGCCGGAGAAGATGGTCGTGGTGTTTCGGAAGACACTGGTTCTCGGGCTTCGGGTGAAATCGAGGCGGGAAGTTCTGGAATTGTTGTTGAGGAATCGGGCCGTGGAAGCTGTGGAGATTTGACTTCGGTTTTTGTGGCGGTGGCGAAGGTGTTTGCGGTGGTGGCTTTGGCTCTGTGCACCACCAAGTTCGCCGTTGGGATCACGCTGTCTGCTTTTTTGCTTTTGTTTCTGGAATGCGTGGGTAAGCACTTTTCTTGTTTAGCGAAACCTTGCTCGAATGCGAAGTCGGCTTTGCAATATATGGCTAAAAGGATCGGCTATGCAGTATTGGTTTTGAGGAGTGATGTGATTGTGAAAGAAAAGAGTGATGGTGTTGTGTTTGAATTGGTTGAACCTGGGGTTGAATCAGACTCTTCATTTGAAGAGATTGAGGTCGTGGAGCTTAAGAGTAGTGGTAGTGTGCGTATTGATGAAGGTATTGGTCAGAAGAGTTTGATTGAGTATTTGAATATGGATGGTGAGAAGTCGGAGAAGATTGAGACGGGTGATCATACAGATGACTTGTCGGTTTCGGTTTGTAAGAAGAGTAAGAGTAAGGGTAGAAAGAGGTGTGTGTCTAATATGGGAGCAAAGCTTATCAAGAGGTTTATGCCTAATAAATTGCGTAAGAAGAGTAGGAAGAATCAGTCTGGGGCGGAGCCGGAGCCAAAGCCAAGCAGTGAATCTTGTGTTGACATAGTAGAAGAGGGATTGGTAGAACAAGAAAGCCAAAGAGAAGGGTTCAGTGCTGAGGAAGTAGAAAGTGAAAACAGTTCAATGGTGTCAGTAAATTCAGTAAACAAGTGTGAAAAACAAGAAGCTGATGGAATAGTAACTTCATTGATTGTTGGAAAGAAGGGAACAGAAAGCAAAGGGAATTTTGGGTATCTGATTCTGTTTTTGATAGCTCTTGCTGGACTTGTTGGAGGTCGGGTTTTAGCTCTGTTGCTTATAATCACTTGGTGCTTTATGTTGAAGGTGATTAGGTCTTGGAGCAGTTCAGGCGATATGCCCCTCCCCCTGAAAAGGTGTTCTTTCCCAATTTCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

469

Amino Acids

50.65

Weight (kDa)

8.46

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1310
Acc65I	GGTACC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	5 cut(s)	63, 88, 227, 524, 638
AcsI	RAATTY	4 cut(s)	187, 310, 1147, 1234
AdeI	CACNNNGTG	1 cut(s)	1320
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 296, 1383
AflII	CTTAAG	1 cut(s)	761
AgsI	TTSAA	7 cut(s)	701, 710, 722, 740, 826, 1134, 1333
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	6 cut(s)	426, 760, 952, 1178, 1265, 1298
AluI	AGCT	6 cut(s)	426, 760, 952, 1178, 1265, 1298
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	232, 851
Alw44I	GTGCAC	1 cut(s)	493
AlwI	GGATC	5 cut(s)	63, 88, 227, 524, 638
Ama87I	CYCGRG	2 cut(s)	24, 360
AoxI	GGCC	1 cut(s)	415
ApaLI	GTGCAC	1 cut(s)	493
ApoI	RAATTY	4 cut(s)	187, 310, 1147, 1234
ArsI	GACNNNNNNTTYG	4 cut(s)	587, 619, 719, 751
Asp718I	GGTACC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	3 cut(s)	25, 26, 224
AsuHPI	GGTGA	6 cut(s)	278, 307, 383, 848, 875, 1348
AvaI	CYCGRG	2 cut(s)	24, 360
BaeGI	GKGCMC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	497
BbvCI	CCTCAGC	1 cut(s)	1107
BccI	CCATC	4 cut(s)	323, 680, 827, 1175
BceAI	ACGGC	2 cut(s)	402, 494
BciT130I	CCWGG	1 cut(s)	714
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	3 cut(s)	25, 26, 224
BcoDI	GTCTC	2 cut(s)	232, 851
BfaI	CTAG	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	761
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	4 cut(s)	25, 26, 224, 714
BmeT110I	CYCGRG	2 cut(s)	24, 360
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	4 cut(s)	262, 288, 1017, 1023
BmrFI	CCNGG	4 cut(s)	25, 26, 224, 714
BmrI	ACTGGG	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	1107
BpuMI	CCSGG	3 cut(s)	25, 26, 224
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	11, 24, 418, 713
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 1275, 1305
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 296, 1383
Bse1I	ACTGG	3 cut(s)	103, 291, 358
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	4 cut(s)	11, 24, 418, 713
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 296, 1383
BseMII	CTCAG	1 cut(s)	1098
BseNI	ACTGG	3 cut(s)	103, 291, 358
BseRI	GAGGAG	1 cut(s)	670
BseSI	GKGCMC	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	3 cut(s)	145, 161, 240
BshFI	GGCC	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	286
BsiEI	CGRYCG	3 cut(s)	145, 161, 240
BsiHKAI	GWGCWC	1 cut(s)	497
BsiHKCI	CYCGRG	2 cut(s)	24, 360
BsiSI	CCGG	5 cut(s)	25, 223, 264, 321, 1019
BslI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 296, 1383
BsmAI	GTCTC	2 cut(s)	232, 851
BsmBI	CGTCTC	1 cut(s)	851
BsmI	GAATGC	2 cut(s)	557, 601
BsnI	GGCC	1 cut(s)	417
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	2 cut(s)	24, 360
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	1099
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	4 cut(s)	262, 288, 1017, 1023
BspPI	GGATC	5 cut(s)	63, 88, 227, 524, 638
BspT107I	GGYRCC	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	7
BsrI	ACTGG	3 cut(s)	103, 291, 358
BssECI	CCNNGG	4 cut(s)	11, 24, 418, 713
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	2 cut(s)	159, 1130
Bst6I	CTCTTC	7 cut(s)	131, 735, 736, 800, 896, 983, 1056
BstAFI	CTTAAG	1 cut(s)	761
BstDEI	CTNAG	1 cut(s)	1107
BstDSI	CCRYGG	2 cut(s)	11, 418
BstF5I	GGATG	1 cut(s)	838
BstFNI	CGCG	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	232, 851
BstMCI	CGRYCG	3 cut(s)	145, 161, 240
BstMWI	GCNNNNNNNGC	4 cut(s)	423, 479, 605, 1359
BstNI	CCWGG	1 cut(s)	714
BstSCI	CCNGG	4 cut(s)	23, 24, 222, 712
BstSLI	GKGCMC	1 cut(s)	497
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	2 cut(s)	55, 121
BstYI	RGATCY	2 cut(s)	55, 121
BsuRI	GGCC	1 cut(s)	417
BtgI	CCRYGG	2 cut(s)	11, 418
BtsCI	GGATG	1 cut(s)	838
BtsI	GCAGTG	1 cut(s)	1042
BtsIMutI	CAGTG	3 cut(s)	351, 1042, 1108
Cfr13I	GGNCC	1 cut(s)	415
Cfr9I	CCCGGG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	1 cut(s)	12
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	1107
DraIII	CACNNNGTG	1 cut(s)	1320
Eam1104I	CTCTTC	7 cut(s)	131, 735, 736, 800, 896, 983, 1056
EarI	CTCTTC	7 cut(s)	131, 735, 736, 800, 896, 983, 1056
EciI	GGCGGA	4 cut(s)	49, 68, 93, 1028
Eco130I	CCWWGG	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	232
Eco88I	CYCGRG	2 cut(s)	24, 360
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	851
FaeI	CATG	1 cut(s)	15
FalI	AAGNNNNNCTT	2 cut(s)	1375, 1407
FatI	CATG	1 cut(s)	11
FauI	CCCGC	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	845
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	5 cut(s)	25, 223, 264, 321, 1019
Hin1II	CATG	1 cut(s)	15
HincII	GTYRAC	2 cut(s)	220, 1051
HindII	GTYRAC	2 cut(s)	220, 1051
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	9 cut(s)	102, 212, 269, 410, 722, 728, 1000, 1040, 1249
HpaII	CCGG	5 cut(s)	25, 223, 264, 321, 1019
HphI	GGTGA	6 cut(s)	278, 307, 383, 848, 875, 1348
Hpy166II	GTNNAC	4 cut(s)	220, 495, 1051, 1156
Hpy188III	TCNNGA	6 cut(s)	94, 297, 307, 393, 548, 958
Hpy8I	GTNNAC	4 cut(s)	220, 495, 1051, 1156
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	5 cut(s)	457, 785, 1088, 1207, 1327
HpyCH4III	ACNGT	2 cut(s)	159, 1130
HpyCH4V	TGCA	3 cut(s)	495, 613, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	423, 479, 605, 1359
HpyF3I	CTNAG	1 cut(s)	1107
Hsp92II	CATG	1 cut(s)	15
KpnI	GGTACC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	865
LmnI	GCTCC	6 cut(s)	12, 757, 944, 1015, 1021, 1350
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	1189
MbiI	CCGCTC	1 cut(s)	7
MflI	RGATCY	2 cut(s)	55, 121
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	8 cut(s)	187, 310, 396, 701, 977, 1147, 1234, 1398
MlyI	GAGTC	2 cut(s)	206, 722
MmeI	TCCRAC	4 cut(s)	183, 825, 1186, 1261
MseI	TTAA	1 cut(s)	762
MslI	CAYNNNNRTG	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	5 cut(s)	25, 223, 264, 321, 1019
MspR9I	CCNGG	4 cut(s)	25, 26, 224, 714
Mva1269I	GAATGC	2 cut(s)	557, 601
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	4 cut(s)	423, 479, 605, 1359
NciI	CCSGG	3 cut(s)	25, 26, 224
NcoI	CCATGG	1 cut(s)	11
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	4 cut(s)	262, 288, 1017, 1023
PctI	GAATGC	2 cut(s)	557, 601
PfeI	GAWTC	7 cut(s)	102, 269, 410, 722, 1000, 1040, 1249
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	2 cut(s)	145, 240
PleI	GAGTC	2 cut(s)	206, 722
PpsI	GAGTC	2 cut(s)	206, 722
PsiI	TTATAA	1 cut(s)	1310
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	4 cut(s)	262, 288, 1017, 1023
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	55, 121
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	2 cut(s)	145, 240
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	206, 722
ScrFI	CCNGG	4 cut(s)	25, 26, 224, 714
SduI	GDGCHC	1 cut(s)	497
SmaI	CCCGGG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	8 cut(s)	187, 310, 396, 701, 977, 1147, 1234, 1398
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	23, 24, 222, 712
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	159, 1130
TaqI	TCGA	5 cut(s)	161, 275, 306, 378, 593
TasI	AATT	8 cut(s)	187, 310, 396, 701, 977, 1147, 1234, 1398
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	7 cut(s)	102, 269, 410, 722, 1000, 1040, 1249
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	3 cut(s)	358, 1042, 1108
TspDTI	ATGAA	3 cut(s)	723, 804, 1185
TspMI	CCCGGG	1 cut(s)	24
TspRI	CASTG	3 cut(s)	358, 1042, 1108
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	761
VneI	GTGCAC	1 cut(s)	493
XapI	RAATTY	4 cut(s)	187, 310, 1147, 1234
XmaI	CCCGGG	1 cut(s)	24
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.