Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007392.1

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Reverse (-)

29650 .. 30955

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007392.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1306 bp

gactggattccctgcttctcttatagatctcttcgtcaaaaaccgcgatcggttgagaaaacggtcgaaaaataacaacaagaagaagaagaattcggaaaaaaggtcggattttgactctgttgaccgggtctccgatccgatcgtgtcgtgttctgaaaagggttccggtgattcgtcgattttggtggtacccagttcgggagagatcgaaaatttcatcgccggagaagatggtcatggtgtttcggaagacactggttctcgggtttcgggtgaaatcgaggcgggaagttctggaattgttgttgaggaaacgggccgtggaagctgtggagatttgacttcggtttttgtggcggtggcgaaggtgtttgcggtggtggctttggctctgtgcaccaccaagttcgccgttgggatcacgctgtctgcttttctgcttttgtttctggaatgcgtgggtaagcacttttcttgtttagcgaaaccttgctcgaatgcgaagtcggctttgcaatatatggctaaaaggatcggctatgcagtattggttctgaggagtgatgtgattgtgaaagaaaagagtgatggtgttgtgtttgaattggttgaacctggggttgaatcagactcttcatttgaagagattgaggttgtggagctcaagagtagtggtagtgtgcgtattgatgaaggtattggtcagaagagtttgattgagtatttgaatatggatggtgagaagtcggagaagattgagacgggtgatcatacagatgacttgtcggtttcggtttgtaagaagagtaagagtaagggtagaaagaggtgtgtgtctaatatgggagcaaagcttatcaagaggtttgtgcctaagaaattgcgtaagaagaatcggtctggggcggagccggagccaaagccaagcagtgaatcttgtgttgacatagcagaagagggattggtagaacaagaaagccaaagagaagggttcagtgctgaggaagtagaaagtgaaaacagttcaatggtgtcagtaaattcagtaaacaagtgtgaaaaacaagaagctgatggaatagtaacttcattgattgttggaaagaagggaacagaaagcaaaaggaattttgggtatctgattctgtttttgatagctcttgctggacttgttggaggtcgggttttagctctgttgcttataatcacttggtgctttatgttgaaggtgattaggtcttggagcagttcaggcgatatgcccctccccctgaaaaggtgttctttcccaatttccttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

434

Amino Acids

46.89

Weight (kDa)

7.38

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1206
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccII	CGCG	1 cut(s)	46
AciI	CCGC	5 cut(s)	44, 288, 360, 378, 909
AclWI	GGATC	3 cut(s)	132, 429, 543
AcsI	RAATTY	4 cut(s)	92, 215, 1043, 1130
AdeI	CACNNNGTG	1 cut(s)	1216
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	201, 1279
AgsI	TTSAA	7 cut(s)	606, 615, 627, 645, 731, 1030, 1229
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	6 cut(s)	331, 665, 857, 1074, 1161, 1194
AluI	AGCT	6 cut(s)	331, 665, 857, 1074, 1161, 1194
Alw21I	GWGCWC	2 cut(s)	402, 667
Alw26I	GTCTC	2 cut(s)	137, 756
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	3 cut(s)	132, 429, 543
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	1 cut(s)	320
ApaLI	GTGCAC	1 cut(s)	398
ApoI	RAATTY	4 cut(s)	92, 215, 1043, 1130
ArsI	GACNNNNNNTTYG	4 cut(s)	492, 524, 624, 656
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	5 cut(s)	183, 288, 753, 780, 1244
AvaI	CYCGRG	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	667
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	2 cut(s)	402, 667
BbvCI	CCTCAGC	1 cut(s)	1003
BccI	CCATC	4 cut(s)	228, 585, 732, 1071
BceAI	ACGGC	2 cut(s)	307, 399
BciT130I	CCWGG	1 cut(s)	619
BclI	TGATCA	1 cut(s)	770
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	137, 756
BglII	AGATCT	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	129, 619
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	4 cut(s)	167, 193, 913, 919
BmrFI	CCNGG	2 cut(s)	129, 619
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	259
Bpu10I	CCTNAGC	1 cut(s)	1003
BpuEI	CTTGAG	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	323, 618
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 1171, 1201
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 1279
Bse1I	ACTGG	3 cut(s)	8, 196, 263
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	2 cut(s)	323, 618
BseGI	GGATG	1 cut(s)	743
BseLI	CCNNNNNNNGG	2 cut(s)	201, 1279
BseMII	CTCAG	2 cut(s)	549, 994
BseNI	ACTGG	3 cut(s)	8, 196, 263
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	46
Bsh1285I	CGRYCG	3 cut(s)	50, 66, 145
BshFI	GGCC	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	3 cut(s)	50, 66, 145
BsiHKAI	GWGCWC	2 cut(s)	402, 667
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	4 cut(s)	128, 169, 226, 915
BslI	CCNNNNNNNGG	2 cut(s)	201, 1279
BsmAI	GTCTC	2 cut(s)	137, 756
BsmBI	CGTCTC	1 cut(s)	756
BsmI	GAATGC	2 cut(s)	462, 506
BsnI	GGCC	1 cut(s)	322
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	402, 667
Bsp143I	GATC	8 cut(s)	26, 47, 137, 142, 208, 421, 535, 770
BspACI	CCGC	5 cut(s)	44, 288, 360, 378, 909
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	2 cut(s)	550, 995
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	4 cut(s)	167, 193, 913, 919
BspPI	GGATC	3 cut(s)	132, 429, 543
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	8, 196, 263
BssECI	CCNNGG	2 cut(s)	323, 618
BssMI	GATC	8 cut(s)	26, 47, 137, 142, 208, 421, 535, 770
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	64, 1026
Bst6I	CTCTTC	6 cut(s)	36, 640, 641, 705, 801, 952
BstDEI	CTNAG	3 cut(s)	558, 877, 1003
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	743
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	8 cut(s)	29, 50, 140, 145, 211, 424, 538, 773
BstMAI	GTCTC	2 cut(s)	137, 756
BstMBI	GATC	8 cut(s)	26, 47, 137, 142, 208, 421, 535, 770
BstMCI	CGRYCG	3 cut(s)	50, 66, 145
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 384, 510, 1255
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	127, 617
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	743
BtsI	GCAGTG	1 cut(s)	938
BtsIMutI	CAGTG	3 cut(s)	256, 938, 1004
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	656, 691
CviAII	CATG	1 cut(s)	240
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	3 cut(s)	558, 877, 1003
DpnI	GATC	8 cut(s)	28, 49, 139, 144, 210, 423, 537, 772
DpnII	GATC	8 cut(s)	26, 47, 137, 142, 208, 421, 535, 770
DraIII	CACNNNGTG	1 cut(s)	1216
Eam1104I	CTCTTC	6 cut(s)	36, 640, 641, 705, 801, 952
EarI	CTCTTC	6 cut(s)	36, 640, 641, 705, 801, 952
EciI	GGCGGA	1 cut(s)	924
Ecl136II	GAGCTC	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	667
Eco31I	GGTCTC	1 cut(s)	137
Eco53kI	GAGCTC	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	665
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	667
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	1 cut(s)	243
FalI	AAGNNNNNCTT	2 cut(s)	1271, 1303
FatI	CATG	1 cut(s)	239
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	770
FokI	GGATG	1 cut(s)	750
FriOI	GRGCYC	1 cut(s)	667
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	4 cut(s)	128, 169, 226, 915
Hin1II	CATG	1 cut(s)	243
HincII	GTYRAC	2 cut(s)	125, 947
HindII	GTYRAC	2 cut(s)	125, 947
HindIII	AAGCTT	1 cut(s)	855
HinfI	GANTC	8 cut(s)	7, 117, 174, 627, 633, 896, 936, 1145
HpaII	CCGG	4 cut(s)	128, 169, 226, 915
HphI	GGTGA	5 cut(s)	183, 288, 753, 780, 1244
Hpy166II	GTNNAC	4 cut(s)	125, 400, 947, 1052
Hpy188III	TCNNGA	5 cut(s)	202, 298, 453, 668, 863
Hpy8I	GTNNAC	4 cut(s)	125, 400, 947, 1052
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	5 cut(s)	362, 690, 984, 1103, 1223
HpyCH4III	ACNGT	2 cut(s)	64, 1026
HpyCH4V	TGCA	3 cut(s)	400, 518, 546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 384, 510, 1255
HpyF3I	CTNAG	3 cut(s)	558, 877, 1003
Hsp92II	CATG	1 cut(s)	243
KpnI	GGTACC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	770
Kzo9I	GATC	8 cut(s)	26, 47, 137, 142, 208, 421, 535, 770
LmnI	GCTCC	5 cut(s)	662, 849, 911, 917, 1246
MaeIII	GTNAC	1 cut(s)	1085
MalI	GATC	8 cut(s)	28, 49, 139, 144, 210, 423, 537, 772
MboI	GATC	8 cut(s)	26, 47, 137, 142, 208, 421, 535, 770
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	402, 667
MluCI	AATT	8 cut(s)	92, 215, 301, 606, 882, 1043, 1130, 1294
MlyI	GAGTC	2 cut(s)	111, 627
MmeI	TCCRAC	4 cut(s)	88, 730, 1082, 1157
MslI	CAYNNNNRTG	1 cut(s)	778
MspI	CCGG	4 cut(s)	128, 169, 226, 915
MspR9I	CCNGG	2 cut(s)	129, 619
Mva1269I	GAATGC	2 cut(s)	462, 506
MvaI	CCWGG	1 cut(s)	619
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	328, 384, 510, 1255
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	8 cut(s)	26, 47, 137, 142, 208, 421, 535, 770
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	4 cut(s)	167, 193, 913, 919
PctI	GAATGC	2 cut(s)	462, 506
PfeI	GAWTC	6 cut(s)	7, 174, 627, 896, 936, 1145
PflFI	GACNNNGTC	1 cut(s)	129
Ple19I	CGATCG	2 cut(s)	50, 145
PleI	GAGTC	2 cut(s)	111, 627
PpsI	GAGTC	2 cut(s)	111, 627
PsiI	TTATAA	1 cut(s)	1206
Psp124BI	GAGCTC	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	4 cut(s)	167, 193, 913, 919
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	129
PvuI	CGATCG	2 cut(s)	50, 145
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	778
SacI	GAGCTC	1 cut(s)	667
Sau3AI	GATC	8 cut(s)	26, 47, 137, 142, 208, 421, 535, 770
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	2 cut(s)	111, 627
ScrFI	CCNGG	2 cut(s)	129, 619
SduI	GDGCHC	2 cut(s)	402, 667
SmiMI	CAYNNNNRTG	1 cut(s)	778
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	8 cut(s)	92, 215, 301, 606, 882, 1043, 1130, 1294
SsiI	CCGC	5 cut(s)	44, 288, 360, 378, 909
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	2 cut(s)	127, 617
TaaI	ACNGT	2 cut(s)	64, 1026
TaqI	TCGA	5 cut(s)	66, 180, 211, 283, 498
TaqII	GACCGA	1 cut(s)	889
TasI	AATT	8 cut(s)	92, 215, 301, 606, 882, 1043, 1130, 1294
TfiI	GAWTC	6 cut(s)	7, 174, 627, 896, 936, 1145
TscAI	CASTG	3 cut(s)	263, 938, 1004
TspDTI	ATGAA	4 cut(s)	209, 628, 709, 1081
TspRI	CASTG	3 cut(s)	263, 938, 1004
Tth111I	GACNNNGTC	1 cut(s)	129
VneI	GTGCAC	1 cut(s)	398
XapI	RAATTY	4 cut(s)	92, 215, 1043, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.