Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

6372193 .. 6376419

Gene Structure 4227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGCCGCTGCTATGGAAAAAAGGGCGGATTTCCCAGATGGTGGCGGATCTCCAATCCCCGAAAAGGAGAGGCGGATCGATGGTTGTGCAGACCGGATTCCCAACCTCTCTTATAGATCTCTTCGTCAAAAACCGCGATCGGTTGAGAAAACAGTCCAAAAAAAACCAGTCTCGGAAAAATTCCCAAAAAAGTTCCGATTTTGATCCCGTTGACCGGGTCTCCGATCAGATCGCTGAAAAGGGTTCGGATGATTTGTCGATTTTGGCGGTACCCAGTTCGGGAGAGATCGAGAATTTGGTCGCTCGAAAAGATGATCATGCTGTTTCGGAAGACACTGATTCTCGGGTTTCGGATGCGGAAAGTTCTGGAATTGTCGCCGAGGAATCTCCACGTGGCGGCTCTGGAGATTTGAGTTCGGTTTTTGTGGCGGCGGCGAAGGTGTTTGCGGTGGTGGTTTTGGCTCTGTGCACTACCAAGTTCGCCGTTGGGATCACACTGTCGGCTTTCCTGCTTCTGTTTCTGGAATGTGTGGGTAAGCGCCTTTCTTGTTTAGTGAAACCTTGGTCGAATGCGAAATCGGGTTTGCAGTGTGTGGCTAGGAGGATGGGGTATGCATTGTTGGTTTTGAGGAGTGATGTGATTGTGAAAGAAAAGAGTGAGGGGGTTGTGTTTGAGTTGGTTGAACCTGGGGTTGAATCAGACTCTTCGATGGAGGAGATTGAGGTTATGAGTTGTGGTATTGTGTGTATTGACGAAGGTGTTAGTGAGATGGGTTTGAACGAGTATTTGAGTATGGATGGTGAGAAGGGGGAGAAGGTTGAAGTGGGTGATCATACGGATGACTTATCGGATTCGGTTTGTGAGAAGAGTAAGGGTAAGGGTAGAAAGAAGTTTGTGCCTAAGATGGGAGCCAAGTTCATCAAGAAGTTGGTGTCTAAGAAATTGCGCAAGAACAGTATGAAGCATCAGTCGGGGACTGAGCCAGAGCCAAAGGCAAGTACTGAAGTTTGTGAAGAGGGACTGGTAGAACATGAAGACCGAAGGGAAGGGTTTAGTGCTGAGGAAGAAGAAAGTGAGAACGGTTCACCGCTGTCGGTAAATTCAGAAAACAAGTGTGAAAAACAAGAAGCTGATGGAATAGTAACTTCGTTGATTGTTGAAAAGAAGGGAGCAGAAAGCAAAGGGAATTTTGGGTATCTCATTCTGTTTTTGATAGCTCTTGCTGGACTTATTGGAGGTCGGGTTGTAGCTCTGATGCTGACAATCACTTGGTGCTTTATGTTGAAGTTGATCAGGTATTGGAGTGGATCAGGCAATATGCTCGTCTCCATGAAAAGCTTATTGACCTACCTTTCCATAAGATTTGCACCACATGACATGAGCTTGTATGGAAACGTGGTGTTGTTCGTTGATTTCCTCAGTATTGGAACAATCTATGCGTTCTCTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

484

Amino Acids

52.76

Weight (kDa)

5.82

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	947
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccII	CGCG	1 cut(s)	135
AclWI	GGATC	5 cut(s)	54, 82, 197, 497, 1315
AcsI	RAATTY	4 cut(s)	178, 292, 1099, 1186
AcuI	CTGAAG	1 cut(s)	1023
AcvI	CACGTG	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	1272
AfaI	GTAC	2 cut(s)	270, 1000
AfiI	CCNNNNNNNGG	6 cut(s)	40, 63, 213, 278, 395, 905
AgsI	TTSAA	6 cut(s)	683, 695, 778, 821, 1160, 1285
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	5 cut(s)	1130, 1217, 1250, 1338, 1383
AluI	AGCT	5 cut(s)	1130, 1217, 1250, 1338, 1383
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	3 cut(s)	174, 223, 1330
Alw44I	GTGCAC	1 cut(s)	466
AlwI	GGATC	5 cut(s)	54, 82, 197, 497, 1315
Ama87I	CYCGRG	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	466
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	4 cut(s)	178, 292, 1099, 1186
Asp718I	GGTACC	1 cut(s)	268
AspLEI	GCGC	2 cut(s)	540, 948
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	812, 839, 1077
AvaI	CYCGRG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	268
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	2 cut(s)	336, 1041
Bbv12I	GWGCWC	1 cut(s)	470
BbvCI	CCTCAGC	1 cut(s)	1059
BccI	CCATC	8 cut(s)	31, 73, 598, 703, 763, 791, 898, 1127
BceAI	ACGGC	1 cut(s)	467
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 1303, 1337
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	3 cut(s)	313, 829, 1290
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	3 cut(s)	174, 223, 1330
BfaI	CTAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	541
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	5 cut(s)	5, 8, 397, 429, 432
BlsI	GCNGC	5 cut(s)	6, 9, 398, 430, 433
BmcAI	AGTACT	1 cut(s)	1000
Bme1390I	CCNGG	2 cut(s)	215, 687
BmeT110I	CYCGRG	1 cut(s)	342
BmiI	GGNNCC	2 cut(s)	270, 910
BmrFI	CCNGG	2 cut(s)	215, 687
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	3 cut(s)	343, 973, 1245
BmuI	ACTGGG	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	336, 1041
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	1059
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	378, 560, 686
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 1227, 1257
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 63, 213, 278, 395, 905
Bse1I	ACTGG	3 cut(s)	166, 273, 1026
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	687
BseCI	ATCGAT	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	378, 560, 686
BseGI	GGATG	5 cut(s)	253, 358, 609, 802, 844
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	6 cut(s)	40, 63, 213, 278, 395, 905
BseMII	CTCAG	3 cut(s)	969, 1050, 1432
BseNI	ACTGG	3 cut(s)	166, 273, 1026
BseRI	GAGGAG	2 cut(s)	643, 728
BseSI	GKGCMC	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	470
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	93, 214
BslFI	GGGAC	2 cut(s)	988, 1032
BslI	CCNNNNNNNGG	6 cut(s)	40, 63, 213, 278, 395, 905
BsmAI	GTCTC	3 cut(s)	174, 223, 1330
BsmBI	CGTCTC	1 cut(s)	1330
BsmFI	GGGAC	2 cut(s)	988, 1032
BsmI	GAATGC	1 cut(s)	574
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	470
BspCNI	CTCAG	3 cut(s)	970, 1051, 1431
BspDI	ATCGAT	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	270, 910
BspPI	GGATC	5 cut(s)	54, 82, 197, 497, 1315
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	3 cut(s)	166, 273, 1026
BssECI	CCNNGG	3 cut(s)	378, 560, 686
BssT1I	CCWWGG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	4 cut(s)	153, 498, 956, 1082
Bst6I	CTCTTC	4 cut(s)	125, 709, 860, 1008
BstBAI	YACGTR	1 cut(s)	392
BstDEI	CTNAG	5 cut(s)	900, 936, 978, 1059, 1418
BstF5I	GGATG	5 cut(s)	253, 358, 609, 802, 844
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	2 cut(s)	540, 948
BstMAI	GTCTC	3 cut(s)	174, 223, 1330
BstMCI	CGRYCG	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	213, 685
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	1 cut(s)	135
BstV2I	GAAGAC	2 cut(s)	336, 1041
BstX2I	RGATCY	2 cut(s)	46, 115
BstYI	RGATCY	2 cut(s)	46, 115
Bsu15I	ATCGAT	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	77
BtsCI	GGATG	5 cut(s)	253, 358, 609, 802, 844
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	3 cut(s)	333, 494, 593
CfoI	GCGC	2 cut(s)	540, 948
ClaI	ATCGAT	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	269, 999
CviAII	CATG	5 cut(s)	317, 1031, 1330, 1373, 1378
CviQI	GTAC	2 cut(s)	269, 999
DdeI	CTNAG	5 cut(s)	900, 936, 978, 1059, 1418
DraIII	CACNNNGTG	1 cut(s)	1272
Eam1104I	CTCTTC	4 cut(s)	125, 709, 860, 1008
EarI	CTCTTC	4 cut(s)	125, 709, 860, 1008
EciI	GGCGGA	3 cut(s)	40, 59, 87
Eco130I	CCWWGG	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	1023
Eco72I	CACGTG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	560
EcoT22I	ATGCAT	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	560
Esp3I	CGTCTC	1 cut(s)	1330
FaeI	CATG	5 cut(s)	320, 1034, 1333, 1376, 1381
FaqI	GGGAC	2 cut(s)	988, 1032
FatI	CATG	5 cut(s)	316, 1030, 1329, 1372, 1377
FbaI	TGATCA	3 cut(s)	313, 829, 1290
Fnu4HI	GCNGC	5 cut(s)	5, 8, 397, 429, 432
FokI	GGATG	5 cut(s)	260, 365, 616, 809, 851
Fsp4HI	GCNGC	5 cut(s)	5, 8, 397, 429, 432
FspBI	CTAG	1 cut(s)	597
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	2 cut(s)	539, 947
GluI	GCNGC	5 cut(s)	5, 8, 397, 429, 432
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	541
HapII	CCGG	2 cut(s)	93, 214
HhaI	GCGC	2 cut(s)	540, 948
Hin1II	CATG	5 cut(s)	320, 1034, 1333, 1376, 1381
Hin6I	GCGC	2 cut(s)	538, 946
HinP1I	GCGC	2 cut(s)	538, 946
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	1336
HinfI	GANTC	6 cut(s)	96, 338, 383, 695, 701, 851
HpaII	CCGG	2 cut(s)	93, 214
HphI	GGTGA	3 cut(s)	812, 839, 1077
Hpy166II	GTNNAC	3 cut(s)	211, 468, 1085
Hpy188III	TCNNGA	6 cut(s)	279, 289, 366, 402, 521, 922
Hpy8I	GTNNAC	3 cut(s)	211, 468, 1085
HpyAV	CCTTC	7 cut(s)	430, 749, 799, 808, 1035, 1040, 1159
HpyCH4III	ACNGT	4 cut(s)	153, 498, 956, 1082
HpyCH4IV	ACGT	2 cut(s)	391, 1395
HpyCH4V	TGCA	5 cut(s)	88, 468, 586, 614, 1367
HpyF3I	CTNAG	5 cut(s)	900, 936, 978, 1059, 1418
HpySE526I	ACGT	2 cut(s)	391, 1395
Hsp92II	CATG	5 cut(s)	320, 1034, 1333, 1376, 1381
HspAI	GCGC	2 cut(s)	538, 946
KpnI	GGTACC	1 cut(s)	272
Ksp22I	TGATCA	3 cut(s)	313, 829, 1290
LmnI	GCTCC	2 cut(s)	908, 1169
LweI	GCATC	3 cut(s)	343, 973, 1245
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	2 cut(s)	391, 1395
MaeIII	GTNAC	1 cut(s)	1141
MboII	GAAGA	8 cut(s)	112, 341, 696, 877, 1025, 1046, 1076, 1079
MflI	RGATCY	2 cut(s)	46, 115
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	6 cut(s)	178, 292, 369, 941, 1099, 1186
MlyI	GAGTC	1 cut(s)	695
Mph1103I	ATGCAT	1 cut(s)	616
MslI	CAYNNNNRTG	1 cut(s)	837
MspA1I	CMGCKG	2 cut(s)	7, 1090
MspI	CCGG	2 cut(s)	93, 214
MspR9I	CCNGG	2 cut(s)	215, 687
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	1 cut(s)	135
NciI	CCSGG	1 cut(s)	215
NlaIII	CATG	5 cut(s)	320, 1034, 1333, 1376, 1381
NlaIV	GGNNCC	2 cut(s)	270, 910
NmeAIII	GCCGAG	1 cut(s)	403
NsbI	TGCGCA	1 cut(s)	947
NsiI	ATGCAT	1 cut(s)	616
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	5 cut(s)	96, 338, 383, 695, 851
PflFI	GACNNNGTC	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	5 cut(s)	6, 9, 398, 430, 433
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	1 cut(s)	695
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	695
Ppu21I	YACGTR	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	685
PspCI	CACGTG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	270, 910
PsuI	RGATCY	2 cut(s)	46, 115
PsyI	GACNNNGTC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	270, 1000
RsaNI	GTAC	2 cut(s)	269, 999
RseI	CAYNNNNRTG	1 cut(s)	837
SatI	GCNGC	5 cut(s)	5, 8, 397, 429, 432
ScaI	AGTACT	1 cut(s)	1000
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	2 cut(s)	215, 687
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	3 cut(s)	343, 973, 1245
SmiMI	CAYNNNNRTG	1 cut(s)	837
Sse9I	AATT	6 cut(s)	178, 292, 369, 941, 1099, 1186
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	2 cut(s)	213, 685
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	4 cut(s)	153, 498, 956, 1082
TaiI	ACGT	2 cut(s)	394, 1398
TaqI	TCGA	6 cut(s)	77, 257, 288, 304, 566, 707
TaqII	GACCGA	1 cut(s)	1053
TasI	AATT	6 cut(s)	178, 292, 369, 941, 1099, 1186
TatI	WGTACW	1 cut(s)	998
TauI	GCSGC	4 cut(s)	7, 399, 431, 434
TfiI	GAWTC	5 cut(s)	96, 338, 383, 695, 851
TscAI	CASTG	3 cut(s)	340, 501, 593
TseI	GCWGC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	907, 974, 1047, 1346
TspGWI	ACGGA	2 cut(s)	851, 1437
TspRI	CASTG	3 cut(s)	340, 501, 593
Tth111I	GACNNNGTC	1 cut(s)	215
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	466
XapI	RAATTY	4 cut(s)	178, 292, 1099, 1186
XspI	CTAG	1 cut(s)	597
ZrmI	AGTACT	1 cut(s)	1000
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.