Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

4799227 .. 4802488

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G095400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGCCGCTTCCGTGGAAGAAGATGCGGGTGAACCGAATTTCCCAATTCGTCGCCGATCTCCAATCACCGAAACGGGGCGGTTCACTCGTGGTCCAGACTGGTTTTCCGACCTCCCTCGTCGACCTCTTCGTCAAGAACCGCGATCACTTGAAAAAGCCGTCGAAAAAGAACAAGAACAGGAAGAAGAATAACCCGTCGGCTGACCAGGTCAGCGATCGGATCACAGCGAATTGTGAACTGGGTTCGGGCAATTTCGGGATTTTGGTGCAACCCAGTTCACCAAAGGTCAAGAATTTGAGCTGGGAAGAAGGTGATCGCGGTGTTGAAGCTGGTGAGTTTCGGGTGTTGGGTGAGACCCATGTTGAGAATCGCATTGTTGATGATGAGCAATGCGTCGGTGGGAATTGGAGAGCGGTTTTGCTGGCGGTGTTGAAGATATTCGCGGTGGTGGTTTTGGCTTTGAGTACCAAGAAGCTCGCTGTTGGGGTCACATTGTCTGCTTTTCTGCTTCTGTTTCTTGAATACGCGGGTAAGCATTTGGCTTGTTTCTTCAAACCATGCTCGAAAGCGAAACCTGTTTTGCAAAACGTGGCTCAGAGGGCGTCTTCATATTTATTATTTCTGAATGGTTTTCATGAGAGTGAGGATTTGAAGGGGGTGATTGTATGTGAAAAGACTGGGGATGTTGTGTTTGAATTGGTTGATGCTACGGGTGATTCAGACTCTGCTATTGGAGAGATTCAGATTGTTGAGTCTAACAAGAAGGGAAGTGTGTGCGCTGATGAAACTGGTGGAGACAGACCTTTGATTGATTTACTTGGTGCAGATTATGAGAAGGAGAGGGTCGTGGATAAGAGAGATGTTGGTGATAAAACTTTGGTTGAGTTGCTTGGTATGGATTATGAGAAGAGGACGGTGGTGGATAAGAGAAGAGTGGGTGCAGAAAAAGCAGTCGGTGAAATAACTTTGGTTGAGTTGCTTGGTAAGGATTATAAGAAGATAAAGGTAGTGGAGGGTGGTGAAGATGGAGGTGAATTTATAGCAGATAAGAAGAGTAAGGGTGGCAAAAATTCTAACATTAAATCAAAACTTATCAAGAAATTTGTGCCTAAGAAGTTGCGCAGAAAGTGTAAGCAAAATGAACCGGAGCTGGAGCCTCTCCTAAGCAGTGATCACATGGGATATGATAAGTTAGAGGGATGTGAAGAACATGAAGACCATAAAGATGTGAAACAAGAGGAACAGGAAAGCGAAAACATGTCAGTGTTTTCTGCAGAAGAGAAAAGTGAAATCCAAGGATTTGATGGAGTTTCTGATCTTGGCGAAGGATCATTGGCTGGCGGAGAAACACCCTTGATTGTTGAAAGGAAGGGAAGAGAAGGGAATTTAGGGTATCTGGTTCTCTTTCTAATTGTTCTTGCTGGACTTTTCGGAGGTCGGATTGTAGCCCTGATGCTTACAATCACTAGCTGCTTTATGCCGAAGTTGGCTGGAAGCCTGAGGAGATCGGTAAAAATATGCCGGTGTTCTGTCCCGATCTCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

516

Amino Acids

56.53

Weight (kDa)

8.13

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc16I	TGCGCA	1 cut(s)	1121
AccBSI	CCGCTC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	4 cut(s)	141, 318, 443, 527
AclWI	GGATC	2 cut(s)	227, 1336
AcsI	RAATTY	6 cut(s)	36, 292, 1034, 1069, 1100, 1384
AcyI	GRCGYC	1 cut(s)	602
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	1257
AgsI	TTSAA	8 cut(s)	151, 326, 433, 521, 553, 652, 695, 1364
AjnI	CCWGG	1 cut(s)	204
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	300, 329, 475, 1150, 1470
AluI	AGCT	5 cut(s)	300, 329, 475, 1150, 1470
Alw26I	GTCTC	2 cut(s)	347, 789
AlwI	GGATC	2 cut(s)	227, 1336
AlwNI	CAGNNNCTG	1 cut(s)	725
ApeKI	GCWGC	1 cut(s)	1470
ApoI	RAATTY	6 cut(s)	36, 292, 1034, 1069, 1100, 1384
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	2 cut(s)	779, 1122
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	1499
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	597, 1221
BbvI	GCAGC	1 cut(s)	1457
BccI	CCATC	2 cut(s)	1019, 1298
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	206
BclI	TGATCA	1 cut(s)	1171
BcoDI	GTCTC	2 cut(s)	347, 789
BfaI	CTAG	1 cut(s)	1467
BfmI	CTRYAG	1 cut(s)	1272
BisI	GCNGC	2 cut(s)	5, 1471
BlsI	GCNGC	2 cut(s)	6, 1472
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	1155
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	3 cut(s)	248, 267, 687
BmsI	GCATC	3 cut(s)	12, 694, 1443
BmuI	ACTGGG	3 cut(s)	248, 267, 687
BpiI	GAAGAC	2 cut(s)	597, 1221
BpmI	CTGGAG	1 cut(s)	1172
Bpu10I	CCTNAGC	1 cut(s)	1163
BpuEI	CTTGAG	1 cut(s)	1525
BsaHI	GRCGYC	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	11, 1294
BsaWI	WCCGGW	1 cut(s)	1144
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	1521
Bse1I	ACTGG	5 cut(s)	103, 243, 273, 682, 793
Bse21I	CCTNAGG	1 cut(s)	1499
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	11, 1294
BseGI	GGATG	2 cut(s)	688, 1205
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	608, 1490
BseNI	ACTGG	5 cut(s)	103, 243, 273, 682, 793
BseRI	GAGGAG	1 cut(s)	1516
BseXI	GCAGC	1 cut(s)	1457
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	2 cut(s)	843, 960
Bsh1236I	CGCG	4 cut(s)	141, 318, 443, 527
Bsh1285I	CGRYCG	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	1145, 1522
BslFI	GGGAC	1 cut(s)	1517
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	347, 789
BsmFI	GGGAC	1 cut(s)	1517
Bso31I	GGTCTC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	607, 1491
BspFNI	CGCG	4 cut(s)	141, 318, 443, 527
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	1155
BspMAI	CTGCAG	1 cut(s)	1276
BspPI	GGATC	2 cut(s)	227, 1336
BspTNI	GGTCTC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	1521
BsrI	ACTGG	5 cut(s)	103, 243, 273, 682, 793
BssAI	RCCGGY	1 cut(s)	1521
BssECI	CCNNGG	2 cut(s)	11, 1294
BssNI	GRCGYC	1 cut(s)	602
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	1294
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	916
Bst6I	CTCTTC	6 cut(s)	131, 902, 925, 1046, 1272, 1369
BstACI	GRCGYC	1 cut(s)	602
BstC8I	GCNNGC	3 cut(s)	423, 477, 1339
BstDEI	CTNAG	4 cut(s)	594, 1110, 1163, 1499
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	688, 1205
BstFNI	CGCG	4 cut(s)	141, 318, 443, 527
BstHHI	GCGC	2 cut(s)	779, 1122
BstMAI	GTCTC	2 cut(s)	347, 789
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 947
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	1261
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	1272
BstUI	CGCG	4 cut(s)	141, 318, 443, 527
BstV1I	GCAGC	1 cut(s)	1457
BstV2I	GAAGAC	2 cut(s)	597, 1221
Bsu36I	CCTNAGG	1 cut(s)	1499
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	688, 1205
BtsI	GCAGTG	1 cut(s)	1174
BtsIMutI	CAGTG	2 cut(s)	1174, 1269
Cac8I	GCNNGC	3 cut(s)	423, 477, 1339
CaiI	CAGNNNCTG	1 cut(s)	725
CciI	TCATGA	1 cut(s)	634
CfoI	GCGC	2 cut(s)	779, 1122
Cfr10I	RCCGGY	1 cut(s)	1521
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	2 cut(s)	382, 591
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	6 cut(s)	359, 558, 635, 1177, 1211, 1258
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	4 cut(s)	594, 1110, 1163, 1499
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	6 cut(s)	131, 902, 925, 1046, 1272, 1369
EarI	CTCTTC	6 cut(s)	131, 902, 925, 1046, 1272, 1369
EciI	GGCGGA	1 cut(s)	1356
Eco130I	CCWWGG	1 cut(s)	1294
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	1499
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	1294
ErhI	CCWWGG	1 cut(s)	1294
FaeI	CATG	6 cut(s)	362, 561, 638, 1180, 1214, 1261
FaqI	GGGAC	1 cut(s)	1517
FatI	CATG	6 cut(s)	358, 557, 634, 1176, 1210, 1257
FauI	CCCGC	2 cut(s)	18, 520
FbaI	TGATCA	1 cut(s)	1171
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	5, 1471
FokI	GGATG	2 cut(s)	695, 1212
Fsp4HI	GCNGC	2 cut(s)	5, 1471
FspBI	CTAG	1 cut(s)	1467
FspI	TGCGCA	1 cut(s)	1121
GlaI	GCGC	2 cut(s)	778, 1121
GluI	GCNGC	2 cut(s)	5, 1471
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	1172
HapII	CCGG	2 cut(s)	1145, 1522
HgaI	GACGC	2 cut(s)	382, 591
HhaI	GCGC	2 cut(s)	779, 1122
Hin1I	GRCGYC	1 cut(s)	602
Hin1II	CATG	6 cut(s)	362, 561, 638, 1180, 1214, 1261
Hin6I	GCGC	2 cut(s)	777, 1120
HinP1I	GCGC	2 cut(s)	777, 1120
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	5 cut(s)	367, 716, 722, 739, 752
HpaII	CCGG	2 cut(s)	1145, 1522
Hpy166II	GTNNAC	5 cut(s)	31, 83, 121, 236, 278
Hpy188I	TCNGA	9 cut(s)	108, 219, 597, 624, 721, 744, 1315, 1433, 1440
Hpy188III	TCNNGA	8 cut(s)	94, 133, 256, 289, 518, 635, 1096, 1534
Hpy8I	GTNNAC	5 cut(s)	31, 83, 121, 236, 278
Hpy99I	CGWCG	5 cut(s)	53, 122, 163, 199, 398
HpyAV	CCTTC	7 cut(s)	302, 646, 757, 829, 1319, 1363, 1373
HpyCH4III	ACNGT	1 cut(s)	916
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	5 cut(s)	268, 583, 824, 941, 1274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 947
HpyF3I	CTNAG	4 cut(s)	594, 1110, 1163, 1499
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	602
Hsp92II	CATG	6 cut(s)	362, 561, 638, 1180, 1214, 1261
HspAI	GCGC	2 cut(s)	777, 1120
Ksp22I	TGATCA	1 cut(s)	1171
LmnI	GCTCC	2 cut(s)	1147, 1153
Lsp1109I	GCAGC	1 cut(s)	1457
LweI	GCATC	3 cut(s)	12, 694, 1443
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	1 cut(s)	1467
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	487
MbiI	CCGCTC	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	716, 761
MmeI	TCCRAC	2 cut(s)	131, 1418
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	1 cut(s)	1080
MslI	CAYNNNNRTG	3 cut(s)	639, 1224, 1262
MspI	CCGG	2 cut(s)	1145, 1522
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	4 cut(s)	141, 318, 443, 527
MwoI	GCNNNNNNNGC	2 cut(s)	599, 947
NlaIII	CATG	6 cut(s)	362, 561, 638, 1180, 1214, 1261
NlaIV	GGNNCC	1 cut(s)	1155
NmuCI	GTSAC	1 cut(s)	487
NsbI	TGCGCA	1 cut(s)	1121
NspI	RCATGY	1 cut(s)	1261
PagI	TCATGA	1 cut(s)	634
PciI	ACATGT	1 cut(s)	1257
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	367, 716, 739
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	6, 1472
Ple19I	CGATCG	1 cut(s)	217
PleI	GAGTC	2 cut(s)	716, 760
PpsI	GAGTC	2 cut(s)	716, 760
PscI	ACATGT	1 cut(s)	1257
PsiI	TTATAA	1 cut(s)	993
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	1155
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	1276
PstNI	CAGNNNCTG	1 cut(s)	725
PsyI	GACNNNGTC	1 cut(s)	206
PvuI	CGATCG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	3 cut(s)	639, 1224, 1262
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	1080
SatI	GCNGC	2 cut(s)	5, 1471
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	716, 761
ScrFI	CCNGG	1 cut(s)	206
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	3 cut(s)	12, 694, 1443
SfcI	CTRYAG	1 cut(s)	1272
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	3 cut(s)	639, 1224, 1262
SmlI	CTYRAG	1 cut(s)	1540
SmoI	CTYRAG	1 cut(s)	1540
SspMI	CTAG	1 cut(s)	1467
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	1294
TaaI	ACNGT	1 cut(s)	916
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	120, 161, 563
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	367, 716, 739
Tru1I	TTAA	1 cut(s)	1080
Tru9I	TTAA	1 cut(s)	1080
TscAI	CASTG	2 cut(s)	1174, 1269
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	1470
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	5 cut(s)	597, 623, 798, 1155, 1227
TspRI	CASTG	2 cut(s)	1174, 1269
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	6 cut(s)	36, 292, 1034, 1069, 1100, 1384
XceI	RCATGY	1 cut(s)	1261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1301
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.