RLG00000020172

Ethylene-responsive nuclear protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002810
Physical Location & Seq
Forward (+)
61975891 .. 61976616
726 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020172

Sequence Viewer

Length: 726 bp
ATGGCCGGCGAACATGATCATGGTGTTTCGGAAAACACTGATTCTCGGATTTCGGATGCGGAAAGTTCTGTTGAGAAATCGGCCAGTGGCAGCTGTAGATATTTGACTTCCGTTATTGTGGCGGTGGCGAAAGTGTTTGCGGTGGTGGTTTTGGCTATGTGCACCACCAAGCTCGCCGTTGGGATCACATTGTCAGCTTTTCTGCTTCTGCTTTTGTTTATGGAAGGTAATCACTTTTCTTGTTTAATGAAAACTTGCTCGAATGCGAAATCGGCTTTGCAATATATGGCTAAAAGGATCGGCTATGCAATATTGGTTTTGAGGAGTGATGTGGTTGTGAAAGAAAAGAGTGATGGTGTTGTGTTTGAATTGGTTGAACCTGGGGTTGAATCAGACTCTTCAATTGAAGAGATTGAGGTTGTGGAGGTTAAGAGTAGTGGTAGTGTGTGTATTGATGAAGGTAATAGTCATATGAGCTTGATTGAGTATTTGGTTGTGGATGATGAGAAGTGGAAGAAGATTGAGGCGGGTGATCATACTGATGACTTGTCGGTTTCGGTTGGTAAGAAGAGTAAGGGTAGAAAGAAGTCTGTGCCTGAGATGGGAGCAAAGTTTATCAAAAAGTTTGTGCCTAAGAAATTGCGTAAGAAGAGTAAGAAGCATCAGTATGGGACGGAGCCGGAGCCAGAGCCAAAGCCAAGTACTGTAGTGAACTTTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.28

Weight (kDa)

7.01

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 59, 122, 140, 527
AclWI GGATC 2 cut(s) 191, 305
AcoI YGGCCR 2 cut(s) 3, 81
AfaI GTAC 1 cut(s) 703
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 5 cut(s) 368, 377, 389, 402, 407
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 4 cut(s) 93, 172, 197, 477
AluI AGCT 4 cut(s) 93, 172, 197, 477
Alw21I GWGCWC 1 cut(s) 164
Alw44I GTGCAC 1 cut(s) 160
AlwI GGATC 2 cut(s) 191, 305
AoxI GGCC 2 cut(s) 3, 81
ApaLI GTGCAC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 102
BccI CCATC 2 cut(s) 347, 595
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 2 cut(s) 16, 532
BfmI CTRYAG 2 cut(s) 94, 705
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 1 cut(s) 381
BmiI GGNNCC 2 cut(s) 678, 684
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 2 cut(s) 46, 670
BsaJI CCNNGG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 2 cut(s) 61, 505
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 2 cut(s) 5, 83
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 2 cut(s) 6, 680
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 685
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 2 cut(s) 5, 83
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 16, 183, 297, 532
BspACI CCGC 4 cut(s) 59, 122, 140, 527
BspANI GGCC 2 cut(s) 5, 83
BspCNI CTCAG 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 678, 684
BspPI GGATC 2 cut(s) 191, 305
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 4 cut(s) 16, 183, 297, 532
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 706
Bst6I CTCTTC 4 cut(s) 402, 403, 563, 644
BstC8I GCNNGC 2 cut(s) 7, 174
BstDEI CTNAG 2 cut(s) 597, 633
BstF5I GGATG 2 cut(s) 61, 505
BstKTI GATC 4 cut(s) 19, 186, 300, 535
BstMBI GATC 4 cut(s) 16, 183, 297, 532
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 2 cut(s) 94, 705
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 2 cut(s) 5, 83
BtsCI GGATG 2 cut(s) 61, 505
BtsIMutI CAGTG 2 cut(s) 36, 91
Cac8I GCNNGC 2 cut(s) 7, 174
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 1 cut(s) 702
CviAII CATG 2 cut(s) 14, 20
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 2 cut(s) 597, 633
DpnI GATC 4 cut(s) 18, 185, 299, 534
DpnII GATC 4 cut(s) 16, 183, 297, 532
EaeI YGGCCR 2 cut(s) 3, 81
Eam1104I CTCTTC 4 cut(s) 402, 403, 563, 644
EarI CTCTTC 4 cut(s) 402, 403, 563, 644
EcoRII CCWGG 1 cut(s) 379
FaeI CATG 2 cut(s) 17, 23
FaqI GGGAC 1 cut(s) 685
FatI CATG 2 cut(s) 13, 19
FauI CCCGC 1 cut(s) 520
FauNDI CATATG 1 cut(s) 471
FbaI TGATCA 2 cut(s) 16, 532
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 2 cut(s) 68, 512
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HaeIII GGCC 2 cut(s) 5, 83
HapII CCGG 2 cut(s) 6, 680
Hin1II CATG 2 cut(s) 17, 23
HinfI GANTC 3 cut(s) 41, 389, 395
HpaII CCGG 2 cut(s) 6, 680
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 2 cut(s) 162, 712
Hpy188I TCNGA 4 cut(s) 31, 48, 55, 394
Hpy8I GTNNAC 2 cut(s) 162, 712
HpyAV CCTTC 2 cut(s) 218, 452
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4V TGCA 3 cut(s) 162, 280, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 2 cut(s) 597, 633
Hsp92II CATG 2 cut(s) 17, 23
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Ksp22I TGATCA 2 cut(s) 16, 532
Kzo9I GATC 4 cut(s) 16, 183, 297, 532
LmnI GCTCC 3 cut(s) 605, 676, 682
LpnPI CCDG 7 cut(s) 19, 97, 366, 393, 609, 693, 699
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 2 cut(s) 46, 670
MalI GATC 4 cut(s) 18, 185, 299, 534
MboI GATC 4 cut(s) 16, 183, 297, 532
MboII GAAGA 6 cut(s) 390, 419, 526, 529, 580, 661
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 4 cut(s) 368, 402, 638, 721
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 4 cut(s) 315, 409, 418, 517
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 2 cut(s) 245, 429
MslI CAYNNNNRTG 3 cut(s) 18, 540, 666
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 2 cut(s) 6, 680
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 402
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 272
NaeI GCCGGC 1 cut(s) 7
NdeI CATATG 1 cut(s) 471
NdeII GATC 4 cut(s) 16, 183, 297, 532
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 17, 23
NlaIV GGNNCC 2 cut(s) 678, 684
PctI GAATGC 1 cut(s) 268
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 2 cut(s) 41, 389
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 2 cut(s) 678, 684
PvuII CAGCTG 1 cut(s) 93
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
RseI CAYNNNNRTG 3 cut(s) 18, 540, 666
SaqAI TTAA 2 cut(s) 245, 429
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 4 cut(s) 16, 183, 297, 532
ScaI AGTACT 1 cut(s) 703
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 164
SetI ASST 9 cut(s) 95, 174, 199, 229, 382, 420, 429, 463, 479
SfaNI GCATC 2 cut(s) 46, 670
SfcI CTRYAG 2 cut(s) 94, 705
SmiMI CAYNNNNRTG 3 cut(s) 18, 540, 666
Sse9I AATT 4 cut(s) 368, 402, 638, 721
SsiI CCGC 4 cut(s) 59, 122, 140, 527
SspI AATATT 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 706
TaqI TCGA 1 cut(s) 260
TasI AATT 4 cut(s) 368, 402, 638, 721
TatI WGTACW 1 cut(s) 701
TfiI GAWTC 2 cut(s) 41, 389
Tru1I TTAA 2 cut(s) 245, 429
Tru9I TTAA 2 cut(s) 245, 429
TscAI CASTG 2 cut(s) 43, 91
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 263, 471
TspGWI ACGGA 2 cut(s) 100, 689
TspRI CASTG 2 cut(s) 43, 91
VneI GTGCAC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.