Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

27598862 .. 27600496

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGAATTTCATTCCCGGAAAAGATGATCATGGTGTTTCGGAAGAAACTGATTCTCCGATTTCGGGTGAAAGCGATGCGGAAAGTTGTGTTGAGGAATCGGCCGGTGGCAGCTGGGGAGACTTGTCGTCGGTTATTGTGGCGGAGGCAAAGGTTTACGCGTTGGTGGTTCTGGCTTTGTGCACCACCATCCCTCCCGTTGGGATCACACACTCAGCTTTTCTGTTTTTGTTTCCGGAATTTGTGGATAAGCACTGTTCTTATTTAATGAAAATTTGCTCGAATGTGAAATCGGCTTTGCAATATATGGCTAGAAGGATCGGCTATGCAATATTGGTTTTGACGAGTGATGTGATTGTGAAAGAAAAGAGTGACGGTGTTGTGTTTGAATTGGTTGGACCTGCGGTTGAATCAGAATATGAATCAGACTCGGACTCGGACGTGGACTCGGACTCTTCAATTGAAGAGATTGAGGTTGTGCAGGTTAAGAGTACGGCTAGGGTGTGTTTTGATGAAGGTCATAGTCAGAAGACTAGTTTGATTGAGTATTTGGTTGTGGATGATGAGAAGTGGAAGAAGATTGATGCGGGTGATCATACAGATGACTTGTCAGTTTCGGTTAAGAAGAGTAAGATAACGAGAATTCGAAGGAAGTTTGTGCCTAAGATGGGAGCAGAATTAATCAAGAAGATTGTGCCTAAGAAATTGCGTAAGAAGAGTAAGAAGCATCCATCTGGGACGGAGTCGGAGCCAAACCCATCAAGTTTGCATAGATGGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

28.78

Weight (kDa)

5.2

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	409, 472
AccII	CGCG	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	4 cut(s)	80, 143, 404, 587
AclWI	GGATC	2 cut(s)	212, 326
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	4 cut(s)	7, 239, 273, 642
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	65, 200, 668
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	389, 410, 459, 464
AhdI	GACNNNNNGTC	1 cut(s)	127
AhlI	ACTAGT	1 cut(s)	533
AjiI	CACGTC	1 cut(s)	442
AluBI	AGCT	2 cut(s)	114, 218
AluI	AGCT	2 cut(s)	114, 218
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	114
Alw44I	GTGCAC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	212, 326
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	4 cut(s)	7, 239, 273, 642
AseI	ATTAAT	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	80, 602
AsuII	TTCGAA	1 cut(s)	646
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	5 cut(s)	197, 661, 739, 766, 768
BceAI	ACGGC	1 cut(s)	510
BclI	TGATCA	2 cut(s)	28, 592
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	3 cut(s)	312, 498, 534
BfuAI	ACCTGC	2 cut(s)	409, 472
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	398
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	750
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	3 cut(s)	67, 574, 736
BpiI	GAAGAC	1 cut(s)	536
Bpu14I	TTCGAA	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 178, 208
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 200, 668
Bse118I	RCCGGY	1 cut(s)	104
BseAI	TCCGGA	1 cut(s)	235
BseGI	GGATG	3 cut(s)	189, 565, 727
BseLI	CCNNNNNNNGG	3 cut(s)	65, 200, 668
BseMII	CTCAG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	185
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	3 cut(s)	18, 105, 236
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	3 cut(s)	65, 200, 668
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	751
BsnI	GGCC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	28, 204, 318, 592
BspACI	CCGC	4 cut(s)	80, 143, 404, 587
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	227
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	750
BspMI	ACCTGC	2 cut(s)	409, 472
BspPI	GGATC	2 cut(s)	212, 326
BspT104I	TTCGAA	1 cut(s)	646
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	4 cut(s)	28, 204, 318, 592
Bst4CI	ACNGT	2 cut(s)	257, 377
Bst6I	CTCTTC	4 cut(s)	459, 460, 620, 710
BstBI	TTCGAA	1 cut(s)	646
BstDEI	CTNAG	3 cut(s)	214, 663, 699
BstF5I	GGATG	3 cut(s)	189, 565, 727
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	4 cut(s)	31, 207, 321, 595
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	28, 204, 318, 592
BstMCI	CGRYCG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	536
BstZI	CGGCCG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	104
BtgZI	GCGATG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	189, 565, 727
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	2 cut(s)	409, 472
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	104, 114, 176, 218, 296, 311, 324, 497, 751
CviKI_1	RGCY	9 cut(s)	104, 114, 176, 218, 296, 311, 324, 497, 751
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	3 cut(s)	214, 663, 699
DpnI	GATC	4 cut(s)	30, 206, 320, 594
DpnII	GATC	4 cut(s)	28, 204, 318, 592
DriI	GACNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	4 cut(s)	459, 460, 620, 710
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	4 cut(s)	459, 460, 620, 710
EciI	GGCGGA	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	398
Eco52I	CGGCCG	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	642
FaeI	CATG	1 cut(s)	35
FaiI	YATR	8 cut(s)	33, 306, 308, 327, 420, 522, 597, 771
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	1 cut(s)	31
FauI	CCCGC	1 cut(s)	580
FbaI	TGATCA	2 cut(s)	28, 592
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	3 cut(s)	176, 572, 714
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	3 cut(s)	312, 498, 534
GluI	GCNGC	1 cut(s)	112
GsaI	CCCAGC	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	3 cut(s)	18, 105, 236
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	9 cut(s)	53, 98, 410, 422, 428, 434, 446, 452, 743
HpaII	CCGG	3 cut(s)	18, 105, 236
HphI	GGTGA	2 cut(s)	80, 602
Hpy166II	GTNNAC	3 cut(s)	157, 183, 445
Hpy188I	TCNGA	9 cut(s)	43, 60, 415, 427, 433, 439, 451, 528, 748
Hpy188III	TCNNGA	2 cut(s)	236, 685
Hpy8I	GTNNAC	3 cut(s)	157, 183, 445
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	309, 509, 642
HpyCH4III	ACNGT	2 cut(s)	257, 377
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	5 cut(s)	183, 301, 329, 481, 769
HpyF3I	CTNAG	3 cut(s)	214, 663, 699
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	2 cut(s)	28, 592
Kzo9I	GATC	4 cut(s)	28, 204, 318, 592
LmnI	GCTCC	2 cut(s)	671, 748
LpnPI	CCDG	8 cut(s)	31, 100, 118, 158, 249, 414, 467, 720
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	3 cut(s)	67, 574, 736
MaeI	CTAG	3 cut(s)	312, 498, 534
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	30, 206, 320, 594
MboI	GATC	4 cut(s)	28, 204, 318, 592
MboII	GAAGA	9 cut(s)	56, 447, 476, 541, 586, 589, 637, 700, 727
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	8 cut(s)	7, 239, 273, 389, 459, 642, 677, 704
MluI	ACGCGT	1 cut(s)	159
MlyI	GAGTC	5 cut(s)	422, 428, 440, 446, 752
MmeI	TCCRAC	2 cut(s)	376, 726
MnlI	CCTC	4 cut(s)	88, 139, 204, 466
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	4 cut(s)	266, 486, 621, 680
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	3 cut(s)	18, 105, 236
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	161
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	28, 204, 318, 592
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	750
NmuCI	GTSAC	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	646
PfeI	GAWTC	4 cut(s)	53, 98, 410, 422
PflFI	GACNNNGTC	1 cut(s)	742
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	5 cut(s)	422, 428, 440, 446, 751
PpsI	GAGTC	5 cut(s)	422, 428, 440, 446, 751
PshBI	ATTAAT	1 cut(s)	680
PspFI	CCCAGC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	742
PvuII	CAGCTG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	266, 486, 621, 680
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	4 cut(s)	28, 204, 318, 592
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	5 cut(s)	422, 428, 440, 446, 752
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	8 cut(s)	116, 156, 220, 403, 444, 477, 486, 520
SfaNI	GCATC	3 cut(s)	67, 574, 736
SfuI	TTCGAA	1 cut(s)	646
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	600
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	8 cut(s)	7, 239, 273, 389, 459, 642, 677, 704
SsiI	CCGC	4 cut(s)	80, 143, 404, 587
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	3 cut(s)	312, 498, 534
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	257, 377
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	2 cut(s)	281, 646
TasI	AATT	8 cut(s)	7, 239, 273, 389, 459, 642, 677, 704
TfiI	GAWTC	4 cut(s)	53, 98, 410, 422
Tru1I	TTAA	4 cut(s)	266, 486, 621, 680
Tru9I	TTAA	4 cut(s)	266, 486, 621, 680
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	3 cut(s)	284, 435, 528
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	1 cut(s)	260
Tth111I	GACNNNGTC	1 cut(s)	742
VneI	GTGCAC	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	398
VspI	ATTAAT	1 cut(s)	680
XapI	RAATTY	4 cut(s)	7, 239, 273, 642
XspI	CTAG	3 cut(s)	312, 498, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.