Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

17864376 .. 17865756

Gene Structure 1381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTCTTCTCTACCATGGAAAAAACCAAAATCGAGTCGAATCTTAAGATTCATTTCTGAGTTTCAACAATCACCGTTCGTTGAAACTGGCTTTCCAACTTCTCTGATCGATCTCTTCTTCAAGAATCGCGATCGTCTAAAAAAATCTCCATCTAAACGCTTCCAACGAATCGAACGCCAGATTCGAACCGCTCCAAACGCTTCTTCGTTGAGTAATCAAGATACGATTTTTGAAAAGCCCTCGAGGATTAAAACCGTTCGAAGTAAGGTCGAGAAAGTTAATTGCGTTAAAGGTAAATCAGCGGCGTTGAAGAAGAACGCGATTAAAAATAGCGTTTTCGGCGGTAGCGGTGAGGTCGTTTTGATGGCGTTTAAGGTTTTGATAGTAGCGTTGCTCGCCTTGAGCACGAAGAAGAAGCTCACTTTAGGAATCACTCTCTCTGCCTTCGCTCTTCTCTTAACAGAGCTCGTGGCGGCGCGTGTTTTCACGCGCTCTAATAACACCGACAAAGACAAAAACGCGATTGCCCGCGAGAAAATCGAAACTTTTGATGAAACTCGAGTTCCCAAAGCGATTCCATGTCCTGAGGAAACAGAGCATGTAGTATCTGAAACAGAGGTTTCGAAGTTGAAAGGTTTAACGATACGTGATCTGTTGTCAAAGGACGAGAAATCAACAAGTAAAAGTTGGAGACTAAAATCGAAGATTGTGAAGAAGTTGAGGAGTTACAATAAGAAGGATAAGAAGACGATGAAGATCAAAGAAGAGTCTTTGATTGAAGTCTCGAGTTTGGTTTTAGAAGATAAACCAAAGAAAATTGAGTCTGAGAGAGACGAAGAAGAAACGTTGAATCCTCCAGTGGTTGGATCAAACCTGAATGGGATTGTTCTGATCGTGATTGTGCTAACCGGTTTGTTATGTGGGAAGGTCTTAGCTATTGTTCTGACACTATCATGTTTGGTTCTTAGATTAGGAGCAGTCAAAAAAGTTAATCTTTGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.34

Weight (kDa)

9.97

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	191
AccII	CGCG	6 cut(s)	129, 320, 478, 490, 521, 531
AciI	CCGC	6 cut(s)	189, 302, 342, 348, 473, 529
AclI	AACGTT	1 cut(s)	845
AclWI	GGATC	1 cut(s)	874
AfiI	CCNNNNNNNGG	1 cut(s)	863
AflII	CTTAAG	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	908
AgsI	TTSAA	8 cut(s)	65, 83, 121, 233, 310, 631, 779, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	3 cut(s)	418, 466, 935
AluI	AGCT	3 cut(s)	418, 466, 935
Alw21I	GWGCWC	2 cut(s)	407, 468
Alw26I	GTCTC	3 cut(s)	685, 787, 825
AlwI	GGATC	1 cut(s)	874
Ama87I	CYCGRG	3 cut(s)	241, 558, 784
AsiGI	ACCGGT	1 cut(s)	908
AspLEI	GCGC	2 cut(s)	478, 492
AsuHPI	GGTGA	2 cut(s)	63, 362
AsuII	TTCGAA	3 cut(s)	184, 259, 623
AvaI	CYCGRG	3 cut(s)	241, 558, 784
AxyI	CCTNAGG	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	2 cut(s)	407, 468
BccI	CCATC	2 cut(s)	157, 358
BcoDI	GTCTC	3 cut(s)	685, 787, 825
BfrI	CTTAAG	1 cut(s)	43
BisI	GCNGC	2 cut(s)	303, 474
BlsI	GCNGC	2 cut(s)	304, 475
BmeT110I	CYCGRG	3 cut(s)	241, 558, 784
BpiI	GAAGAC	1 cut(s)	752
BpmI	CTGGAG	1 cut(s)	840
Bpu14I	TTCGAA	3 cut(s)	184, 259, 623
BpuEI	CTTGAG	1 cut(s)	421
Bsa29I	ATCGAT	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	755
BsaJI	CCNNGG	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse118I	RCCGGY	1 cut(s)	908
Bse1I	ACTGG	2 cut(s)	91, 857
Bse21I	CCTNAGG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	755
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	14
BseJI	GATNNNNATC	1 cut(s)	755
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMII	CTCAG	3 cut(s)	48, 576, 816
BseNI	ACTGG	2 cut(s)	91, 857
BseRI	GAGGAG	1 cut(s)	736
Bsh1236I	CGCG	6 cut(s)	129, 320, 478, 490, 521, 531
Bsh1285I	CGRYCG	1 cut(s)	133
BshTI	ACCGGT	1 cut(s)	908
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	407, 468
BsiHKCI	CYCGRG	3 cut(s)	241, 558, 784
BsiSI	CCGG	1 cut(s)	909
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	3 cut(s)	685, 787, 825
BsmBI	CGTCTC	1 cut(s)	825
BsoBI	CYCGRG	3 cut(s)	241, 558, 784
Bsp119I	TTCGAA	3 cut(s)	184, 259, 623
Bsp1286I	GDGCHC	2 cut(s)	407, 468
Bsp143I	GATC	7 cut(s)	105, 109, 130, 649, 756, 866, 891
Bsp19I	CCATGG	1 cut(s)	14
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	6 cut(s)	189, 302, 342, 348, 473, 529
BspCNI	CTCAG	3 cut(s)	49, 577, 817
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	6 cut(s)	129, 320, 478, 490, 521, 531
BspPI	GGATC	1 cut(s)	874
BspQI	GCTCTTC	1 cut(s)	456
BspT104I	TTCGAA	3 cut(s)	184, 259, 623
BspTI	CTTAAG	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	908
BsrI	ACTGG	2 cut(s)	91, 857
BssAI	RCCGGY	1 cut(s)	908
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	7 cut(s)	105, 109, 130, 649, 756, 866, 891
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	75, 256
Bst6I	CTCTTC	3 cut(s)	119, 456, 759
BstAFI	CTTAAG	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	647
BstBI	TTCGAA	3 cut(s)	184, 259, 623
BstC8I	GCNNGC	2 cut(s)	396, 529
BstDEI	CTNAG	5 cut(s)	57, 585, 825, 931, 965
BstDSI	CCRYGG	1 cut(s)	14
BstFNI	CGCG	6 cut(s)	129, 320, 478, 490, 521, 531
BstHHI	GCGC	2 cut(s)	478, 492
BstKTI	GATC	7 cut(s)	108, 112, 133, 652, 759, 869, 894
BstMAI	GTCTC	3 cut(s)	685, 787, 825
BstMBI	GATC	7 cut(s)	105, 109, 130, 649, 756, 866, 891
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 339, 395
BstNSI	RCATGY	1 cut(s)	602
BstUI	CGCG	6 cut(s)	129, 320, 478, 490, 521, 531
BstV2I	GAAGAC	1 cut(s)	752
Bsu15I	ATCGAT	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	585
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	864
BtuMI	TCGCGA	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	396, 529
CfoI	GCGC	2 cut(s)	478, 492
Cfr10I	RCCGGY	1 cut(s)	908
ClaI	ATCGAT	1 cut(s)	108
CspAI	ACCGGT	1 cut(s)	908
CviAII	CATG	4 cut(s)	15, 579, 599, 954
CviJI	RGCY	5 cut(s)	90, 238, 418, 466, 935
CviKI_1	RGCY	5 cut(s)	90, 238, 418, 466, 935
DdeI	CTNAG	5 cut(s)	57, 585, 825, 931, 965
DpnI	GATC	7 cut(s)	107, 111, 132, 651, 758, 868, 893
DpnII	GATC	7 cut(s)	105, 109, 130, 649, 756, 866, 891
Eam1104I	CTCTTC	3 cut(s)	119, 456, 759
EarI	CTCTTC	3 cut(s)	119, 456, 759
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	466
Eco81I	CCTNAGG	1 cut(s)	585
Eco88I	CYCGRG	3 cut(s)	241, 558, 784
EcoICRI	GAGCTC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	825
FaeI	CATG	4 cut(s)	18, 582, 602, 957
FaiI	YATR	7 cut(s)	16, 580, 600, 919, 955, 1001, 1003
FalI	AAGNNNNNCTT	1 cut(s)	978
FatI	CATG	4 cut(s)	14, 578, 598, 953
FauI	CCCGC	1 cut(s)	536
Fnu4HI	GCNGC	2 cut(s)	303, 474
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	303, 474
GlaI	GCGC	2 cut(s)	477, 491
GluI	GCNGC	2 cut(s)	303, 474
GsuI	CTGGAG	1 cut(s)	840
HapII	CCGG	1 cut(s)	909
HhaI	GCGC	2 cut(s)	478, 492
Hin1II	CATG	4 cut(s)	18, 582, 602, 957
Hin6I	GCGC	2 cut(s)	476, 490
HinP1I	GCGC	2 cut(s)	476, 490
HpaII	CCGG	1 cut(s)	909
HphI	GGTGA	2 cut(s)	63, 362
Hpy188I	TCNGA	6 cut(s)	58, 105, 610, 826, 891, 945
Hpy188III	TCNNGA	7 cut(s)	121, 128, 218, 271, 584, 784, 895
HpyAV	CCTTC	3 cut(s)	454, 730, 919
HpyCH4III	ACNGT	2 cut(s)	75, 256
HpyCH4IV	ACGT	2 cut(s)	646, 845
HpyCH4V	TGCA	1 cut(s)	999
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 339, 395
HpyF3I	CTNAG	5 cut(s)	57, 585, 825, 931, 965
HpySE526I	ACGT	2 cut(s)	646, 845
Hsp92II	CATG	4 cut(s)	18, 582, 602, 957
HspAI	GCGC	2 cut(s)	476, 490
Kzo9I	GATC	7 cut(s)	105, 109, 130, 649, 756, 866, 891
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	196, 974
LpnPI	CCDG	6 cut(s)	72, 191, 597, 870, 887, 922
MaeII	ACGT	2 cut(s)	646, 845
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	7 cut(s)	107, 111, 132, 651, 758, 868, 893
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	7 cut(s)	105, 109, 130, 649, 756, 866, 891
MhlI	GDGCHC	2 cut(s)	407, 468
MluCI	AATT	2 cut(s)	280, 816
MlyI	GAGTC	3 cut(s)	43, 776, 830
MmeI	TCCRAC	4 cut(s)	119, 187, 668, 844
MnlI	CCTC	7 cut(s)	237, 250, 346, 580, 610, 714, 864
MseI	TTAA	9 cut(s)	44, 249, 279, 288, 324, 372, 458, 638, 990
MslI	CAYNNNNRTG	1 cut(s)	952
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	1 cut(s)	909
MvnI	CGCG	6 cut(s)	129, 320, 478, 490, 521, 531
MwoI	GCNNNNNNNGC	3 cut(s)	197, 339, 395
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	7 cut(s)	105, 109, 130, 649, 756, 866, 891
NlaIII	CATG	4 cut(s)	18, 582, 602, 957
NruI	TCGCGA	1 cut(s)	129
NspI	RCATGY	1 cut(s)	602
NspV	TTCGAA	3 cut(s)	184, 259, 623
PaeR7I	CTCGAG	3 cut(s)	241, 558, 784
PciSI	GCTCTTC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	2 cut(s)	163, 181
PfeI	GAWTC	8 cut(s)	39, 48, 124, 168, 181, 429, 574, 850
PflMI	CCANNNNNTGG	1 cut(s)	863
PinAI	ACCGGT	1 cut(s)	908
PkrI	GCNGC	2 cut(s)	304, 475
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	3 cut(s)	42, 775, 829
PpsI	GAGTC	3 cut(s)	42, 775, 829
Ppu21I	YACGTR	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	468
Psp1406I	AACGTT	1 cut(s)	845
PspXI	VCTCGAGB	2 cut(s)	241, 558
PvuI	CGATCG	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	952
SacI	GAGCTC	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	9 cut(s)	44, 249, 279, 288, 324, 372, 458, 638, 990
SatI	GCNGC	2 cut(s)	303, 474
Sau3AI	GATC	7 cut(s)	105, 109, 130, 649, 756, 866, 891
SchI	GAGTC	3 cut(s)	43, 776, 830
SduI	GDGCHC	2 cut(s)	407, 468
Sfr274I	CTCGAG	3 cut(s)	241, 558, 784
SfuI	TTCGAA	3 cut(s)	184, 259, 623
SlaI	CTCGAG	3 cut(s)	241, 558, 784
SmiMI	CAYNNNNRTG	1 cut(s)	952
SmlI	CTYRAG	5 cut(s)	43, 241, 400, 558, 784
SmoI	CTYRAG	5 cut(s)	43, 241, 400, 558, 784
Sse9I	AATT	2 cut(s)	280, 816
SsiI	CCGC	6 cut(s)	189, 302, 342, 348, 473, 529
SstI	GAGCTC	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	75, 256
TaiI	ACGT	2 cut(s)	649, 848
TasI	AATT	2 cut(s)	280, 816
TauI	GCSGC	2 cut(s)	305, 476
TfiI	GAWTC	8 cut(s)	39, 48, 124, 168, 181, 429, 574, 850
Tru1I	TTAA	9 cut(s)	44, 249, 279, 288, 324, 372, 458, 638, 990
Tru9I	TTAA	9 cut(s)	44, 249, 279, 288, 324, 372, 458, 638, 990
TscAI	CASTG	1 cut(s)	864
TspDTI	ATGAA	3 cut(s)	40, 567, 767
TspRI	CASTG	1 cut(s)	864
Van91I	CCANNNNNTGG	1 cut(s)	863
Vha464I	CTTAAG	1 cut(s)	43
XceI	RCATGY	1 cut(s)	602
XhoI	CTCGAG	3 cut(s)	241, 558, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.