Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Reverse (-)

34097658 .. 34099157

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1248100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGCCGCTTCCGTGGAAGAAGACCAGAGCGACACGGATTTCCCAATTCGTCGCCGATCTCCAATCGCCGAAACGCGGCGGTTCGCTTTTCGTCCAGACCGGGTTTCCCGCCTCTCTCATCGACCTCTTCGTCAAGAACCGGGATCACTTAAAGAAACCGTCGAAAAAGCATAAGAACAAGAGCAAGAAGAAAGGGAATCGGGTTGATGACCGGGTCGACGATCGGATCGCTCCGAATTGTGACCTGGGTTCGAGCGATTTGCCGGTTTTGGTAAAACCCAGTTCGCCAGATTCGTCAAATGTCGAGAATTTGAAGCCCACAGAAGCTGATCATGGCGTTGAGGCTACTGATTTTGAAAATCGTGCGGAGAATTGTGTCGTCGGTGGTGGAGAATGCGTCGGCGGGATTTGGGGGGTGATTCTGATGACGTTGATGAAGATTATTGTGGTGGTGGTTTTGGCTTTGAGCACCAAGAAGCTCGTGGTTGGGATCACATTGTCCGCTTTTCTCCTTCTGCTTCTGGAATACGCGGGTAAGCACTTGGCTTTGTTTTTGAAACCATGTTCGAATGCGAAATCTGTTATGGCTCAGAGATTGTCTGCGTTTTTATTGTTTTCGAATGGTTTCGATTCGAGTGATGATATGAAGGGAGTGGCTGCGAGGGAAAAGACTGTGATTTTAGATTCTGCCATTGAAGAGATTGAGATTGTTGATGTTAACAAGAAGGGAAGATTGATTGAGTTGCTTGGTATGGAATGTGAGGAGACGAAGCCCGCGGAGAAGGGAAGTGTTGGCGTTGATAAAACCGCCGGTGAAAAAAGTTTGGTTGAGTTGCTTGGGATGGAATGTGAGAAGAAGAGGGGGGTGGTGGATAAGAGAAGGGTTTGTGCCAATAAGACTGTCGGTGATGTGTCGTTGGTTAAGTTATTGGGGAAGGATTATCAAAAGATAAAGCTCGTGGAGGATGGCGAAGACGAAGGTGAATTTGTTGGGGATAAGAAGAGTAAGAGTATGAAAAATTCTAAGATTAAAGCTAAACTTATCAAGAAATTCGTGCCTAAGAAGTTGCGTCGAAAGGGTAAGCAAAACGAGCAGGAGCTGGAGCCTGTGCTGTACAGTGGCGATTCTAGTTTCCTCGGAGATGATAAGGTAGAAGGATGTGAAGAACAAGAAGACCGTGAAGATGAGAAACAAGAGGAACAAGAAAGTGAAAACAGATCGGTGTTCTCACTAGATGCAGAGGAGAAGTCTAAAATCCAAGGCTCCGACGGAGTTTCTGATAACGGTGAAGGATCATTGGCTGGCGAAGTAACACCACTGGTTGTTGAAAAGAAGGGAAGAGAAGGAAAAGAAGGTGGTTTTGGGTATCTGGTTCCCTTTCTTATAGTTCTTGCCGGACTTTTTGGAGGTCGGCTTGTTGCCCTTTTTCTTACAATCACTTTCTTTTTTTTGTCGAAGTTGATCGGAACTCTAAGGAGACTGGTAAAAGTATGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

500

Amino Acids

54.71

Weight (kDa)

8.49

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	3 cut(s)	75, 530, 776
AclWI	GGATC	4 cut(s)	150, 233, 497, 1300
AcsI	RAATTY	4 cut(s)	307, 983, 1018, 1049
AfaI	GTAC	1 cut(s)	1115
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	313, 356, 556, 695, 1328
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	1344, 1376
AluBI	AGCT	5 cut(s)	326, 478, 955, 1034, 1099
AluI	AGCT	5 cut(s)	326, 478, 955, 1034, 1099
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	2 cut(s)	758, 1471
AlwI	GGATC	4 cut(s)	150, 233, 497, 1300
AlwNI	CAGNNNCTG	2 cut(s)	326, 1099
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	4 cut(s)	307, 983, 1018, 1049
Asp700I	GAANNNNTTC	1 cut(s)	623
AsuC2I	CCSGG	3 cut(s)	100, 140, 212
AsuHPI	GGTGA	5 cut(s)	427, 824, 917, 992, 1298
AsuII	TTCGAA	2 cut(s)	566, 617
BauI	CACGAG	2 cut(s)	479, 956
BbsI	GAAGAC	3 cut(s)	26, 978, 1179
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	2 cut(s)	835, 959
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	3 cut(s)	100, 140, 212
BcoDI	GTCTC	2 cut(s)	758, 1471
BfaI	CTAG	2 cut(s)	1128, 1232
BisI	GCNGC	3 cut(s)	5, 76, 657
BlsI	GCNGC	3 cut(s)	6, 77, 658
Bme1390I	CCNGG	4 cut(s)	100, 140, 212, 245
BmiI	GGNNCC	3 cut(s)	1104, 1264, 1374
BmrFI	CCNGG	4 cut(s)	100, 140, 212, 245
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	1225
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	3 cut(s)	26, 978, 1179
BpmI	CTGGAG	1 cut(s)	1121
Bpu14I	TTCGAA	2 cut(s)	566, 617
BpuMI	CCSGG	3 cut(s)	100, 140, 212
BsaJI	CCNNGG	5 cut(s)	11, 244, 774, 1135, 1258
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	2 cut(s)	262, 809
Bse1I	ACTGG	3 cut(s)	279, 1323, 1485
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	5 cut(s)	11, 244, 774, 1135, 1258
BseGI	GGATG	3 cut(s)	846, 970, 1163
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	3 cut(s)	279, 1323, 1485
BseRI	GAGGAG	2 cut(s)	776, 1256
BseXI	GCAGC	1 cut(s)	643
Bsh1236I	CGCG	3 cut(s)	75, 530, 776
Bsh1285I	CGRYCG	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	470
BsiSI	CCGG	6 cut(s)	99, 139, 211, 263, 810, 1395
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	758, 1471
BsmBI	CGTCTC	1 cut(s)	758
BsmI	GAATGC	2 cut(s)	398, 574
Bsp119I	TTCGAA	2 cut(s)	566, 617
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp1407I	TGTACA	1 cut(s)	1113
Bsp143I	GATC	9 cut(s)	55, 142, 220, 225, 328, 489, 1217, 1292, 1461
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	3 cut(s)	75, 530, 776
BspLI	GGNNCC	3 cut(s)	1104, 1264, 1374
BspPI	GGATC	4 cut(s)	150, 233, 497, 1300
BspT104I	TTCGAA	2 cut(s)	566, 617
BsrFI	RCCGGY	2 cut(s)	262, 809
BsrGI	TGTACA	1 cut(s)	1113
BsrI	ACTGG	3 cut(s)	279, 1323, 1485
BssAI	RCCGGY	2 cut(s)	262, 809
BssECI	CCNNGG	5 cut(s)	11, 244, 774, 1135, 1258
BssMI	GATC	9 cut(s)	55, 142, 220, 225, 328, 489, 1217, 1292, 1461
BssSI	CACGAG	2 cut(s)	479, 956
BssT1I	CCWWGG	1 cut(s)	1258
Bst2BI	CACGAG	2 cut(s)	479, 956
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	6 cut(s)	159, 673, 901, 1118, 1178, 1286
Bst6I	CTCTTC	5 cut(s)	131, 690, 851, 995, 1333
BstAUI	TGTACA	1 cut(s)	1113
BstBI	TTCGAA	2 cut(s)	566, 617
BstC8I	GCNNGC	2 cut(s)	774, 1303
BstDEI	CTNAG	4 cut(s)	588, 1023, 1059, 1472
BstDSI	CCRYGG	2 cut(s)	11, 774
BstF5I	GGATG	3 cut(s)	846, 970, 1163
BstFNI	CGCG	3 cut(s)	75, 530, 776
BstKTI	GATC	9 cut(s)	58, 145, 223, 228, 331, 492, 1220, 1295, 1464
BstMAI	GTCTC	2 cut(s)	758, 1471
BstMBI	GATC	9 cut(s)	55, 142, 220, 225, 328, 489, 1217, 1292, 1461
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	1090
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	4 cut(s)	98, 138, 210, 243
BstUI	CGCG	3 cut(s)	75, 530, 776
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	3 cut(s)	26, 978, 1179
BtgI	CCRYGG	2 cut(s)	11, 774
BtsCI	GGATG	3 cut(s)	846, 970, 1163
BtsIMutI	CAGTG	2 cut(s)	1123, 1316
Cac8I	GCNNGC	2 cut(s)	774, 1303
CaiI	CAGNNNCTG	2 cut(s)	326, 1099
Cfr10I	RCCGGY	2 cut(s)	262, 809
Cfr42I	CCGCGG	1 cut(s)	777
CseI	GACGC	2 cut(s)	385, 1058
Csp6I	GTAC	1 cut(s)	1114
CviAII	CATG	3 cut(s)	332, 561, 1497
CviQI	GTAC	1 cut(s)	1114
DdeI	CTNAG	4 cut(s)	588, 1023, 1059, 1472
DpnI	GATC	9 cut(s)	57, 144, 222, 227, 330, 491, 1219, 1294, 1463
DpnII	GATC	9 cut(s)	55, 142, 220, 225, 328, 489, 1217, 1292, 1461
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	5 cut(s)	131, 690, 851, 995, 1333
EarI	CTCTTC	5 cut(s)	131, 690, 851, 995, 1333
Eco130I	CCWWGG	1 cut(s)	1258
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	1258
ErhI	CCWWGG	1 cut(s)	1258
Esp3I	CGTCTC	1 cut(s)	758
FaeI	CATG	3 cut(s)	335, 564, 1500
FalI	AAGNNNNNCTT	2 cut(s)	1023, 1055
FatI	CATG	3 cut(s)	331, 560, 1496
FauI	CCCGC	4 cut(s)	115, 395, 523, 781
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	5, 76, 657
FokI	GGATG	3 cut(s)	853, 977, 1170
Fsp4HI	GCNGC	3 cut(s)	5, 76, 657
FspBI	CTAG	2 cut(s)	1128, 1232
GluI	GCNGC	3 cut(s)	5, 76, 657
GsuI	CTGGAG	1 cut(s)	1121
HapII	CCGG	6 cut(s)	99, 139, 211, 263, 810, 1395
HgaI	GACGC	2 cut(s)	385, 1058
Hin1II	CATG	3 cut(s)	335, 564, 1500
HincII	GTYRAC	2 cut(s)	217, 718
HindII	GTYRAC	2 cut(s)	217, 718
HinfI	GANTC	6 cut(s)	196, 290, 418, 629, 683, 1124
HpaI	GTTAAC	1 cut(s)	718
HpaII	CCGG	6 cut(s)	99, 139, 211, 263, 810, 1395
HphI	GGTGA	5 cut(s)	427, 824, 917, 992, 1298
Hpy166II	GTNNAC	2 cut(s)	217, 718
Hpy188I	TCNGA	8 cut(s)	225, 234, 423, 591, 1139, 1267, 1279, 1466
Hpy188III	TCNNGA	5 cut(s)	94, 133, 304, 521, 1045
Hpy8I	GTNNAC	2 cut(s)	217, 718
Hpy99I	CGWCG	7 cut(s)	53, 163, 221, 383, 401, 1074, 1271
HpyCH4III	ACNGT	6 cut(s)	159, 673, 901, 1118, 1178, 1286
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	1 cut(s)	1238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1090
HpyF3I	CTNAG	4 cut(s)	588, 1023, 1059, 1472
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	335, 564, 1500
Ksp22I	TGATCA	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	718
KspI	CCGCGG	1 cut(s)	777
Kzo9I	GATC	9 cut(s)	55, 142, 220, 225, 328, 489, 1217, 1292, 1461
LmnI	GCTCC	4 cut(s)	235, 1096, 1102, 1268
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	1 cut(s)	1225
MaeI	CTAG	2 cut(s)	1128, 1232
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	239, 1309
MalI	GATC	9 cut(s)	57, 144, 222, 227, 330, 491, 1219, 1294, 1463
MboI	GATC	9 cut(s)	55, 142, 220, 225, 328, 489, 1217, 1292, 1461
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	7 cut(s)	44, 235, 307, 370, 983, 1018, 1049
MmeI	TCCRAC	1 cut(s)	1290
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	4 cut(s)	149, 717, 921, 1029
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	6 cut(s)	99, 139, 211, 263, 810, 1395
MspR9I	CCNGG	4 cut(s)	100, 140, 212, 245
Mva1269I	GAATGC	2 cut(s)	398, 574
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	3 cut(s)	75, 530, 776
MwoI	GCNNNNNNNGC	1 cut(s)	1090
NciI	CCSGG	3 cut(s)	100, 140, 212
NdeII	GATC	9 cut(s)	55, 142, 220, 225, 328, 489, 1217, 1292, 1461
NlaIII	CATG	3 cut(s)	335, 564, 1500
NlaIV	GGNNCC	3 cut(s)	1104, 1264, 1374
NmuCI	GTSAC	1 cut(s)	239
NspV	TTCGAA	2 cut(s)	566, 617
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 290
PctI	GAATGC	2 cut(s)	398, 574
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	6 cut(s)	196, 290, 418, 629, 683, 1124
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	6, 77, 658
Ple19I	CGATCG	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	3 cut(s)	1104, 1264, 1374
PstNI	CAGNNNCTG	2 cut(s)	326, 1099
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	1115
RsaNI	GTAC	1 cut(s)	1114
SacII	CCGCGG	1 cut(s)	777
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	149, 717, 921, 1029
SatI	GCNGC	3 cut(s)	5, 76, 657
Sau3AI	GATC	9 cut(s)	55, 142, 220, 225, 328, 489, 1217, 1292, 1461
ScrFI	CCNGG	4 cut(s)	100, 140, 212, 245
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	1 cut(s)	1225
Sfr303I	CCGCGG	1 cut(s)	777
SfuI	TTCGAA	2 cut(s)	566, 617
SgrAI	CRCCGGYG	1 cut(s)	809
SgrBI	CCGCGG	1 cut(s)	777
Sse9I	AATT	7 cut(s)	44, 235, 307, 370, 983, 1018, 1049
SspMI	CTAG	2 cut(s)	1128, 1232
StyD4I	CCNGG	4 cut(s)	98, 138, 210, 243
StyI	CCWWGG	1 cut(s)	1258
TaaI	ACNGT	6 cut(s)	159, 673, 901, 1118, 1178, 1286
TaiI	ACGT	1 cut(s)	431
TasI	AATT	7 cut(s)	44, 235, 307, 370, 983, 1018, 1049
TatI	WGTACW	1 cut(s)	1113
TauI	GCSGC	2 cut(s)	7, 78
TfiI	GAWTC	6 cut(s)	196, 290, 418, 629, 683, 1124
Tru1I	TTAA	4 cut(s)	149, 717, 921, 1029
Tru9I	TTAA	4 cut(s)	149, 717, 921, 1029
TscAI	CASTG	2 cut(s)	1123, 1323
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	449, 659, 1028
TspGWI	ACGGA	2 cut(s)	49, 1284
TspRI	CASTG	2 cut(s)	1123, 1323
Tth111I	GACNNNGTC	1 cut(s)	212
XapI	RAATTY	4 cut(s)	307, 983, 1018, 1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	623
XspI	CTAG	2 cut(s)	1128, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.