Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

60242193 .. 60243709

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCGGCGAAGATGATCATGGTGTTTCGCAAAACACTGATTCTCGGATTTCGGATGCGGAAAGTTCTGTTGAGGAATCGGCCCGTGGCAGCTGTAGATATTTGACTTCGGTTATTGTGGCGGTGGCGAAGGTGTTTGCGGTGGTGGTTTTGGCTATGTGCACCACCAAGCTCGCCGTTGGGATCACATTGTCAGCTTTTCTGCTTCTGCTTTTGTTTATGGAAGGTAAGCACTTTTCTTGTTTAATGAAAACTTGCTCGAATGCGAAATCGGCCTTGCAATATATGGCTAAAAGGATCGGCTTTGCAATATTGGTTTTGAGAAGTGATGTGATTGTGAAAGAAAAGAGTGATGGTGTTGTGTTTGAATTGGCTGAACCTAGGGTTGAATCAGACGTTGAATCAGACTCTTCAATTGAAGAGATTGAGGTTGTGGAGGTTAAGAGTAGTGGTAGTGTGTGTATTGATGAAGGTAATAGTCATATGAGCTTGATTGAGTATTTGGTTGTGGATGATGAGAAGTGGAAGAAGATTGAGGCGGGTGATCATACTGATGACTTGTCGGTTTCGCTTGGTAAGAAGAGTAAGGGTAGAAAGAAGTCTGTGCCTGAGATGGGAGCAAAGTTTATCAAAAAGTTTGTGCCTAAGAAATTGCGTAAGAAGAGTAAGAAGCAACAGTACGGGACGGAGCCGGAGCCAGAGCTAGAGCCAAAGCCAAGTACTGTAGTGAAAGCTGTTGATGCAGTAAAATCCTTGAAAAAGGAAAACAACTATGGGCCCTATGCCGGTAACAAATCCACTAAAGAAACCAGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

29.72

Weight (kDa)

7.58

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	59, 122, 140, 539
AclWI	GGATC	2 cut(s)	191, 305
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	680, 721, 814
AfiI	CCNNNNNNNGG	2 cut(s)	614, 785
AgsI	TTSAA	6 cut(s)	368, 389, 401, 414, 419, 757
AluBI	AGCT	6 cut(s)	93, 172, 197, 489, 703, 734
AluI	AGCT	6 cut(s)	93, 172, 197, 489, 703, 734
Alw21I	GWGCWC	1 cut(s)	164
Alw44I	GTGCAC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	191, 305
AoxI	GGCC	4 cut(s)	3, 81, 273, 776
ApaI	GGGCCC	1 cut(s)	780
ApaLI	GTGCAC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	380
AspS9I	GGNCC	3 cut(s)	82, 776, 777
AsuHPI	GGTGA	1 cut(s)	554
AvrII	CCTAGG	1 cut(s)	380
BaeGI	GKGCMC	2 cut(s)	164, 780
BanII	GRGCYC	1 cut(s)	780
BarI	GAAGNNNNNNTAC	2 cut(s)	662, 694
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	347, 607
BceAI	ACGGC	1 cut(s)	161
BclI	TGATCA	2 cut(s)	16, 544
BfaI	CTAG	2 cut(s)	381, 704
BfmI	CTRYAG	2 cut(s)	94, 723
BisI	GCNGC	1 cut(s)	91
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	92
BmcAI	AGTACT	1 cut(s)	721
BmgT120I	GGNCC	3 cut(s)	82, 776, 777
BmiI	GGNNCC	3 cut(s)	690, 696, 778
BmsI	GCATC	2 cut(s)	46, 730
BsaJI	CCNNGG	2 cut(s)	85, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 785
Bse118I	RCCGGY	2 cut(s)	5, 785
Bse1I	ACTGG	1 cut(s)	810
BseDI	CCNNGG	2 cut(s)	85, 380
BseGI	GGATG	2 cut(s)	61, 517
BseLI	CCNNNNNNNGG	2 cut(s)	614, 785
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	810
BseSI	GKGCMC	2 cut(s)	164, 780
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	4 cut(s)	5, 83, 275, 778
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	3 cut(s)	6, 692, 786
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	2 cut(s)	614, 785
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	5, 83, 275, 778
Bsp120I	GGGCCC	1 cut(s)	776
Bsp1286I	GDGCHC	2 cut(s)	164, 780
Bsp143I	GATC	4 cut(s)	16, 183, 297, 544
BspACI	CCGC	4 cut(s)	59, 122, 140, 539
BspANI	GGCC	4 cut(s)	5, 83, 275, 778
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	3 cut(s)	690, 696, 778
BspPI	GGATC	2 cut(s)	191, 305
BsrFI	RCCGGY	2 cut(s)	5, 785
BsrI	ACTGG	1 cut(s)	810
BssAI	RCCGGY	2 cut(s)	5, 785
BssECI	CCNNGG	2 cut(s)	85, 380
BssMI	GATC	4 cut(s)	16, 183, 297, 544
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	678, 724
Bst6I	CTCTTC	4 cut(s)	414, 415, 575, 656
BstC8I	GCNNGC	2 cut(s)	7, 174
BstDEI	CTNAG	2 cut(s)	609, 645
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	61, 517
BstKTI	GATC	4 cut(s)	19, 186, 300, 547
BstMBI	GATC	4 cut(s)	16, 183, 297, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 740
BstSFI	CTRYAG	2 cut(s)	94, 723
BstSLI	GKGCMC	2 cut(s)	164, 780
BstV1I	GCAGC	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	5, 83, 275, 778
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	61, 517
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	7, 174
Cfr10I	RCCGGY	2 cut(s)	5, 785
Cfr13I	GGNCC	3 cut(s)	82, 776, 777
Csp6I	GTAC	3 cut(s)	679, 720, 813
CviAII	CATG	1 cut(s)	20
CviQI	GTAC	3 cut(s)	679, 720, 813
DdeI	CTNAG	2 cut(s)	609, 645
DpnI	GATC	4 cut(s)	18, 185, 299, 546
DpnII	GATC	4 cut(s)	16, 183, 297, 544
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	414, 415, 575, 656
EarI	CTCTTC	4 cut(s)	414, 415, 575, 656
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	777
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	23
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	532
FauNDI	CATATG	1 cut(s)	483
FbaI	TGATCA	2 cut(s)	16, 544
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	2 cut(s)	68, 524
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	2 cut(s)	381, 704
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	4 cut(s)	5, 83, 275, 778
HapII	CCGG	3 cut(s)	6, 692, 786
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	5 cut(s)	41, 77, 389, 401, 407
HpaII	CCGG	3 cut(s)	6, 692, 786
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	48, 55, 394, 406
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	124, 218, 464
HpyCH4III	ACNGT	2 cut(s)	678, 724
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	162, 280, 308, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 740
HpyF3I	CTNAG	2 cut(s)	609, 645
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	2 cut(s)	16, 544
Kzo9I	GATC	4 cut(s)	16, 183, 297, 544
LmnI	GCTCC	3 cut(s)	617, 688, 694
LpnPI	CCDG	5 cut(s)	19, 621, 705, 711, 799
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	2 cut(s)	46, 730
MaeI	CTAG	2 cut(s)	381, 704
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	788
MalI	GATC	4 cut(s)	18, 185, 299, 546
MboI	GATC	4 cut(s)	16, 183, 297, 544
MboII	GAAGA	7 cut(s)	23, 402, 431, 538, 541, 592, 673
MfeI	CAATTG	1 cut(s)	414
MhlI	GDGCHC	2 cut(s)	164, 780
MluCI	AATT	3 cut(s)	368, 414, 650
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	67, 421, 430, 529
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	2 cut(s)	245, 441
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	3 cut(s)	6, 692, 786
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	272, 740
NaeI	GCCGGC	1 cut(s)	7
NdeI	CATATG	1 cut(s)	483
NdeII	GATC	4 cut(s)	16, 183, 297, 544
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	3 cut(s)	690, 696, 778
PctI	GAATGC	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	4 cut(s)	41, 77, 389, 401
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	690, 696, 778
PspOMI	GGGCCC	1 cut(s)	776
PspPI	GGNCC	3 cut(s)	82, 776, 777
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	3 cut(s)	680, 721, 814
RsaNI	GTAC	3 cut(s)	679, 720, 813
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	245, 441
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	4 cut(s)	16, 183, 297, 544
Sau96I	GGNCC	3 cut(s)	82, 776, 777
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	164, 780
SfaNI	GCATC	2 cut(s)	46, 730
SfcI	CTRYAG	2 cut(s)	94, 723
SmiMI	CAYNNNNRTG	1 cut(s)	552
Sse9I	AATT	3 cut(s)	368, 414, 650
SsiI	CCGC	4 cut(s)	59, 122, 140, 539
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	2 cut(s)	381, 704
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	2 cut(s)	678, 724
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	368, 414, 650
TatI	WGTACW	2 cut(s)	719, 812
TfiI	GAWTC	4 cut(s)	41, 77, 389, 401
Tru1I	TTAA	2 cut(s)	245, 441
Tru9I	TTAA	2 cut(s)	245, 441
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	2 cut(s)	263, 483
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	160
XmaJI	CCTAGG	1 cut(s)	380
XspI	CTAG	2 cut(s)	381, 704
ZrmI	AGTACT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.