Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

12191950 .. 12197093

Gene Structure 5144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG127800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGCCGCTCCCATGGAAGAAAACCCGGGTGGGGCGGATTTCCCAAATGGTGGCGGATCTACAATCCCCTAAAAAAGGCGGATCGCTAGTTGTCCAGACTGGATTCCCTGCTTCTCTTATAGATCTCTTCGTCAAAAACCGCGATCGGTTGAGAAAACGGTCGAAAAAGAACAACAACAAGAAGAATTCGGAAAAAAGGTCGGATTTTGACTCTGTTGACTGGGTCTCCGATCCGATCGCGTCCTGTTCTGAAAAGGGTTCCGGTGATTTGTCGATTTTGGCGGTACCCAGTTCGGGAGAGATCGAGAATTTCACCGCCGGAGAAGATGATCATGGTGTTTCGGAAGACACTGGTTCTCGGATTTCGGGTGAAACCGATGCGGGAAGTTCTGGAATTGTTGTTGAGGAATCGGGCCGTGGAAGCTGTGGAGATTTGACTTCGGTTTTTGTGGCGGTGGCGAAGGTGTTTGCGGTGGTGGCTTTGGCTCTGTGCACCACCAAGTTCGCCGTTGGGATCACGCTGTCTGCTTTTCTGCTTTTGTTTCTGGAATGCGTGGGTAAGCACTTTTCTTGTTTAGCGAAACCTTGCTCGAATGCGAAATCGGCTTTGCAATATATGGCTAAAAGGATCGGCTATGCAGTATTGGTTTTGAGGAGTGATGTGATCGTGAAAGAAAAGAGTGATGGTGTTGTGTTTGAATTCGTTGAACCTGGGGTTGAATCAGACTCTTCAATTGAAGAGATTGAGGTTGTGGAGCTTAAGAGTAGTGGTAGTGTGCGTATTGATGAAGGTATTGGTCAGAAGAGTTTGATTGAGTATTTGACTATGGATGGTGAGAAGTCGGAGAAGATTGAGACGGGTGATCATACAGATGACGTGTCGGTTTCGGTTTGTAAGAAGAGTAAGAGTAAGGGTAGAAAGAGGTGTGCGTCTAATATGGGAGCAAAGCTTATCAAGAGGTTTGTGCCTAAGAAATTGCGTAAGAAGAGTAAGAAGAATCAGTCTGGGGCGGAGCCGGAGCCAAAGGCAAGCAGTGAATCTTGTGTTGACATAGTAGAAGAGGGATTGGTAGAACAAGAAGGCCAAAGAGAAGGGTTCAGTGCTGAGGAAGAAGAAAGTGAAAACAGTTCAATGGTGTCAGTAAATTCAGTAAACAAGTGTGAAAAACAAGAAGCTGATGGAATAGTAACTTCATTGATTGTTGGAAAGAAGGGAACAGAAAGCAAAGGGAATTTTGGGTATCTGATTCTGTTTTTGATAGCTCTTGCTGGACTTGTTGGAGGTCGGGTTTTAGCTCTGATGCTTATAATCACTTGGTGCTTTATGTTGAAGGTGATTAGGTATTGGAGCAGATCAGGCGATATGCCCCTCCCCCTGAAAAGGTGTTCTTTCCCAATTTCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

468

Amino Acids

50.63

Weight (kDa)

8.13

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1307
Acc65I	GGTACC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	2 cut(s)	141, 239
AclWI	GGATC	5 cut(s)	63, 88, 224, 521, 635
AcsI	RAATTY	5 cut(s)	184, 307, 698, 1144, 1231
AdeI	CACNNNGTG	1 cut(s)	1317
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 293, 1380
AflII	CTTAAG	1 cut(s)	758
AflIII	ACRYGT	1 cut(s)	876
AgsI	TTSAA	7 cut(s)	698, 707, 719, 732, 737, 1131, 1330
AjiI	CACGTC	1 cut(s)	877
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	6 cut(s)	423, 757, 949, 1175, 1262, 1295
AluI	AGCT	6 cut(s)	423, 757, 949, 1175, 1262, 1295
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	2 cut(s)	229, 848
Alw44I	GTGCAC	1 cut(s)	490
AlwI	GGATC	5 cut(s)	63, 88, 224, 521, 635
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	2 cut(s)	412, 1081
ApaLI	GTGCAC	1 cut(s)	490
ApoI	RAATTY	5 cut(s)	184, 307, 698, 1144, 1231
Asp718I	GGTACC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	2 cut(s)	25, 26
AsuHPI	GGTGA	6 cut(s)	275, 304, 380, 845, 872, 1345
AvaI	CYCGRG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	1104
BccI	CCATC	3 cut(s)	677, 824, 1172
BceAI	ACGGC	2 cut(s)	399, 491
BciT130I	CCWGG	1 cut(s)	711
BclI	TGATCA	2 cut(s)	328, 862
BcnI	CCSGG	2 cut(s)	25, 26
BcoDI	GTCTC	2 cut(s)	229, 848
BfaI	CTAG	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	758
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	3 cut(s)	25, 26, 711
BmeT110I	CYCGRG	1 cut(s)	24
BmgBI	CACGTC	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	4 cut(s)	259, 285, 1014, 1020
BmrFI	CCNGG	3 cut(s)	25, 26, 711
BmrI	ACTGGG	2 cut(s)	229, 282
BmsI	GCATC	2 cut(s)	367, 1290
BmuI	ACTGGG	2 cut(s)	229, 282
BpiI	GAAGAC	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	1104
BpuMI	CCSGG	2 cut(s)	25, 26
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	4 cut(s)	11, 24, 415, 710
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 1272, 1302
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 293, 1380
Bse1I	ACTGG	4 cut(s)	103, 224, 288, 355
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	4 cut(s)	11, 24, 415, 710
BseGI	GGATG	1 cut(s)	835
BseLI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 293, 1380
BseMII	CTCAG	1 cut(s)	1095
BseNI	ACTGG	4 cut(s)	103, 224, 288, 355
BseRI	GAGGAG	1 cut(s)	667
BseSI	GKGCMC	1 cut(s)	494
Bsh1236I	CGCG	2 cut(s)	141, 239
Bsh1285I	CGRYCG	3 cut(s)	145, 161, 237
BshFI	GGCC	2 cut(s)	414, 1083
BshNI	GGYRCC	1 cut(s)	283
BsiEI	CGRYCG	3 cut(s)	145, 161, 237
BsiHKAI	GWGCWC	1 cut(s)	494
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	4 cut(s)	25, 261, 318, 1016
BslI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 293, 1380
BsmAI	GTCTC	2 cut(s)	229, 848
BsmBI	CGTCTC	1 cut(s)	848
BsmI	GAATGC	2 cut(s)	554, 598
BsnI	GGCC	2 cut(s)	414, 1083
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	2 cut(s)	414, 1083
BspCNI	CTCAG	1 cut(s)	1096
BspFNI	CGCG	2 cut(s)	141, 239
BspLI	GGNNCC	4 cut(s)	259, 285, 1014, 1020
BspPI	GGATC	5 cut(s)	63, 88, 224, 521, 635
BspT107I	GGYRCC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	7
BsrI	ACTGG	4 cut(s)	103, 224, 288, 355
BssECI	CCNNGG	4 cut(s)	11, 24, 415, 710
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	2 cut(s)	159, 1127
Bst6I	CTCTTC	7 cut(s)	131, 732, 733, 797, 893, 980, 1053
BstAFI	CTTAAG	1 cut(s)	758
BstC8I	GCNNGC	1 cut(s)	1030
BstDEI	CTNAG	2 cut(s)	969, 1104
BstDSI	CCRYGG	2 cut(s)	11, 415
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	835
BstFNI	CGCG	2 cut(s)	141, 239
BstMAI	GTCTC	2 cut(s)	229, 848
BstMCI	CGRYCG	3 cut(s)	145, 161, 237
BstMWI	GCNNNNNNNGC	4 cut(s)	420, 476, 602, 1356
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	3 cut(s)	23, 24, 709
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	2 cut(s)	141, 239
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	55, 121
BstYI	RGATCY	2 cut(s)	55, 121
BsuRI	GGCC	2 cut(s)	414, 1083
BtgI	CCRYGG	2 cut(s)	11, 415
BtrI	CACGTC	1 cut(s)	877
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	1 cut(s)	1039
BtsIMutI	CAGTG	3 cut(s)	348, 1039, 1105
Cac8I	GCNNGC	1 cut(s)	1030
Cfr13I	GGNCC	1 cut(s)	412
Cfr9I	CCCGGG	1 cut(s)	24
CseI	GACGC	2 cut(s)	228, 918
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	2 cut(s)	12, 332
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	969, 1104
DraIII	CACNNNGTG	1 cut(s)	1317
Eam1104I	CTCTTC	7 cut(s)	131, 732, 733, 797, 893, 980, 1053
EarI	CTCTTC	7 cut(s)	131, 732, 733, 797, 893, 980, 1053
EciI	GGCGGA	4 cut(s)	49, 68, 93, 1025
Eco130I	CCWWGG	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoRI	GAATTC	2 cut(s)	184, 698
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	2 cut(s)	15, 335
FalI	AAGNNNNNCTT	2 cut(s)	1372, 1404
FatI	CATG	2 cut(s)	11, 331
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	2 cut(s)	328, 862
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	414, 1083
HapII	CCGG	4 cut(s)	25, 261, 318, 1016
HgaI	GACGC	2 cut(s)	228, 918
Hin1II	CATG	2 cut(s)	15, 335
HincII	GTYRAC	2 cut(s)	217, 1048
HindII	GTYRAC	2 cut(s)	217, 1048
HindIII	AAGCTT	1 cut(s)	947
HinfI	GANTC	8 cut(s)	102, 209, 407, 719, 725, 997, 1037, 1246
HpaII	CCGG	4 cut(s)	25, 261, 318, 1016
HphI	GGTGA	6 cut(s)	275, 304, 380, 845, 872, 1345
Hpy166II	GTNNAC	4 cut(s)	217, 492, 1048, 1153
Hpy188III	TCNNGA	7 cut(s)	94, 294, 304, 390, 545, 667, 955
Hpy8I	GTNNAC	4 cut(s)	217, 492, 1048, 1153
HpyAV	CCTTC	6 cut(s)	454, 782, 1073, 1085, 1204, 1324
HpyCH4III	ACNGT	2 cut(s)	159, 1127
HpyCH4IV	ACGT	1 cut(s)	876
HpyCH4V	TGCA	3 cut(s)	492, 610, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	420, 476, 602, 1356
HpyF3I	CTNAG	2 cut(s)	969, 1104
HpySE526I	ACGT	1 cut(s)	876
Hsp92II	CATG	2 cut(s)	15, 335
KpnI	GGTACC	1 cut(s)	287
Ksp22I	TGATCA	2 cut(s)	328, 862
LmnI	GCTCC	6 cut(s)	12, 754, 941, 1012, 1018, 1347
LweI	GCATC	2 cut(s)	367, 1290
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	876
MaeIII	GTNAC	1 cut(s)	1186
MbiI	CCGCTC	1 cut(s)	7
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	2 cut(s)	55, 121
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	9 cut(s)	184, 307, 393, 698, 732, 974, 1144, 1231, 1395
MlyI	GAGTC	2 cut(s)	203, 719
MmeI	TCCRAC	4 cut(s)	180, 822, 1183, 1258
MnlI	CCTC	9 cut(s)	397, 645, 739, 915, 951, 1054, 1099, 1274, 1379
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	870
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	4 cut(s)	25, 261, 318, 1016
MspR9I	CCNGG	3 cut(s)	25, 26, 711
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	2 cut(s)	554, 598
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	2 cut(s)	141, 239
MwoI	GCNNNNNNNGC	4 cut(s)	420, 476, 602, 1356
NciI	CCSGG	2 cut(s)	25, 26
NcoI	CCATGG	1 cut(s)	11
NlaIII	CATG	2 cut(s)	15, 335
NlaIV	GGNNCC	4 cut(s)	259, 285, 1014, 1020
PctI	GAATGC	2 cut(s)	554, 598
PfeI	GAWTC	6 cut(s)	102, 407, 719, 997, 1037, 1246
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	2 cut(s)	145, 237
PleI	GAGTC	2 cut(s)	203, 719
PpsI	GAGTC	2 cut(s)	203, 719
PsiI	TTATAA	1 cut(s)	1307
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	4 cut(s)	259, 285, 1014, 1020
PspPI	GGNCC	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	55, 121
PsyI	GACNNNGTC	1 cut(s)	221
PvuI	CGATCG	2 cut(s)	145, 237
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	2 cut(s)	203, 719
ScrFI	CCNGG	3 cut(s)	25, 26, 711
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	2 cut(s)	367, 1290
SmaI	CCCGGG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	9 cut(s)	184, 307, 393, 698, 732, 974, 1144, 1231, 1395
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	3 cut(s)	23, 24, 709
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	159, 1127
TaiI	ACGT	1 cut(s)	879
TaqI	TCGA	4 cut(s)	161, 272, 303, 590
TasI	AATT	9 cut(s)	184, 307, 393, 698, 732, 974, 1144, 1231, 1395
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	6 cut(s)	102, 407, 719, 997, 1037, 1246
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	3 cut(s)	355, 1039, 1105
TspDTI	ATGAA	2 cut(s)	801, 1182
TspMI	CCCGGG	1 cut(s)	24
TspRI	CASTG	3 cut(s)	355, 1039, 1105
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	758
VneI	GTGCAC	1 cut(s)	490
XagI	CCTNNNNNAGG	1 cut(s)	72
XapI	RAATTY	5 cut(s)	184, 307, 698, 1144, 1231
XmaI	CCCGGG	1 cut(s)	24
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.