Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Forward (+)

12566537 .. 12573230

Gene Structure 6694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG130200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGCCGCTCCCATGGAAGAAAACCCGGGTGGGGCGGATTTCCCAAATGGTGGCGGATCTACAATCCCCGAAAAAAGGCGGATCGCTAGTTGTCCAGACTGGATTCCCTGCTTCTCTTATAGATCTCTTCGTCAAAAACCGCGATCGGTTGAGAAAACGGTCGAAAAATAACAACAACAAGAAGAAGAATTCGGAAAAAAGGTCCGATTTTGACTCTGTTGACCGGGTCTCCGATCCGATCGTGTCGCGTTCTGAAAAGGGTTCCGGTGATTCGTCGATTTTGGTGGCACCCAGTTCGGGAGAGATCGAGAATTTCACCGCCGGAGAAGATGGTCACGGTGTTTCGGAAGACACTGGTTCTCGGGCTTCGGGTGCAATCGAGGCGGGAAGTTCTGGAATTGTTGTTGAGGAATCGGGCCGTGGAAGCTGTGGAGATTTGACTTCGGTTTTTGTGGCGGTGGCGAAGGTGTTTGCGGTGGTGGCTTTGGCTCTGTGCACCACCAAGTTCGCCGTTGGGATCACGCTGTCTGCTTTTCTGCTTTTGTTTCTGGAATGCGTGGGTAAGCACTTTTCTTGTTTAGCGAAACCTTGCTCGAATGCGAAGTCGGCTTTGCAATATATGGCTAAAAGGATCGGCTATGCAGTTTTGGTTTTGAGGAGTGATGTGATTGTGAAAGAAAAGAGTGATGGTGTTGTGTTTGAATTGGTTGAACCTGGGGTTGAATCAGACTCTTCATTTGAAGAGATTGAGGTTGTGGAGCTTAAGAGTAGTGGTAGTGTGCGTATTGATGAAGGTATTGGTCAGAAGAGTTTGATTGAGTATTTGAATATGGATGGTGAGAAGTCGGAGAAGATTGAGACGGGTGATCATACAGATGACTTGTCGGTTTCGGTTTGTAAGAAGAGTAAGAGTAAGGGTAGAAAGAGGTGTGTGTCTAATATGGGAGCAAAGCTTATCAAGAGGTTTGTGCCTAAGAAATTGCGTAAGAAGAATCGGTCTGGGGCGGAGCCGGAGCCAAAGCCAAGCAGTGAATCTTGTGTTGACATAGCAGAAGAGGGATTGGTAGAACAAGAAAGCCAAAGAGAAGGGTTCAGTGCTGAGGAAGTAGAAAGTGAAAACAGTTCAATGGTGTCAGTAAATTCAGTAAACAAGTGTGAAAAACAAGAAGCTGATGGAATAGTAACTTCATTGATTGTTGGAAAGAAGGGAACAGAAAGCAAAGGGAATTTTGGGTATCTGATTCTGTTTTTGATAGCTCTTGCTGGACTTGTTGGAGGTCGGGTTTTAGCTCTGTTGCTTATAATCACTTGGTGCTTTATGTTGAAGGTGATTAGGTCTTGGAGCAGTTCAGGCGATATGCCCCTCCCCCTGAAAAGGTGTTCTTTCCCAATTTCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

466

Amino Acids

50.21

Weight (kDa)

8.61

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1301
AccB1I	GGYRCC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	2 cut(s)	141, 247
AclWI	GGATC	5 cut(s)	63, 88, 227, 524, 638
AcsI	RAATTY	4 cut(s)	187, 310, 1138, 1225
AdeI	CACNNNGTG	1 cut(s)	1311
AfiI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 296, 1374
AflII	CTTAAG	1 cut(s)	761
AgsI	TTSAA	7 cut(s)	701, 710, 722, 740, 826, 1125, 1324
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	6 cut(s)	426, 760, 952, 1169, 1256, 1289
AluI	AGCT	6 cut(s)	426, 760, 952, 1169, 1256, 1289
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	232, 851
Alw44I	GTGCAC	1 cut(s)	493
AlwI	GGATC	5 cut(s)	63, 88, 227, 524, 638
Ama87I	CYCGRG	2 cut(s)	24, 360
AoxI	GGCC	1 cut(s)	415
ApaLI	GTGCAC	1 cut(s)	493
ApoI	RAATTY	4 cut(s)	187, 310, 1138, 1225
ArsI	GACNNNNNNTTYG	4 cut(s)	587, 619, 719, 751
AspS9I	GGNCC	2 cut(s)	201, 415
AsuC2I	CCSGG	3 cut(s)	25, 26, 224
AsuHPI	GGTGA	5 cut(s)	278, 307, 848, 875, 1339
AvaI	CYCGRG	2 cut(s)	24, 360
AvaII	GGWCC	1 cut(s)	201
BaeGI	GKGCMC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	497
BbvCI	CCTCAGC	1 cut(s)	1098
BccI	CCATC	4 cut(s)	323, 680, 827, 1166
BceAI	ACGGC	2 cut(s)	402, 494
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BciT130I	CCWGG	1 cut(s)	714
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	3 cut(s)	25, 26, 224
BcoDI	GTCTC	2 cut(s)	232, 851
BfaI	CTAG	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	761
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	4 cut(s)	25, 26, 224, 714
Bme18I	GGWCC	1 cut(s)	201
BmeT110I	CYCGRG	2 cut(s)	24, 360
BmgT120I	GGNCC	2 cut(s)	201, 415
BmiI	GGNNCC	4 cut(s)	262, 288, 1008, 1014
BmrFI	CCNGG	4 cut(s)	25, 26, 224, 714
BmrI	ACTGGG	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	1098
BpuMI	CCSGG	3 cut(s)	25, 26, 224
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	11, 24, 418, 713
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 1266, 1296
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 296, 1374
Bse1I	ACTGG	3 cut(s)	103, 291, 358
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	4 cut(s)	11, 24, 418, 713
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 296, 1374
BseMII	CTCAG	1 cut(s)	1089
BseNI	ACTGG	3 cut(s)	103, 291, 358
BseRI	GAGGAG	1 cut(s)	670
BseSI	GKGCMC	1 cut(s)	497
Bsh1236I	CGCG	2 cut(s)	141, 247
Bsh1285I	CGRYCG	3 cut(s)	145, 161, 240
BshFI	GGCC	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	286
BsiEI	CGRYCG	3 cut(s)	145, 161, 240
BsiHKAI	GWGCWC	1 cut(s)	497
BsiHKCI	CYCGRG	2 cut(s)	24, 360
BsiSI	CCGG	5 cut(s)	25, 223, 264, 321, 1010
BslI	CCNNNNNNNGG	5 cut(s)	30, 49, 74, 296, 1374
BsmAI	GTCTC	2 cut(s)	232, 851
BsmBI	CGTCTC	1 cut(s)	851
BsmI	GAATGC	2 cut(s)	557, 601
BsnI	GGCC	1 cut(s)	417
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	2 cut(s)	24, 360
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	1090
BspFNI	CGCG	2 cut(s)	141, 247
BspLI	GGNNCC	4 cut(s)	262, 288, 1008, 1014
BspPI	GGATC	5 cut(s)	63, 88, 227, 524, 638
BspT107I	GGYRCC	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	7
BsrI	ACTGG	3 cut(s)	103, 291, 358
BssECI	CCNNGG	4 cut(s)	11, 24, 418, 713
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	3 cut(s)	159, 338, 1121
Bst6I	CTCTTC	6 cut(s)	131, 735, 736, 800, 896, 1047
BstAFI	CTTAAG	1 cut(s)	761
BstDEI	CTNAG	2 cut(s)	972, 1098
BstDSI	CCRYGG	2 cut(s)	11, 418
BstF5I	GGATG	1 cut(s)	838
BstFNI	CGCG	2 cut(s)	141, 247
BstMAI	GTCTC	2 cut(s)	232, 851
BstMCI	CGRYCG	3 cut(s)	145, 161, 240
BstMWI	GCNNNNNNNGC	6 cut(s)	371, 380, 423, 479, 605, 1350
BstNI	CCWGG	1 cut(s)	714
BstSCI	CCNGG	4 cut(s)	23, 24, 222, 712
BstSLI	GKGCMC	1 cut(s)	497
BstUI	CGCG	2 cut(s)	141, 247
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	2 cut(s)	55, 121
BstYI	RGATCY	2 cut(s)	55, 121
BsuRI	GGCC	1 cut(s)	417
BtgI	CCRYGG	2 cut(s)	11, 418
BtsCI	GGATG	1 cut(s)	838
BtsI	GCAGTG	1 cut(s)	1033
BtsIMutI	CAGTG	3 cut(s)	351, 1033, 1099
Cfr13I	GGNCC	2 cut(s)	201, 415
Cfr9I	CCCGGG	1 cut(s)	24
CviAII	CATG	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	972, 1098
DraIII	CACNNNGTG	1 cut(s)	1311
Eam1104I	CTCTTC	6 cut(s)	131, 735, 736, 800, 896, 1047
EarI	CTCTTC	6 cut(s)	131, 735, 736, 800, 896, 1047
EciI	GGCGGA	4 cut(s)	49, 68, 93, 1019
Eco130I	CCWWGG	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	201
Eco88I	CYCGRG	2 cut(s)	24, 360
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	851
FaeI	CATG	1 cut(s)	15
FalI	AAGNNNNNCTT	2 cut(s)	1366, 1398
FatI	CATG	1 cut(s)	11
FauI	CCCGC	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	845
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	5 cut(s)	25, 223, 264, 321, 1010
Hin1II	CATG	1 cut(s)	15
HincII	GTYRAC	2 cut(s)	220, 1042
HindII	GTYRAC	2 cut(s)	220, 1042
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	9 cut(s)	102, 212, 269, 410, 722, 728, 991, 1031, 1240
HpaII	CCGG	5 cut(s)	25, 223, 264, 321, 1010
HphI	GGTGA	5 cut(s)	278, 307, 848, 875, 1339
Hpy166II	GTNNAC	4 cut(s)	220, 495, 1042, 1147
Hpy188III	TCNNGA	6 cut(s)	94, 297, 307, 393, 548, 958
Hpy8I	GTNNAC	4 cut(s)	220, 495, 1042, 1147
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	5 cut(s)	457, 785, 1079, 1198, 1318
HpyCH4III	ACNGT	3 cut(s)	159, 338, 1121
HpyCH4V	TGCA	4 cut(s)	374, 495, 613, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	371, 380, 423, 479, 605, 1350
HpyF3I	CTNAG	2 cut(s)	972, 1098
Hsp92II	CATG	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	865
LmnI	GCTCC	6 cut(s)	12, 757, 944, 1006, 1012, 1341
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	332, 1180
MbiI	CCGCTC	1 cut(s)	7
MflI	RGATCY	2 cut(s)	55, 121
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	8 cut(s)	187, 310, 396, 701, 977, 1138, 1225, 1389
MlyI	GAGTC	2 cut(s)	206, 722
MmeI	TCCRAC	3 cut(s)	825, 1177, 1252
MseI	TTAA	1 cut(s)	762
MslI	CAYNNNNRTG	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	5 cut(s)	25, 223, 264, 321, 1010
MspR9I	CCNGG	4 cut(s)	25, 26, 224, 714
Mva1269I	GAATGC	2 cut(s)	557, 601
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	2 cut(s)	141, 247
MwoI	GCNNNNNNNGC	6 cut(s)	371, 380, 423, 479, 605, 1350
NciI	CCSGG	3 cut(s)	25, 26, 224
NcoI	CCATGG	1 cut(s)	11
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	4 cut(s)	262, 288, 1008, 1014
NmuCI	GTSAC	1 cut(s)	332
PctI	GAATGC	2 cut(s)	557, 601
PfeI	GAWTC	7 cut(s)	102, 269, 410, 722, 991, 1031, 1240
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	2 cut(s)	145, 240
PleI	GAGTC	2 cut(s)	206, 722
PpsI	GAGTC	2 cut(s)	206, 722
PsiI	TTATAA	1 cut(s)	1301
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	4 cut(s)	262, 288, 1008, 1014
PspPI	GGNCC	2 cut(s)	201, 415
PsuI	RGATCY	2 cut(s)	55, 121
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	2 cut(s)	145, 240
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	2 cut(s)	201, 415
SchI	GAGTC	2 cut(s)	206, 722
ScrFI	CCNGG	4 cut(s)	25, 26, 224, 714
SduI	GDGCHC	1 cut(s)	497
SinI	GGWCC	1 cut(s)	201
SmaI	CCCGGG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	8 cut(s)	187, 310, 396, 701, 977, 1138, 1225, 1389
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	23, 24, 222, 712
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	159, 338, 1121
TaqI	TCGA	5 cut(s)	161, 275, 306, 378, 593
TaqII	GACCGA	1 cut(s)	984
TasI	AATT	8 cut(s)	187, 310, 396, 701, 977, 1138, 1225, 1389
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	7 cut(s)	102, 269, 410, 722, 991, 1031, 1240
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	3 cut(s)	358, 1033, 1099
TseFI	GTSAC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	723, 804, 1176
TspMI	CCCGGG	1 cut(s)	24
TspRI	CASTG	3 cut(s)	358, 1033, 1099
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	761
VneI	GTGCAC	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	4 cut(s)	187, 310, 1138, 1225
XmaI	CCCGGG	1 cut(s)	24
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.