Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039295.1

Orthogroup ID

OG0002810

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 748

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039295.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

gactggattccctgcttctcttatagatctcttcgtcaaaaaccgcgatcggttgagaaaacggtcgaaaaataacaacaacaagaagaagaattcggaaaaaaggtccgattttgactctgttgaccgggtctccgatccgatcgtgtcgcgttctgaaaagggttccggtgattcgtcgattttggtggtacccagttcgggagagatcgagaatttcaccgccggagaagatggtcgtggtgtttcggaagacactggttctcgggtttcgggtgaaatcgaggcgggaagttctggaattgttgttgaggaatcgggccgtggaagctgtggagatttgacttcggtttttgtggcggtggcgaaggtgtttgcggtggtggctttggctctgtgcaccaccaagttcgccgttgggatcacgctgtctgcttttctgcttttgtttctggaatgcgtgggtaagcacttttcttgtttagcgaaaccttgctcgaatgcgaagtcggctttgcaatatatggctaaaaggatcggctatgcagtattggttttgaggagtgatgtgattgtgaaagaaaagagtgacggtgttgtgtttgaattggttgaacctggggttgaatcagactcttcatttgaagagattgaggtcgtggagcttaagagtagtggtagtgtgcgtattgatgaaggtattggtcagaagagtttgattgagtatttgaatatggatggtgagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

26.52

Weight (kDa)

5.14

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20880 AT5G44350
fragaria_vesca	FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_3g10700 FvH4_6g34930
malus_domestica	MD05G1269300.v1.1 MD10G1248100.v1.1
prunus_persica	Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1 Prupe.4G095400_v2.0.a1
pyrus_communis	pycom05g25210 pycom10g20560
rosa_chinensis	RchiOBHm_Chr2g0145901 RchiOBHm_Chr5g0017411
rosa_laevigata	RLG00000020172 RLG00000032285 RLG00000036255
rosa_multiflora	Rmu_sc0001173.1_g000015 Rmu_sc0001702.1_g000004 Rmu_sc0007392.1_g000006 Rmu_sc0019163.1_g000001 Rmu_sc0039295.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434790 Rroxscaffold_1G00059980 Rroxscaffold_2G00100390 Rroxscaffold_4G00332040
rosa_rugosa	Rorug05G0035100 Rorug05G0035200
rosa_samantha	Rh2AG448100 Rh2CG435100 Rh5AG130100 Rh5BG127800 Rh5CG140600 Rh5DG130200 Rh5DG339900
rosa_wichuraiana	Rw2G036610 Rw5G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccII	CGCG	2 cut(s)	46, 152
AciI	CCGC	5 cut(s)	44, 223, 288, 360, 378
AclWI	GGATC	3 cut(s)	132, 429, 543
AcsI	RAATTY	2 cut(s)	92, 215
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflII	CTTAAG	1 cut(s)	666
AgsI	TTSAA	5 cut(s)	606, 615, 627, 645, 731
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	2 cut(s)	331, 665
AluI	AGCT	2 cut(s)	331, 665
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	3 cut(s)	132, 429, 543
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	1 cut(s)	320
ApaLI	GTGCAC	1 cut(s)	398
ApoI	RAATTY	2 cut(s)	92, 215
ArsI	GACNNNNNNTTYG	4 cut(s)	492, 524, 624, 656
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	106, 320
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	3 cut(s)	183, 212, 288
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	402
BccI	CCATC	2 cut(s)	228, 732
BceAI	ACGGC	2 cut(s)	307, 399
BciT130I	CCWGG	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	137
BfrI	CTTAAG	1 cut(s)	666
BglII	AGATCT	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	129, 619
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	106, 320
BmiI	GGNNCC	2 cut(s)	167, 193
BmrFI	CCNGG	2 cut(s)	129, 619
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	323, 618
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	8, 196, 263
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	2 cut(s)	323, 618
BseGI	GGATG	1 cut(s)	743
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	8, 196, 263
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	402
Bsh1236I	CGCG	2 cut(s)	46, 152
Bsh1285I	CGRYCG	3 cut(s)	50, 66, 145
BshFI	GGCC	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	3 cut(s)	50, 66, 145
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	3 cut(s)	128, 169, 226
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	2 cut(s)	462, 506
BsnI	GGCC	1 cut(s)	322
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	7 cut(s)	26, 47, 137, 142, 208, 421, 535
BspACI	CCGC	5 cut(s)	44, 223, 288, 360, 378
BspANI	GGCC	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	46, 152
BspLI	GGNNCC	2 cut(s)	167, 193
BspPI	GGATC	3 cut(s)	132, 429, 543
BspT107I	GGYRCC	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	666
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	8, 196, 263
BssECI	CCNNGG	2 cut(s)	323, 618
BssMI	GATC	7 cut(s)	26, 47, 137, 142, 208, 421, 535
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	64, 594
Bst6I	CTCTTC	4 cut(s)	36, 640, 641, 705
BstAFI	CTTAAG	1 cut(s)	666
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	743
BstFNI	CGCG	2 cut(s)	46, 152
BstKTI	GATC	7 cut(s)	29, 50, 140, 145, 211, 424, 538
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	7 cut(s)	26, 47, 137, 142, 208, 421, 535
BstMCI	CGRYCG	3 cut(s)	50, 66, 145
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 384, 510
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	127, 617
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	2 cut(s)	46, 152
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	743
BtsIMutI	CAGTG	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	106, 320
Csp6I	GTAC	1 cut(s)	192
CviJI	RGCY	8 cut(s)	322, 331, 387, 393, 513, 528, 541, 665
CviKI_1	RGCY	8 cut(s)	322, 331, 387, 393, 513, 528, 541, 665
CviQI	GTAC	1 cut(s)	192
DpnI	GATC	7 cut(s)	28, 49, 139, 144, 210, 423, 537
DpnII	GATC	7 cut(s)	26, 47, 137, 142, 208, 421, 535
Eam1104I	CTCTTC	4 cut(s)	36, 640, 641, 705
EarI	CTCTTC	4 cut(s)	36, 640, 641, 705
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	617
FaiI	YATR	5 cut(s)	24, 523, 525, 544, 735
FauI	CCCGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	3 cut(s)	128, 169, 226
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HinfI	GANTC	6 cut(s)	7, 117, 174, 315, 627, 633
HpaII	CCGG	3 cut(s)	128, 169, 226
HphI	GGTGA	3 cut(s)	183, 212, 288
Hpy166II	GTNNAC	2 cut(s)	125, 400
Hpy188I	TCNGA	8 cut(s)	98, 110, 137, 142, 158, 251, 632, 709
Hpy188III	TCNNGA	4 cut(s)	202, 212, 298, 453
Hpy8I	GTNNAC	2 cut(s)	125, 400
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	362, 690
HpyCH4III	ACNGT	2 cut(s)	64, 594
HpyCH4V	TGCA	3 cut(s)	400, 518, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 384, 510
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	7 cut(s)	26, 47, 137, 142, 208, 421, 535
LmnI	GCTCC	1 cut(s)	662
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	7 cut(s)	28, 49, 139, 144, 210, 423, 537
MboI	GATC	7 cut(s)	26, 47, 137, 142, 208, 421, 535
MboII	GAAGA	8 cut(s)	23, 98, 101, 243, 264, 628, 657, 722
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	4 cut(s)	92, 215, 301, 606
MlyI	GAGTC	2 cut(s)	111, 627
MnlI	CCTC	4 cut(s)	278, 305, 553, 647
MseI	TTAA	1 cut(s)	667
MspCI	CTTAAG	1 cut(s)	666
MspI	CCGG	3 cut(s)	128, 169, 226
MspR9I	CCNGG	2 cut(s)	129, 619
Mva1269I	GAATGC	2 cut(s)	462, 506
MvaI	CCWGG	1 cut(s)	619
MvnI	CGCG	2 cut(s)	46, 152
MwoI	GCNNNNNNNGC	3 cut(s)	328, 384, 510
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	7 cut(s)	26, 47, 137, 142, 208, 421, 535
NlaIV	GGNNCC	2 cut(s)	167, 193
NmuCI	GTSAC	1 cut(s)	588
PctI	GAATGC	2 cut(s)	462, 506
PfeI	GAWTC	4 cut(s)	7, 174, 315, 627
PflFI	GACNNNGTC	1 cut(s)	129
Ple19I	CGATCG	2 cut(s)	50, 145
PleI	GAGTC	2 cut(s)	111, 627
PpsI	GAGTC	2 cut(s)	111, 627
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	2 cut(s)	167, 193
PspPI	GGNCC	2 cut(s)	106, 320
PsuI	RGATCY	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	129
PvuI	CGATCG	2 cut(s)	50, 145
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	667
Sau3AI	GATC	7 cut(s)	26, 47, 137, 142, 208, 421, 535
Sau96I	GGNCC	2 cut(s)	106, 320
SchI	GAGTC	2 cut(s)	111, 627
ScrFI	CCNGG	2 cut(s)	129, 619
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	8 cut(s)	108, 333, 373, 494, 620, 658, 667, 701
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	4 cut(s)	92, 215, 301, 606
SsiI	CCGC	5 cut(s)	44, 223, 288, 360, 378
StyD4I	CCNGG	2 cut(s)	127, 617
TaaI	ACNGT	2 cut(s)	64, 594
TaqI	TCGA	5 cut(s)	66, 180, 211, 283, 498
TasI	AATT	4 cut(s)	92, 215, 301, 606
TfiI	GAWTC	4 cut(s)	7, 174, 315, 627
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	588
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	2 cut(s)	628, 709
TspRI	CASTG	1 cut(s)	263
Tth111I	GACNNNGTC	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	666
VneI	GTGCAC	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	2 cut(s)	92, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.