Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Forward (+)

12675708 .. 12679203

Gene Structure 3496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATGATCTCCCAATTCTTCGTCTTATCTCAGCGAGGAGATAACATCGTCTTCCGTGACTACCGGGCTGAGGTACCCAAAGGAAGTACAGAGACATTCTTCCGTAAAGTCAAGTTCTGGAAGGAGGATGGCAATGCAGAGGCGCCACCTATCTTTAATGTCGATGGCGTGAACTACTTCCATGTCAAGGTTGTTGGTCTATATTTTGTTGCGACAACGAGAGTTAACGTGTCACCCTCTCTTGTTTTGGAGCTTCTACAAAGGATTGCTCGTGTTATTAAGGATTATCTTGGTGTTCTGAATGAAGATTCATTCAGGAAAAACTTTGTGCTCGTGTATGAGTTGCTTGATGAAGTTATTGATTTTGGTTACGTGCAAACTACATCTACCGAAGTTTTGAAATCTTATATATTCAATGAGCCGATTGTGGTTTCTCCTGCCCGCCTTCAGCCTATTGATCCTGCTGCCATTTTCACACAAGGAGCCAAAAGAATGCCTGGAACTGCAGTTACAAAATCGGTTGTGGCTAATGATCCTGGGGGTCGGAGAAGAGAGGAAATTTTTGTGGACATCATCGAGAAAATCAGTGTTACTTTTAGTTCAAGCGGATATATACTGACTTCTGAGATTGATGGCACCATTCAAATGAAGAGCTATCTTTCTGGTAATCCAGAAATCCGTTTAGCTCTTAATGAAGACCTAAACATAGGAAGAGGAGGGAGATCAGTATATGATTATAGGAGTTCTTCAGGTTCAGGGGTGATACTTGATGATTGTAACTTTCATGAGTCTGTTCGTCTGGATAGCTTCGATTCAGATAGAACTTTGTCCCTGGTTCCACCAGATGGTGAATTTCCAGTAATGAATTACCGTATGACTCAGGAGTTCAAGCCTCCTTTTCATGTTAATACCTTGATTGAAGAGGCTGGACGTCTTAAGGCTGAAGTGATTATTAAAATACGCGCTGAGTTCCCTTCAGACATAATTGCAAACACAATCACTGTTCAGATGCCATTGCCAAATTATACTTCCAGGGCTAGTTTTGAGTTAGAACCCGGTGCTGCTGGACAGAGGACAGATTTCAAGGAATCCAACAAAATGCTTGAATGGAATTTAAAAAAGGCAAATTGTTGGCGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

380

Amino Acids

42.88

Weight (kDa)

5.53

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	2 - 133	1.5e-07	Clathrin adaptor complex small chain
Adap_comp_sub	PF00928	183 - 451	8e-80	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	934
Acc65I	GGTACC	1 cut(s)	73
AccB1I	GGYRCC	3 cut(s)	73, 142, 635
AccB7I	CCANNNNNTGG	1 cut(s)	845
AccII	CGCG	1 cut(s)	963
AciI	CCGC	3 cut(s)	442, 606, 1135
AclWI	GGATC	2 cut(s)	452, 527
AcsI	RAATTY	3 cut(s)	558, 851, 1111
AcuI	CTGAAG	4 cut(s)	431, 732, 960, 963
AcyI	GRCGYC	2 cut(s)	143, 931
AfaI	GTAC	2 cut(s)	75, 88
AfiI	CCNNNNNNNGG	3 cut(s)	70, 187, 845
AflII	CTTAAG	1 cut(s)	935
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	8 cut(s)	400, 415, 603, 644, 889, 920, 1084, 1106
AjnI	CCWGG	4 cut(s)	496, 535, 831, 1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	1012, 1044
AluBI	AGCT	4 cut(s)	253, 654, 686, 807
AluI	AGCT	4 cut(s)	253, 654, 686, 807
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	452, 527
ApeKI	GCWGC	2 cut(s)	464, 1061
ApoI	RAATTY	3 cut(s)	558, 851, 1111
Asp700I	GAANNNNTTC	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	145, 965
AsuC2I	CCSGG	2 cut(s)	65, 1056
AsuHPI	GGTGA	3 cut(s)	225, 772, 860
BanI	GGYRCC	3 cut(s)	73, 142, 635
BauI	CACGAG	2 cut(s)	270, 332
BbsI	GAAGAC	2 cut(s)	43, 702
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	451, 1048
BccI	CCATC	4 cut(s)	122, 158, 626, 839
BciT130I	CCWGG	4 cut(s)	498, 537, 833, 1033
BcnI	CCSGG	2 cut(s)	65, 1056
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	1038
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	146
BfrI	CTTAAG	1 cut(s)	935
BisI	GCNGC	2 cut(s)	465, 1062
BlsI	GCNGC	2 cut(s)	466, 1063
Bme1390I	CCNGG	6 cut(s)	65, 498, 537, 833, 1033, 1056
BmiI	GGNNCC	5 cut(s)	75, 144, 484, 637, 837
BmrFI	CCNGG	6 cut(s)	65, 498, 537, 833, 1033, 1056
BmsI	GCATC	1 cut(s)	999
BpiI	GAAGAC	2 cut(s)	43, 702
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	65, 1056
BsaAI	YACGTR	1 cut(s)	373
BsaHI	GRCGYC	2 cut(s)	143, 931
BsaJI	CCNNGG	3 cut(s)	536, 831, 1032
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 187, 845
Bse1I	ACTGG	1 cut(s)	857
Bse3DI	GCAATG	2 cut(s)	139, 1013
BseBI	CCWGG	4 cut(s)	498, 537, 833, 1033
BseDI	CCNNGG	3 cut(s)	536, 831, 1032
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	3 cut(s)	70, 187, 845
BseMI	GCAATG	2 cut(s)	139, 1013
BseMII	CTCAG	5 cut(s)	44, 60, 615, 893, 957
BseNI	ACTGG	1 cut(s)	857
BseRI	GAGGAG	2 cut(s)	51, 729
BseXI	GCAGC	2 cut(s)	451, 1048
Bsh1236I	CGCG	1 cut(s)	963
BshNI	GGYRCC	3 cut(s)	73, 142, 635
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	64, 1056
BslFI	GGGAC	1 cut(s)	814
BslI	CCNNNNNNNGG	3 cut(s)	70, 187, 845
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	814
BsmI	GAATGC	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	6, 457, 532, 722
BspACI	CCGC	3 cut(s)	442, 606, 1135
BspCNI	CTCAG	5 cut(s)	43, 61, 616, 892, 958
BspFNI	CGCG	1 cut(s)	963
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	5 cut(s)	75, 144, 484, 637, 837
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	452, 527
BspQI	GCTCTTC	1 cut(s)	644
BspT107I	GGYRCC	3 cut(s)	73, 142, 635
BspTI	CTTAAG	1 cut(s)	935
BsrDI	GCAATG	2 cut(s)	139, 1013
BsrI	ACTGG	1 cut(s)	857
BssECI	CCNNGG	3 cut(s)	536, 831, 1032
BssMI	GATC	4 cut(s)	6, 457, 532, 722
BssNI	GRCGYC	2 cut(s)	143, 931
BssSI	CACGAG	2 cut(s)	270, 332
Bst2BI	CACGAG	2 cut(s)	270, 332
Bst2UI	CCWGG	4 cut(s)	498, 537, 833, 1033
Bst4CI	ACNGT	2 cut(s)	872, 1003
Bst6I	CTCTTC	4 cut(s)	544, 644, 706, 915
BstACI	GRCGYC	2 cut(s)	143, 931
BstAFI	CTTAAG	1 cut(s)	935
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	5 cut(s)	30, 69, 624, 879, 966
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	963
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	2 cut(s)	145, 965
BstKTI	GATC	4 cut(s)	9, 460, 535, 725
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	6, 457, 532, 722
BstNI	CCWGG	4 cut(s)	498, 537, 833, 1033
BstSCI	CCNGG	6 cut(s)	63, 496, 535, 831, 1031, 1054
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	1 cut(s)	963
BstV1I	GCAGC	2 cut(s)	451, 1048
BstV2I	GAAGAC	2 cut(s)	43, 702
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	592, 999
Cac8I	GCNNGC	1 cut(s)	442
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	2 cut(s)	145, 965
Csp6I	GTAC	2 cut(s)	74, 87
CviAII	CATG	3 cut(s)	182, 785, 902
CviQI	GTAC	2 cut(s)	74, 87
DdeI	CTNAG	5 cut(s)	30, 69, 624, 879, 966
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	4 cut(s)	8, 459, 534, 724
DpnII	GATC	4 cut(s)	6, 457, 532, 722
DraI	TTTAAA	1 cut(s)	1116
Eam1104I	CTCTTC	4 cut(s)	544, 644, 706, 915
EarI	CTCTTC	4 cut(s)	544, 644, 706, 915
Eco57I	CTGAAG	4 cut(s)	431, 732, 960, 963
EcoRII	CCWGG	4 cut(s)	496, 535, 831, 1031
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	3 cut(s)	185, 788, 905
FaqI	GGGAC	1 cut(s)	814
FatI	CATG	3 cut(s)	181, 784, 901
FauI	CCCGC	2 cut(s)	449, 1128
Fnu4HI	GCNGC	2 cut(s)	465, 1062
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	465, 1062
FspBI	CTAG	1 cut(s)	1038
GlaI	GCGC	2 cut(s)	144, 964
GluI	GCNGC	2 cut(s)	465, 1062
HaeII	RGCGCY	1 cut(s)	146
HapII	CCGG	2 cut(s)	64, 1056
HhaI	GCGC	2 cut(s)	145, 965
Hin1I	GRCGYC	2 cut(s)	143, 931
Hin1II	CATG	3 cut(s)	185, 788, 905
Hin6I	GCGC	2 cut(s)	143, 963
HinP1I	GCGC	2 cut(s)	143, 963
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	5 cut(s)	308, 788, 812, 877, 1088
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	64, 1056
HphI	GGTGA	3 cut(s)	225, 772, 860
Hpy166II	GTNNAC	3 cut(s)	172, 226, 568
Hpy188I	TCNGA	6 cut(s)	300, 546, 625, 817, 979, 1008
Hpy188III	TCNNGA	7 cut(s)	118, 316, 577, 671, 785, 800, 881
Hpy8I	GTNNAC	3 cut(s)	172, 226, 568
HpyAV	CCTTC	3 cut(s)	115, 455, 984
HpyCH4III	ACNGT	2 cut(s)	872, 1003
HpyCH4IV	ACGT	3 cut(s)	228, 372, 931
HpyCH4V	TGCA	4 cut(s)	137, 376, 506, 989
HpyF3I	CTNAG	5 cut(s)	30, 69, 624, 879, 966
HpySE526I	ACGT	3 cut(s)	228, 372, 931
Hsp92I	GRCGYC	2 cut(s)	143, 931
Hsp92II	CATG	3 cut(s)	185, 788, 905
HspAI	GCGC	2 cut(s)	143, 963
KasI	GGCGCC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	6, 457, 532, 722
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	2 cut(s)	250, 482
Lsp1109I	GCAGC	2 cut(s)	451, 1048
LweI	GCATC	1 cut(s)	999
MaeI	CTAG	1 cut(s)	1038
MaeII	ACGT	3 cut(s)	228, 372, 931
MaeIII	GTNAC	6 cut(s)	56, 231, 368, 508, 589, 776
MalI	GATC	4 cut(s)	8, 459, 534, 724
MboI	GATC	4 cut(s)	6, 457, 532, 722
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	8 cut(s)	14, 558, 851, 865, 984, 1021, 1111, 1126
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	797, 871
MmeI	TCCRAC	2 cut(s)	524, 1116
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	8 cut(s)	156, 225, 279, 690, 906, 936, 954, 1115
MslI	CAYNNNNRTG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	935
MspI	CCGG	2 cut(s)	64, 1056
MspR9I	CCNGG	6 cut(s)	65, 498, 537, 833, 1033, 1056
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	4 cut(s)	498, 537, 833, 1033
MvnI	CGCG	1 cut(s)	963
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	2 cut(s)	65, 1056
NdeII	GATC	4 cut(s)	6, 457, 532, 722
NlaIII	CATG	3 cut(s)	185, 788, 905
NlaIV	GGNNCC	5 cut(s)	75, 144, 484, 637, 837
NmuCI	GTSAC	2 cut(s)	56, 231
PagI	TCATGA	1 cut(s)	784
PciSI	GCTCTTC	1 cut(s)	644
PctI	GAATGC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	308, 812, 1088
PflMI	CCANNNNNTGG	1 cut(s)	845
PkrI	GCNGC	2 cut(s)	466, 1063
PleI	GAGTC	2 cut(s)	796, 871
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	2 cut(s)	796, 871
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	4 cut(s)	496, 535, 831, 1031
PspGI	CCWGG	4 cut(s)	496, 535, 831, 1031
PspN4I	GGNNCC	5 cut(s)	75, 144, 484, 637, 837
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	2 cut(s)	75, 88
RsaNI	GTAC	2 cut(s)	74, 87
RseI	CAYNNNNRTG	1 cut(s)	644
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	8 cut(s)	156, 225, 279, 690, 906, 936, 954, 1115
SatI	GCNGC	2 cut(s)	465, 1062
Sau3AI	GATC	4 cut(s)	6, 457, 532, 722
SchI	GAGTC	2 cut(s)	797, 871
ScrFI	CCNGG	6 cut(s)	65, 498, 537, 833, 1033, 1056
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	1 cut(s)	999
SfcI	CTRYAG	1 cut(s)	504
SfoI	GGCGCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
Sse9I	AATT	8 cut(s)	14, 558, 851, 865, 984, 1021, 1111, 1126
SsiI	CCGC	3 cut(s)	442, 606, 1135
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	1038
StyD4I	CCNGG	6 cut(s)	63, 496, 535, 831, 1031, 1054
TaaI	ACNGT	2 cut(s)	872, 1003
TaiI	ACGT	3 cut(s)	231, 375, 934
TaqI	TCGA	3 cut(s)	162, 576, 810
TasI	AATT	8 cut(s)	14, 558, 851, 865, 984, 1021, 1111, 1126
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	308, 812, 1088
Tru1I	TTAA	8 cut(s)	156, 225, 279, 690, 906, 936, 954, 1115
Tru9I	TTAA	8 cut(s)	156, 225, 279, 690, 906, 936, 954, 1115
TscAI	CASTG	2 cut(s)	592, 1006
TseFI	GTSAC	2 cut(s)	56, 231
TseI	GCWGC	2 cut(s)	464, 1061
Tsp45I	GTSAC	2 cut(s)	56, 231
TspDTI	ATGAA	8 cut(s)	300, 318, 366, 662, 708, 773, 878, 890
TspGWI	ACGGA	3 cut(s)	44, 92, 668
TspRI	CASTG	2 cut(s)	592, 1006
Van91I	CCANNNNNTGG	1 cut(s)	845
Vha464I	CTTAAG	1 cut(s)	935
XapI	RAATTY	3 cut(s)	558, 851, 1111
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	1038
ZraI	GACGTC	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.