Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Reverse (-)

8015406 .. 8021535

Gene Structure 6130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCAAGGGACAAAGAGAATGCCTGGAACAGCTGTCACAAAATCTGTTGTTGCTAATGAGCCTGGGGGTAGGAAGAGGGAGGAAATTTTTGTGGACATAATTGAGAAGATCAGTGTTACTTTCAGCTCTAGCGGGTACATTTTGACTTCTGAGATTGATGGTACCATTCAAATGAAGAGCTATCTCACTGGTAATCCAGAAATCCGATTAGCTCTTAATGAGGACCTCGGCATTGGAAGAGGTGGAACATCGGCGTATGACTATAGGAGTTCATTTGGGTCGGGCGCAGTGATACTTGATGACTGCAATTTTCATGAATCTGTGCGTCTTGATAATTTTGATGTAGACAAAACTCTTACTCTGGTACCCCCAGATGGCGAGTTTCCTGTCATGAACTACCGTATGACTCAGGAGTTCAAGCCTCCTTTTCGTATTAATGCTCTGATTGAAGAAGCAGGATCTCTTAAGGCTGAAGTGATTCTGAAACTATATGCTGAATTCCCATCAAACATTACTGCAAACACCATTTCTGTACAAATGCCACTACCTAAATATACTATGAGAGCCAGTTTTGAGTTGGAACCAGGAGCAGTTGGACAAACAACAGATTTCAAGGAAGCAAACAAGAGACTTGAATGGGGTTTAAAGAAGATTGTTGGTGGATCCGAACATACCCTACGTGCCAGGCTGACATTTTCACAGGAATTTCATGGAAATATCACAAAAGAAGCTGGTCCAGTTAGCATGACGTTCACGATACCCATGTATAACTCTTCAAAACTTCAGGTAAAATACTTGCAGATAGCAAAGAAGTCTGGAACTTATAATCCATATCGGTGGGTAAGATATGTTACTCTCGCCAATTCATACGTTGCTCGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

294

Amino Acids

32.81

Weight (kDa)

8.74

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	25 - 294	5.2e-75	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
Acc65I	GGTACC	2 cut(s)	161, 364
AccB1I	GGYRCC	2 cut(s)	161, 364
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	3 cut(s)	466, 657, 670
AcsI	RAATTY	3 cut(s)	84, 497, 704
AcuI	CTGAAG	2 cut(s)	492, 767
AfaI	GTAC	4 cut(s)	137, 163, 366, 534
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	6 cut(s)	170, 418, 449, 613, 635, 777
AjnI	CCWGG	4 cut(s)	22, 61, 583, 683
AloI	GAACNNNNNNTCC	2 cut(s)	811, 843
AluBI	AGCT	5 cut(s)	32, 126, 180, 212, 731
AluI	AGCT	5 cut(s)	32, 126, 180, 212, 731
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	3 cut(s)	466, 657, 670
ApoI	RAATTY	3 cut(s)	84, 497, 704
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	477
Asp718I	GGTACC	2 cut(s)	161, 364
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	223, 734
AvaII	GGWCC	2 cut(s)	223, 734
BaeI	ACNNNNGTAYC	4 cut(s)	348, 381, 749, 782
BamHI	GGATCC	1 cut(s)	662
BanI	GGYRCC	2 cut(s)	161, 364
BccI	CCATC	3 cut(s)	152, 368, 511
BciT130I	CCWGG	4 cut(s)	24, 63, 585, 685
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	262
BfrI	CTTAAG	1 cut(s)	464
Bme1390I	CCNGG	4 cut(s)	24, 63, 585, 685
Bme18I	GGWCC	2 cut(s)	223, 734
BmgT120I	GGNCC	2 cut(s)	223, 734
BmiI	GGNNCC	4 cut(s)	163, 366, 582, 664
BmrFI	CCNGG	4 cut(s)	24, 63, 585, 685
BsaAI	YACGTR	1 cut(s)	680
BsaJI	CCNNGG	2 cut(s)	62, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	3 cut(s)	193, 567, 737
BseBI	CCWGG	4 cut(s)	24, 63, 585, 685
BseDI	CCNNGG	2 cut(s)	62, 226
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	2 cut(s)	141, 422
BseNI	ACTGG	3 cut(s)	193, 567, 737
BshNI	GGYRCC	2 cut(s)	161, 364
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	108, 458, 662
BspACI	CCGC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	142, 421
BspHI	TCATGA	2 cut(s)	313, 390
BspLI	GGNNCC	4 cut(s)	163, 366, 582, 664
BspPI	GGATC	3 cut(s)	466, 657, 670
BspQI	GCTCTTC	1 cut(s)	170
BspT107I	GGYRCC	2 cut(s)	161, 364
BspTI	CTTAAG	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	193, 567, 737
BssECI	CCNNGG	2 cut(s)	62, 226
BssMI	GATC	3 cut(s)	108, 458, 662
Bst2UI	CCWGG	4 cut(s)	24, 63, 585, 685
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	4 cut(s)	68, 170, 232, 778
BstAFI	CTTAAG	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	680
BstDEI	CTNAG	2 cut(s)	150, 408
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	3 cut(s)	111, 461, 665
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	3 cut(s)	108, 458, 662
BstNI	CCWGG	4 cut(s)	24, 63, 585, 685
BstSCI	CCNGG	4 cut(s)	22, 61, 583, 683
BstSFI	CTRYAG	1 cut(s)	262
BstX2I	RGATCY	2 cut(s)	458, 662
BstXI	CCANNNNNNTGG	1 cut(s)	837
BstYI	RGATCY	2 cut(s)	458, 662
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	3 cut(s)	118, 186, 294
CciI	TCATGA	2 cut(s)	313, 390
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	223, 734
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	4 cut(s)	136, 162, 365, 533
CviAII	CATG	5 cut(s)	314, 391, 710, 745, 763
CviQI	GTAC	4 cut(s)	136, 162, 365, 533
DdeI	CTNAG	2 cut(s)	150, 408
DpnI	GATC	3 cut(s)	110, 460, 664
DpnII	GATC	3 cut(s)	108, 458, 662
DraI	TTTAAA	1 cut(s)	645
Eam1104I	CTCTTC	4 cut(s)	68, 170, 232, 778
EarI	CTCTTC	4 cut(s)	68, 170, 232, 778
Eco47I	GGWCC	2 cut(s)	223, 734
Eco57I	CTGAAG	2 cut(s)	492, 767
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	4 cut(s)	22, 61, 583, 683
FaeI	CATG	5 cut(s)	317, 394, 713, 748, 766
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	5 cut(s)	313, 390, 709, 744, 762
FauI	CCCGC	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	286
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	5 cut(s)	317, 394, 713, 748, 766
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	317, 406, 478
Hpy166II	GTNNAC	3 cut(s)	94, 346, 753
Hpy188I	TCNGA	5 cut(s)	151, 206, 444, 483, 667
Hpy188III	TCNNGA	7 cut(s)	197, 314, 329, 391, 410, 754, 816
Hpy8I	GTNNAC	3 cut(s)	94, 346, 753
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	3 cut(s)	679, 749, 870
HpyCH4V	TGCA	4 cut(s)	4, 306, 518, 799
HpyF3I	CTNAG	2 cut(s)	150, 408
HpySE526I	ACGT	3 cut(s)	679, 749, 870
Hsp92II	CATG	5 cut(s)	317, 394, 713, 748, 766
HspAI	GCGC	1 cut(s)	285
KpnI	GGTACC	2 cut(s)	165, 368
Kzo9I	GATC	3 cut(s)	108, 458, 662
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	587
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	3 cut(s)	679, 749, 870
MaeIII	GTNAC	3 cut(s)	34, 115, 850
MalI	GATC	3 cut(s)	110, 460, 664
MboI	GATC	3 cut(s)	108, 458, 662
MboII	GAAGA	7 cut(s)	85, 118, 187, 249, 461, 661, 765
MflI	RGATCY	2 cut(s)	458, 662
MluCI	AATT	7 cut(s)	84, 99, 307, 334, 497, 704, 862
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	2 cut(s)	558, 574
MnlI	CCTC	6 cut(s)	69, 73, 214, 233, 236, 432
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	4 cut(s)	216, 435, 465, 644
MslI	CAYNNNNRTG	2 cut(s)	170, 835
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	464
MspR9I	CCNGG	4 cut(s)	24, 63, 585, 685
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	4 cut(s)	24, 63, 585, 685
NdeII	GATC	3 cut(s)	108, 458, 662
NlaIII	CATG	5 cut(s)	317, 394, 713, 748, 766
NlaIV	GGNNCC	4 cut(s)	163, 366, 582, 664
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	34
PagI	TCATGA	2 cut(s)	313, 390
PciSI	GCTCTTC	1 cut(s)	170
PctI	GAATGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	317, 478
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	680
PpuMI	RGGWCCY	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	825
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	4 cut(s)	22, 61, 583, 683
PspGI	CCWGG	4 cut(s)	22, 61, 583, 683
PspN4I	GGNNCC	4 cut(s)	163, 366, 582, 664
PspPI	GGNCC	2 cut(s)	223, 734
PspPPI	RGGWCCY	1 cut(s)	223
PsrI	GAACNNNNNNTAC	2 cut(s)	660, 692
PsuI	RGATCY	2 cut(s)	458, 662
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	4 cut(s)	137, 163, 366, 534
RsaNI	GTAC	4 cut(s)	136, 162, 365, 533
RseI	CAYNNNNRTG	2 cut(s)	170, 835
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	4 cut(s)	216, 435, 465, 644
Sau3AI	GATC	3 cut(s)	108, 458, 662
Sau96I	GGNCC	2 cut(s)	223, 734
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	4 cut(s)	24, 63, 585, 685
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	223, 734
SmiMI	CAYNNNNRTG	2 cut(s)	170, 835
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	7 cut(s)	84, 99, 307, 334, 497, 704, 862
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	4 cut(s)	22, 61, 583, 683
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	3 cut(s)	682, 752, 873
TasI	AATT	7 cut(s)	84, 99, 307, 334, 497, 704, 862
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	2 cut(s)	317, 478
Tru1I	TTAA	4 cut(s)	216, 435, 465, 644
Tru9I	TTAA	4 cut(s)	216, 435, 465, 644
TscAI	CASTG	3 cut(s)	118, 193, 294
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	7 cut(s)	188, 261, 302, 330, 407, 698, 855
TspRI	CASTG	3 cut(s)	118, 193, 294
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	223, 734
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	3 cut(s)	84, 497, 704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.