Rh6AG420300

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
61361884 .. 61365669
3786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG420300.1

Sequence Viewer

Length: 1350 bp
ATGATTTCTCAGTTCTTTGTTCTATCGCAGAGAGGCGATAATATCGTCTTCCGCGACTATCGCGGTGAAGTAGCGAAGGGCAGTGCGGAGATTTTCTTTCGCAAGGTGAAGTTTTGGAAGGAGGATGGAGAAGGGGAAGCGCCACCTGTCTTTAATGTGGATGGTGTGAACTATTTTCACGTGAAGGAAGCTGGACTGTTCTTTGTTGCGACGACGAGAGTGAATGTGTCGCCTTCTCTGGTTTTGGAACTTTTGAGAAGGATTGCGAGAGTCATTAAAGATTACCTTGGGGTTCTTAGTGAAGAATCGTTGCGAAAAAACTTTGTGCTTGTGTATGAGTTGCTGGACCAAGTTATTGATTTTGGTTTTGTGCAAACGACTTCAACTGAGGTTTTGAAGTCGTATGTGTTCAATGAGCCGATTGCTGTTGCTGCTGACCATTTACAACCCCTTGGTCCTGCCGCGATTTTTATGGCCAAAAGAATGCCTATGACAACTATCACAAAATCTGTTGTAGCTAATGAGCGTGGGGGTAGGAAGAGAGAGGAGATTTTTGTGGACATAATTGAGAATCTGAGTGTCACATTCAGTTCCAGTGGGTATATACTTACTTCTGAAATTGATGGTACTATTCAATTGAAGAGTTATCTGACAGGCAATCCAGACATTCGACTTGCTCTTAATGAGGAAGTGAGTATAGGAAGAGATGGAGGGTCAACTTATGATTATGGTTGTTCGCTTGGATCAGGGCCTGTCATACTAGATGATTGTAACTTCCATGAATCTGTACGTCTTAACAATTTTGACGTTGACAGAACACTGACACTGGGTTCAACAGATGGTGAATTTCCTATCATGAATTACCGCATAACTCAGGAATTCAAGCCTCCCTTTCGTATTAATGCATTAGTTGAAGAATCAGGGCGCCTTAAGGCTGAAGTGACTATCAAAGTGCATGCTGAATTCCCATCGAGCATCATTGCAGATAAAATTATGGTGCAGCTACCGGTGCCACCGTATACAACCAAGGTTAGTTTTGAGTTGGAACCTGGAACAGTTGGAAACACAACCGATTTCAAGGAAGCAAACAAGAGAATTGAATGGGGTTTAAAGAAGATCGTTGGTGGATCTGAACATACTTTACATGCAAAGCTGACATTTGCACAGGAATTACGTGGAAATATTACCAAGGAAGCTGGACCTGTGAGCATGACATTCACAATACCCATGTACAATGCTTCAAGGCTTCAGGTAAAATACTTGCATATAACAAAGAAGTCGAAGAGCTATAATCCATATAGATGGGTGAGATACGTCACACAGTCAAATTCCTATGTTGCTCGGTTATAA

Protein Analysis

449

Amino Acids

50.5

Weight (kDa)

7.07

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 180 - 449 3.8e-73 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1348
AccB1I GGYRCC 2 cut(s) 924, 1009
AccI GTMKAC 1 cut(s) 1019
AccII CGCG 3 cut(s) 54, 63, 464
AciI CCGC 5 cut(s) 52, 63, 86, 462, 865
AclWI GGATC 2 cut(s) 751, 1135
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 4 cut(s) 845, 878, 962, 1327
AcuI CTGAAG 2 cut(s) 957, 1232
AcvI CACGTG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 925
AfaI GTAC 3 cut(s) 628, 789, 1232
AflII CTTAAG 1 cut(s) 929
AgeI ACCGGT 1 cut(s) 1006
AjnI CCWGG 1 cut(s) 1048
AluBI AGCT 6 cut(s) 191, 518, 1003, 1153, 1196, 1287
AluI AGCT 6 cut(s) 191, 518, 1003, 1153, 1196, 1287
AlwI GGATC 2 cut(s) 751, 1135
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 2 cut(s) 474, 749
ApeKI GCWGC 2 cut(s) 431, 1000
ApoI RAATTY 4 cut(s) 845, 878, 962, 1327
AseI ATTAAT 1 cut(s) 900
AsiGI ACCGGT 1 cut(s) 1006
AspLEI GCGC 2 cut(s) 142, 927
AspS9I GGNCC 4 cut(s) 346, 455, 749, 1199
AsuHPI GGTGA 4 cut(s) 77, 118, 854, 1318
AvaII GGWCC 3 cut(s) 346, 455, 1199
BalI TGGCCA 1 cut(s) 476
BanI GGYRCC 2 cut(s) 924, 1009
BbrPI CACGTG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 418, 1012
BccI CCATC 7 cut(s) 119, 155, 617, 701, 833, 976, 1296
BciT130I CCWGG 1 cut(s) 1050
BfaI CTAG 1 cut(s) 761
BfoI RGCGCY 2 cut(s) 143, 928
BfrI CTTAAG 1 cut(s) 929
BisI GCNGC 3 cut(s) 432, 462, 1001
BlsI GCNGC 3 cut(s) 433, 463, 1002
Bme1390I CCNGG 1 cut(s) 1050
Bme18I GGWCC 3 cut(s) 346, 455, 1199
BmgT120I GGNCC 4 cut(s) 346, 455, 749, 1199
BmiI GGNNCC 3 cut(s) 926, 1011, 1047
BmrFI CCNGG 1 cut(s) 1050
BmrI ACTGGG 1 cut(s) 836
BmsI GCATC 1 cut(s) 984
BmuI ACTGGG 1 cut(s) 836
BpiI GAAGAC 1 cut(s) 40
BsaAI YACGTR 2 cut(s) 181, 1175
BsaHI GRCGYC 1 cut(s) 925
BsaJI CCNNGG 4 cut(s) 286, 451, 1026, 1188
BsaWI WCCGGW 1 cut(s) 1006
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 2 cut(s) 594, 831
Bse3DI GCAATG 1 cut(s) 978
BseBI CCWGG 1 cut(s) 1050
BseDI CCNNGG 4 cut(s) 286, 451, 1026, 1188
BseGI GGATG 2 cut(s) 130, 166
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 4 cut(s) 23, 378, 566, 887
BseNI ACTGG 2 cut(s) 594, 831
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 2 cut(s) 418, 1012
BsgI GTGCAG 1 cut(s) 1019
Bsh1236I CGCG 3 cut(s) 54, 63, 464
BshFI GGCC 2 cut(s) 476, 751
BshNI GGYRCC 2 cut(s) 924, 1009
BshTI ACCGGT 1 cut(s) 1006
BsiSI CCGG 1 cut(s) 1007
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 2 cut(s) 476, 751
Bsp1407I TGTACA 1 cut(s) 1230
Bsp143I GATC 3 cut(s) 743, 1116, 1127
BspACI CCGC 5 cut(s) 52, 63, 86, 462, 865
BspANI GGCC 2 cut(s) 476, 751
BspCNI CTCAG 4 cut(s) 22, 379, 567, 886
BspFNI CGCG 3 cut(s) 54, 63, 464
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 3 cut(s) 926, 1011, 1047
BspPI GGATC 2 cut(s) 751, 1135
BspQI GCTCTTC 1 cut(s) 1277
BspT107I GGYRCC 2 cut(s) 924, 1009
BspTI CTTAAG 1 cut(s) 929
BsrDI GCAATG 1 cut(s) 978
BsrFI RCCGGY 1 cut(s) 1006
BsrGI TGTACA 1 cut(s) 1230
BsrI ACTGG 2 cut(s) 594, 831
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 4 cut(s) 286, 451, 1026, 1188
BssMI GATC 3 cut(s) 743, 1116, 1127
BssNAI GTATAC 1 cut(s) 1020
BssNI GRCGYC 1 cut(s) 925
BssT1I CCWWGG 4 cut(s) 286, 451, 1026, 1188
Bst1107I GTATAC 1 cut(s) 1020
Bst2UI CCWGG 1 cut(s) 1050
Bst4CI ACNGT 4 cut(s) 198, 1017, 1057, 1323
Bst6I CTCTTC 4 cut(s) 533, 635, 697, 1277
BstACI GRCGYC 1 cut(s) 925
BstAFI CTTAAG 1 cut(s) 929
BstAUI TGTACA 1 cut(s) 1230
BstBAI YACGTR 2 cut(s) 181, 1175
BstC8I GCNNGC 1 cut(s) 957
BstDEI CTNAG 5 cut(s) 9, 296, 387, 575, 873
BstF5I GGATG 2 cut(s) 130, 166
BstFNI CGCG 3 cut(s) 54, 63, 464
BstH2I RGCGCY 2 cut(s) 143, 928
BstHHI GCGC 2 cut(s) 142, 927
BstKTI GATC 3 cut(s) 746, 1119, 1130
BstMBI GATC 3 cut(s) 743, 1116, 1127
BstMWI GCNNNNNNNGC 3 cut(s) 60, 431, 1009
BstNI CCWGG 1 cut(s) 1050
BstNSI RCATGY 2 cut(s) 959, 1148
BstSCI CCNGG 1 cut(s) 1048
BstUI CGCG 3 cut(s) 54, 63, 464
BstV1I GCAGC 2 cut(s) 418, 1012
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 1127
BstXI CCANNNNNNTGG 1 cut(s) 1302
BstYI RGATCY 1 cut(s) 1127
BstZ17I GTATAC 1 cut(s) 1020
BsuRI GGCC 2 cut(s) 476, 751
BtsCI GGATG 2 cut(s) 130, 166
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 4 cut(s) 88, 601, 818, 824
Cac8I GCNNGC 1 cut(s) 957
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 1 cut(s) 855
CfoI GCGC 2 cut(s) 142, 927
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 4 cut(s) 346, 455, 749, 1199
Csp6I GTAC 3 cut(s) 627, 788, 1231
CspAI ACCGGT 1 cut(s) 1006
CviAII CATG 6 cut(s) 779, 856, 956, 1145, 1210, 1228
CviQI GTAC 3 cut(s) 627, 788, 1231
DdeI CTNAG 5 cut(s) 9, 296, 387, 575, 873
DinI GGCGCC 1 cut(s) 926
DpnI GATC 3 cut(s) 745, 1118, 1129
DpnII GATC 3 cut(s) 743, 1116, 1127
DraI TTTAAA 1 cut(s) 1110
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 4 cut(s) 533, 635, 697, 1277
EarI CTCTTC 4 cut(s) 533, 635, 697, 1277
Eco130I CCWWGG 4 cut(s) 286, 451, 1026, 1188
Eco47I GGWCC 3 cut(s) 346, 455, 1199
Eco57I CTGAAG 2 cut(s) 957, 1232
Eco72I CACGTG 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 749
EcoRI GAATTC 2 cut(s) 878, 962
EcoRII CCWGG 1 cut(s) 1048
EcoT14I CCWWGG 4 cut(s) 286, 451, 1026, 1188
EcoT22I ATGCAT 1 cut(s) 907
EgeI GGCGCC 1 cut(s) 926
EheI GGCGCC 1 cut(s) 926
ErhI CCWWGG 4 cut(s) 286, 451, 1026, 1188
FaeI CATG 6 cut(s) 782, 859, 959, 1148, 1213, 1231
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 875, 907
FatI CATG 6 cut(s) 778, 855, 955, 1144, 1209, 1227
FblI GTMKAC 1 cut(s) 1019
Fnu4HI GCNGC 3 cut(s) 432, 462, 1001
FokI GGATG 2 cut(s) 137, 173
Fsp4HI GCNGC 3 cut(s) 432, 462, 1001
FspBI CTAG 1 cut(s) 761
GlaI GCGC 2 cut(s) 141, 926
GluI GCNGC 3 cut(s) 432, 462, 1001
HaeII RGCGCY 2 cut(s) 143, 928
HaeIII GGCC 2 cut(s) 476, 751
HapII CCGG 1 cut(s) 1007
HhaI GCGC 2 cut(s) 142, 927
Hin1I GRCGYC 1 cut(s) 925
Hin1II CATG 6 cut(s) 782, 859, 959, 1148, 1213, 1231
Hin6I GCGC 2 cut(s) 140, 925
HinP1I GCGC 2 cut(s) 140, 925
HincII GTYRAC 2 cut(s) 717, 811
HindII GTYRAC 2 cut(s) 717, 811
HinfI GANTC 5 cut(s) 270, 305, 571, 782, 917
HpaII CCGG 1 cut(s) 1007
HphI GGTGA 4 cut(s) 77, 118, 854, 1318
Hpy166II GTNNAC 5 cut(s) 169, 559, 717, 811, 1020
Hpy188I TCNGA 4 cut(s) 576, 616, 651, 1132
Hpy188III TCNNGA 3 cut(s) 662, 856, 875
Hpy8I GTNNAC 5 cut(s) 169, 559, 717, 811, 1020
Hpy99I CGWCG 2 cut(s) 214, 217
HpyAV CCTTC 6 cut(s) 70, 112, 125, 178, 243, 252
HpyCH4III ACNGT 4 cut(s) 198, 1017, 1057, 1323
HpyCH4IV ACGT 5 cut(s) 180, 790, 807, 1174, 1314
HpyCH4V TGCA 8 cut(s) 373, 905, 955, 983, 1000, 1148, 1163, 1264
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 431, 1009
HpyF3I CTNAG 5 cut(s) 9, 296, 387, 575, 873
HpySE526I ACGT 5 cut(s) 180, 790, 807, 1174, 1314
Hsp92I GRCGYC 1 cut(s) 925
Hsp92II CATG 6 cut(s) 782, 859, 959, 1148, 1213, 1231
HspAI GCGC 2 cut(s) 140, 925
KasI GGCGCC 1 cut(s) 924
Kzo9I GATC 3 cut(s) 743, 1116, 1127
LguI GCTCTTC 1 cut(s) 1277
Lsp1109I GCAGC 2 cut(s) 418, 1012
LweI GCATC 1 cut(s) 984
MaeI CTAG 1 cut(s) 761
MaeII ACGT 5 cut(s) 180, 790, 807, 1174, 1314
MaeIII GTNAC 4 cut(s) 580, 770, 940, 1315
MalI GATC 3 cut(s) 745, 1118, 1129
MboI GATC 3 cut(s) 743, 1116, 1127
MboII GAAGA 8 cut(s) 40, 314, 550, 652, 714, 926, 1126, 1294
MfeI CAATTG 1 cut(s) 635
MflI RGATCY 1 cut(s) 1127
MlsI TGGCCA 1 cut(s) 476
MluNI TGGCCA 1 cut(s) 476
Mly113I GGCGCC 1 cut(s) 925
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 1023, 1039
MnlI CCTC 7 cut(s) 26, 115, 382, 538, 679, 704, 897
Mox20I TGGCCA 1 cut(s) 476
Mph1103I ATGCAT 1 cut(s) 907
MscI TGGCCA 1 cut(s) 476
MseI TTAA 7 cut(s) 153, 276, 681, 795, 900, 930, 1109
MslI CAYNNNNRTG 1 cut(s) 1300
Msp20I TGGCCA 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 1 cut(s) 1007
MspR9I CCNGG 1 cut(s) 1050
MunI CAATTG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 1 cut(s) 1050
MvnI CGCG 3 cut(s) 54, 63, 464
MwoI GCNNNNNNNGC 3 cut(s) 60, 431, 1009
NarI GGCGCC 1 cut(s) 925
NdeII GATC 3 cut(s) 743, 1116, 1127
NlaIII CATG 6 cut(s) 782, 859, 959, 1148, 1213, 1231
NlaIV GGNNCC 3 cut(s) 926, 1011, 1047
NmuCI GTSAC 3 cut(s) 580, 940, 1315
NsiI ATGCAT 1 cut(s) 907
NspI RCATGY 2 cut(s) 959, 1148
PaeI GCATGC 1 cut(s) 959
PagI TCATGA 1 cut(s) 855
PciSI GCTCTTC 1 cut(s) 1277
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 4 cut(s) 305, 571, 782, 917
PinAI ACCGGT 1 cut(s) 1006
PkrI GCNGC 3 cut(s) 433, 463, 1002
PleI GAGTC 1 cut(s) 278
PluTI GGCGCC 1 cut(s) 928
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 1 cut(s) 278
Ppu21I YACGTR 2 cut(s) 181, 1175
PshBI ATTAAT 1 cut(s) 900
PsiI TTATAA 1 cut(s) 1348
Psp6I CCWGG 1 cut(s) 1048
PspCI CACGTG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 1048
PspN4I GGNNCC 3 cut(s) 926, 1011, 1047
PspPI GGNCC 4 cut(s) 346, 455, 749, 1199
PsrI GAACNNNNNNTAC 2 cut(s) 1125, 1157
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 1127
RsaI GTAC 3 cut(s) 628, 789, 1232
RsaNI GTAC 3 cut(s) 627, 788, 1231
RseI CAYNNNNRTG 1 cut(s) 1300
SapI GCTCTTC 1 cut(s) 1277
SaqAI TTAA 7 cut(s) 153, 276, 681, 795, 900, 930, 1109
SatI GCNGC 3 cut(s) 432, 462, 1001
Sau3AI GATC 3 cut(s) 743, 1116, 1127
Sau96I GGNCC 4 cut(s) 346, 455, 749, 1199
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 1050
SfaNI GCATC 1 cut(s) 984
SfoI GGCGCC 1 cut(s) 926
SinI GGWCC 3 cut(s) 346, 455, 1199
SmiMI CAYNNNNRTG 1 cut(s) 1300
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
SphI GCATGC 1 cut(s) 959
SsiI CCGC 5 cut(s) 52, 63, 86, 462, 865
SspDI GGCGCC 1 cut(s) 924
SspI AATATT 1 cut(s) 1183
SspMI CTAG 1 cut(s) 761
StyD4I CCNGG 1 cut(s) 1048
StyI CCWWGG 4 cut(s) 286, 451, 1026, 1188
TaaI ACNGT 4 cut(s) 198, 1017, 1057, 1323
TaiI ACGT 5 cut(s) 183, 793, 810, 1177, 1317
TaqI TCGA 3 cut(s) 670, 971, 1280
TatI WGTACW 1 cut(s) 1230
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 4 cut(s) 305, 571, 782, 917
Tru1I TTAA 7 cut(s) 153, 276, 681, 795, 900, 930, 1109
Tru9I TTAA 7 cut(s) 153, 276, 681, 795, 900, 930, 1109
TscAI CASTG 4 cut(s) 88, 601, 825, 831
TseFI GTSAC 3 cut(s) 580, 940, 1315
TseI GCWGC 2 cut(s) 431, 1000
Tsp45I GTSAC 3 cut(s) 580, 940, 1315
TspDTI ATGAA 2 cut(s) 795, 872
TspRI CASTG 4 cut(s) 88, 601, 825, 831
Vha464I CTTAAG 1 cut(s) 929
VpaK11BI GGWCC 3 cut(s) 346, 455, 1199
VspI ATTAAT 1 cut(s) 900
XapI RAATTY 4 cut(s) 845, 878, 962, 1327
XceI RCATGY 2 cut(s) 959, 1148
XmiI GTMKAC 1 cut(s) 1019
XspI CTAG 1 cut(s) 761
Zsp2I ATGCAT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.