pycom08g16880

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
16981009 .. 16987581
6573 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16880.10

Sequence Viewer

Length: 1356 bp
ATGATCTCGCAGTTCTTCCTGCTCTCGCAGCGTGGCGACAATATCGTCTTCCGCGACTATCGCGGTGAAGTGCCAAAAGGAAGCGCAGAGATATTTTTCCGGAAAGTGAAGTTTTGGAAAGAAGATGGGCAAGAGGAAGCACCCCCTGTCTTTAACGTGGATGGTGTCAACTACTTTCATGTGAAGGTTGTTGGACTATTGTTTGTCGCAACCACAAGAGCTAATGTATCACCATCTCTTGTCTTGGAACTTCTACAAAGAATTGCCCGTGTCATCAAAGATTATGTTGGGGTTCTCAATGAAGATTCTATAAGGAAGAATTTTGTGCTTGTGTACGAGTTGCTTGATGAAGTCATTGATTTTGGCTTTGTGCAAACAACATCAACTGAATTGTTGAAGTCTTATATATTTAATGAGCCAATTGTTCTCGAATCTGCGCGTTTATCATCTATTGGCCCTACTGGCCTTTTTATGCAAGGGACAAAGAGAATGCCTGGAACAGCTGTCACAAAATCAGTTGTTGCAAATGAGCCTGGTGGTAGGAAGAGGGAGGAAATTTTTGTGGATATAATCGAGAAGATTAGTGTGACTTTCAGCTCTAGTGGTTACATATTGACTTCTGAGATTGATGGAACCATTCAAATGAAAAGCTATCTCTCTGGAAATCCAGAAATCCGATTAGCCCTCAATGAGGATCTGGGCATAGGAAGAGGCGGAGGGTCGGGCTATGACTATAGGAGTTCATTTGGATCAGGAGCAGTGGTACTTGATGATTGCAATTTTCATGAATCTGTACGTCTTGATAATTTTGAAGTAGACAAAACTCTGACCCTGGTGCCCCCTGACGGTGAATTTCCTGTCATGAACTACCGTATGACTCAGGAGTTCAAGCCCCCTTTTCGTATTAATGCGTTGATTGAAGAAGCAGGAGCTCATAAGGCTGAAGTGATTCTGAAAATATATGCTGAGTTCCCCTCAAACATTACTTCCAACACAGTTGCTGTACAAATGCCGCTACCTAAATATACTATCAGAGCCAGTTTTGAGTTGGAACCAGGAGCAGTTGGACAAACAACAGACTTCAAGGATGCCAATAAGAGACTTGAGTGGGGATTAAAGAAGATTGTCGGTGGATCTGAACATACGCTACGTGCCAGACTCACATTTTCCCCTGAAGTACATGGAAACATAACAAAAGAATCTGGTCCAGTTAGCATGACATTTACAATACCTATGTATAATTCTTCAAGACTTCAGGTAAAGTACTTGCAGATAGCAAAGAAGTCTGGGACTTATAATCCATATAGGTGGGTAAGATATGTTACTCTCGCCAATTCATACGTTGCTCGGATATGA

Protein Analysis

452

Amino Acids

50.52

Weight (kDa)

7.0

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1296
AasI GACNNNNNNGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 835
AccI GTMKAC 1 cut(s) 816
AccII CGCG 3 cut(s) 54, 63, 439
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 4 cut(s) 52, 63, 714, 1013
AclWI GGATC 3 cut(s) 702, 757, 1141
AcsI RAATTY 3 cut(s) 319, 555, 851
AcuI CTGAAG 3 cut(s) 963, 1194, 1238
AfaI GTAC 6 cut(s) 335, 765, 795, 1005, 1179, 1265
AfiI CCNNNNNNNGG 2 cut(s) 691, 845
AgsI TTSAA 7 cut(s) 397, 641, 812, 889, 920, 1084, 1248
AjnI CCWGG 4 cut(s) 493, 532, 831, 1054
AluBI AGCT 5 cut(s) 221, 503, 597, 651, 932
AluI AGCT 5 cut(s) 221, 503, 597, 651, 932
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 1 cut(s) 1093
AlwI GGATC 3 cut(s) 702, 757, 1141
AlwNI CAGNNNCTG 1 cut(s) 1001
Aor13HI TCCGGA 1 cut(s) 99
AoxI GGCC 2 cut(s) 454, 463
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 319, 555, 851
AseI ATTAAT 1 cut(s) 906
Asp700I GAANNNNTTC 1 cut(s) 948
AspLEI GCGC 2 cut(s) 86, 439
AspS9I GGNCC 2 cut(s) 455, 1205
AsuHPI GGTGA 3 cut(s) 77, 222, 860
AvaII GGWCC 1 cut(s) 1205
BaeGI GKGCMC 1 cut(s) 840
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 1 cut(s) 934
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 1 cut(s) 40
BccI CCATC 4 cut(s) 119, 155, 241, 623
BciT130I CCWGG 4 cut(s) 495, 534, 833, 1056
BcoDI GTCTC 1 cut(s) 1093
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 733
BglI GCCNNNNNGGC 1 cut(s) 462
BisI GCNGC 2 cut(s) 29, 1013
BlsI GCNGC 2 cut(s) 30, 1014
BmcAI AGTACT 1 cut(s) 1265
Bme1390I CCNGG 4 cut(s) 495, 534, 833, 1056
Bme18I GGWCC 1 cut(s) 1205
BmgT120I GGNCC 2 cut(s) 455, 1205
BmiI GGNNCC 3 cut(s) 634, 837, 1053
BmrFI CCNGG 4 cut(s) 495, 534, 833, 1056
BmsI GCATC 1 cut(s) 1078
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpuEI CTTGAG 1 cut(s) 1124
BsaAI YACGTR 1 cut(s) 1151
BsaJI CCNNGG 1 cut(s) 831
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 691, 845
Bse1I ACTGG 3 cut(s) 466, 1038, 1208
BseAI TCCGGA 1 cut(s) 99
BseBI CCWGG 4 cut(s) 495, 534, 833, 1056
BseDI CCNNGG 1 cut(s) 831
BseGI GGATG 2 cut(s) 166, 1093
BseLI CCNNNNNNNGG 2 cut(s) 691, 845
BseMII CTCAG 3 cut(s) 612, 893, 957
BseNI ACTGG 3 cut(s) 466, 1038, 1208
BseSI GKGCMC 1 cut(s) 840
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 3 cut(s) 54, 63, 439
BshFI GGCC 2 cut(s) 456, 465
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 2 cut(s) 493, 1303
BslI CCNNNNNNNGG 2 cut(s) 691, 845
BsmAI GTCTC 1 cut(s) 1093
BsmFI GGGAC 2 cut(s) 493, 1303
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 2 cut(s) 456, 465
Bsp1286I GDGCHC 2 cut(s) 840, 934
Bsp13I TCCGGA 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 1003
Bsp143I GATC 4 cut(s) 3, 694, 749, 1133
BspACI CCGC 4 cut(s) 52, 63, 714, 1013
BspANI GGCC 2 cut(s) 456, 465
BspCNI CTCAG 3 cut(s) 613, 892, 958
BspEI TCCGGA 1 cut(s) 99
BspFNI CGCG 3 cut(s) 54, 63, 439
BspHI TCATGA 2 cut(s) 784, 861
BspLI GGNNCC 3 cut(s) 634, 837, 1053
BspPI GGATC 3 cut(s) 702, 757, 1141
BspT107I GGYRCC 1 cut(s) 835
BsrGI TGTACA 1 cut(s) 1003
BsrI ACTGG 3 cut(s) 466, 1038, 1208
BssECI CCNNGG 1 cut(s) 831
BssMI GATC 4 cut(s) 3, 694, 749, 1133
Bst2UI CCWGG 4 cut(s) 495, 534, 833, 1056
Bst4CI ACNGT 3 cut(s) 848, 872, 997
Bst6I CTCTTC 2 cut(s) 539, 703
BstAUI TGTACA 1 cut(s) 1003
BstBAI YACGTR 1 cut(s) 1151
BstDEI CTNAG 3 cut(s) 621, 879, 966
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 2 cut(s) 166, 1093
BstFNI CGCG 3 cut(s) 54, 63, 439
BstHHI GCGC 2 cut(s) 86, 439
BstKTI GATC 4 cut(s) 6, 697, 752, 1136
BstMAI GTCTC 1 cut(s) 1093
BstMBI GATC 4 cut(s) 3, 694, 749, 1133
BstMWI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
BstNI CCWGG 4 cut(s) 495, 534, 833, 1056
BstSCI CCNGG 4 cut(s) 493, 532, 831, 1054
BstSFI CTRYAG 1 cut(s) 733
BstSLI GKGCMC 1 cut(s) 840
BstUI CGCG 3 cut(s) 54, 63, 439
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 694, 1133
BstXI CCANNNNNNTGG 1 cut(s) 1308
BstYI RGATCY 2 cut(s) 694, 1133
BsuRI GGCC 2 cut(s) 456, 465
BtsCI GGATG 2 cut(s) 166, 1093
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 1 cut(s) 765
CaiI CAGNNNCTG 1 cut(s) 1001
CciI TCATGA 2 cut(s) 784, 861
CfoI GCGC 2 cut(s) 86, 439
Cfr13I GGNCC 2 cut(s) 455, 1205
Csp6I GTAC 6 cut(s) 334, 764, 794, 1004, 1178, 1264
CviAII CATG 5 cut(s) 179, 785, 862, 1181, 1216
CviQI GTAC 6 cut(s) 334, 764, 794, 1004, 1178, 1264
DdeI CTNAG 3 cut(s) 621, 879, 966
DpnI GATC 4 cut(s) 5, 696, 751, 1135
DpnII GATC 4 cut(s) 3, 694, 749, 1133
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 539, 703
EarI CTCTTC 2 cut(s) 539, 703
EciI GGCGGA 1 cut(s) 729
Ecl136II GAGCTC 1 cut(s) 932
Eco24I GRGCYC 1 cut(s) 934
Eco47I GGWCC 1 cut(s) 1205
Eco53kI GAGCTC 1 cut(s) 932
Eco57I CTGAAG 3 cut(s) 963, 1194, 1238
EcoICRI GAGCTC 1 cut(s) 932
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoRII CCWGG 4 cut(s) 493, 532, 831, 1054
EcoT38I GRGCYC 1 cut(s) 934
FaeI CATG 5 cut(s) 182, 788, 865, 1184, 1219
FaqI GGGAC 2 cut(s) 493, 1303
FatI CATG 5 cut(s) 178, 784, 861, 1180, 1215
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 2 cut(s) 29, 1013
FokI GGATG 2 cut(s) 173, 1100
FriOI GRGCYC 1 cut(s) 934
Fsp4HI GCNGC 2 cut(s) 29, 1013
FspBI CTAG 1 cut(s) 600
GlaI GCGC 2 cut(s) 85, 438
GluI GCNGC 2 cut(s) 29, 1013
HaeIII GGCC 2 cut(s) 456, 465
HapII CCGG 1 cut(s) 100
HhaI GCGC 2 cut(s) 86, 439
Hin1II CATG 5 cut(s) 182, 788, 865, 1184, 1219
Hin6I GCGC 2 cut(s) 84, 437
HinP1I GCGC 2 cut(s) 84, 437
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 7 cut(s) 305, 431, 788, 877, 949, 1158, 1199
HpaII CCGG 1 cut(s) 100
HphI GGTGA 3 cut(s) 77, 222, 860
Hpy166II GTNNAC 3 cut(s) 169, 334, 817
Hpy188I TCNGA 7 cut(s) 622, 677, 828, 954, 1034, 1138, 1350
Hpy8I GTNNAC 3 cut(s) 169, 334, 817
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 848, 872, 997
HpyCH4IV ACGT 4 cut(s) 156, 796, 1150, 1341
HpyCH4V TGCA 5 cut(s) 373, 475, 524, 777, 1270
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
HpyF3I CTNAG 3 cut(s) 621, 879, 966
HpySE526I ACGT 4 cut(s) 156, 796, 1150, 1341
Hsp92II CATG 5 cut(s) 182, 788, 865, 1184, 1219
HspAI GCGC 2 cut(s) 84, 437
Kpn2I TCCGGA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 3, 694, 749, 1133
LmnI GCTCC 3 cut(s) 755, 929, 1058
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 1078
MaeI CTAG 1 cut(s) 600
MaeII ACGT 4 cut(s) 156, 796, 1150, 1341
MaeIII GTNAC 4 cut(s) 505, 586, 605, 1321
MalI GATC 4 cut(s) 5, 696, 751, 1135
MboI GATC 4 cut(s) 3, 694, 749, 1133
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 2 cut(s) 694, 1133
MhlI GDGCHC 2 cut(s) 840, 934
MlyI GAGTC 2 cut(s) 871, 1152
MmeI TCCRAC 4 cut(s) 172, 1014, 1029, 1045
MnlI CCTC 8 cut(s) 127, 540, 544, 685, 695, 704, 710, 985
MroI TCCGGA 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 4 cut(s) 153, 411, 906, 1115
MslI CAYNNNNRTG 2 cut(s) 641, 1306
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 4 cut(s) 495, 534, 833, 1056
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 4 cut(s) 495, 534, 833, 1056
MvnI CGCG 3 cut(s) 54, 63, 439
MwoI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
NdeII GATC 4 cut(s) 3, 694, 749, 1133
NlaIII CATG 5 cut(s) 182, 788, 865, 1184, 1219
NlaIV GGNNCC 3 cut(s) 634, 837, 1053
NmuCI GTSAC 2 cut(s) 505, 586
PagI TCATGA 2 cut(s) 784, 861
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 5 cut(s) 305, 431, 788, 949, 1199
PkrI GCNGC 2 cut(s) 30, 1014
PleI GAGTC 2 cut(s) 871, 1152
PpsI GAGTC 2 cut(s) 871, 1152
Ppu21I YACGTR 1 cut(s) 1151
PshBI ATTAAT 1 cut(s) 906
PsiI TTATAA 1 cut(s) 1296
Psp124BI GAGCTC 1 cut(s) 934
Psp6I CCWGG 4 cut(s) 493, 532, 831, 1054
PspGI CCWGG 4 cut(s) 493, 532, 831, 1054
PspN4I GGNNCC 3 cut(s) 634, 837, 1053
PspPI GGNCC 2 cut(s) 455, 1205
PsrI GAACNNNNNNTAC 2 cut(s) 1131, 1163
PstNI CAGNNNCTG 1 cut(s) 1001
PsuI RGATCY 2 cut(s) 694, 1133
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 6 cut(s) 335, 765, 795, 1005, 1179, 1265
RsaNI GTAC 6 cut(s) 334, 764, 794, 1004, 1178, 1264
RseI CAYNNNNRTG 2 cut(s) 641, 1306
SacI GAGCTC 1 cut(s) 934
SaqAI TTAA 4 cut(s) 153, 411, 906, 1115
SatI GCNGC 2 cut(s) 29, 1013
Sau3AI GATC 4 cut(s) 3, 694, 749, 1133
Sau96I GGNCC 2 cut(s) 455, 1205
ScaI AGTACT 1 cut(s) 1265
SchI GAGTC 2 cut(s) 871, 1152
ScrFI CCNGG 4 cut(s) 495, 534, 833, 1056
SduI GDGCHC 2 cut(s) 840, 934
SfaNI GCATC 1 cut(s) 1078
SfcI CTRYAG 1 cut(s) 733
SfiI GGCCNNNNNGGCC 1 cut(s) 462
SinI GGWCC 1 cut(s) 1205
SmiMI CAYNNNNRTG 2 cut(s) 641, 1306
SmlI CTYRAG 1 cut(s) 1103
SmoI CTYRAG 1 cut(s) 1103
SsiI CCGC 4 cut(s) 52, 63, 714, 1013
SspMI CTAG 1 cut(s) 600
SstI GAGCTC 1 cut(s) 934
StyD4I CCNGG 4 cut(s) 493, 532, 831, 1054
TaaI ACNGT 3 cut(s) 848, 872, 997
TaiI ACGT 4 cut(s) 159, 799, 1153, 1344
TaqI TCGA 2 cut(s) 429, 573
TatI WGTACW 3 cut(s) 1003, 1177, 1263
TauI GCSGC 1 cut(s) 1015
TfiI GAWTC 5 cut(s) 305, 431, 788, 949, 1199
Tru1I TTAA 4 cut(s) 153, 411, 906, 1115
Tru9I TTAA 4 cut(s) 153, 411, 906, 1115
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 2 cut(s) 505, 586
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 2 cut(s) 505, 586
TspDTI ATGAA 9 cut(s) 167, 315, 363, 659, 732, 773, 801, 878, 1326
TspRI CASTG 1 cut(s) 765
VpaK11BI GGWCC 1 cut(s) 1205
VspI ATTAAT 1 cut(s) 906
XagI CCTNNNNNAGG 1 cut(s) 689
XapI RAATTY 3 cut(s) 319, 555, 851
XcmI CCANNNNNNNNNTGG 1 cut(s) 1045
XmiI GTMKAC 1 cut(s) 816
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.