Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Forward (+)

63627754 .. 63633792

Gene Structure 6039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG473900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGATCTCGCAGTTCTTCGTGCTCTCCCAGCGTGGCGACAATATCGTCTTCCGCGACTATCGCGGCGAAGTGCCGAAAGGCAGTGCAGAGATATTTTTCAGGAAAGTGAAGTTCTGGAAAGAAGATGGGCAAGAGGAAGCACCACCTGTCTTTAACGTAGATGGTGTCAACTACTTTCATGTGAAGGTCGTTGGACTCTTGTTTGTTGCAACTACGAGAGCTAATGTATCGCCGTCAATTGTCTTGGAACTTCTACAAAGAATTGCCCGTGTCATCAAAGATTATGTTGGAGTTCTCAATGAGGATTCTATCAGGAAGAATTTTGTGCTTGTCTATGAGTTGCTTGATGAAGTCATAGATTTCGGCTTTGTGCAAACAACATCAACTGAACTGTTGAAGTCTTATATATTTAATGAGCCAATTGTTATTGATGCTGCACGTTTATCATCTCTTGGATCTACAGGCCTTTTTATGCAAGGGACAAAGAGAATGCCTGGAACAGCTGTCACAAAATCTGTTGTTGCTAATGAGCCTGGGGGTAGGAAGAGGGAGGAAATTTTTGTGGACATAATTGAGAAGATCAGTGTTACTTTCAGCTCTAGCGGGTACATTTTGACTTCTGAGATTGATGGTACCATTCAAATGAAGAGCTATCTCACTGGTAATCCAGAAATCCGATTAGCTCTTAATGAGGACCTCGGCATTGGAAGAGGTGGAACATCGGCGTATGACTATAGGAGTTCATTTGGGTCGGGGGCAGTGATACTTGATGACTGCAATTTTCATGAATCTGTGCGTCTTGATAATTTTGATGTAGACAAAACTCTTACTCTGGTACCCCCAGATGGGGAGTTTCCTGTCATGAACTACCGTATGACTCAGGAGTTCAAGCCTCCTTTTCGTATTAATGCTCTGATTGAAGAAGCAGGATCGCTTAAGGCTGAAGTGATTCTGAAACTATATGCTGAATTCCCGTCAAACATTACTGCAAACACCATTTCTGTACAAATGCCACTACCTAAATATACTATGAGAGCCAGTTTTGAGTTGGAACCAGGAGCAGTTGGACAAACAACAGATTTCAAGGAAGCAAATAAGAGACTTGAATGGGGTTTAAAGAAGATTGTTGGTGGATCTGAACATACCCTACGTGCCAGGCTGACATTTTCACAGGAATTTCATGGAAATATCACAAAAGAAGCTGGTCCAGTTAGCATGACATTCACGATACCCATGTATAACTCTTCAAAACTTCAGGTAAAATACTTGCAGATAGCAAAGAAGTCTGGAACTTATAATCCATATCGGTGGGTAAGATATGTTACTCTCGCCAATTCATACGTTGCTCGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

451

Amino Acids

50.61

Weight (kDa)

6.95

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	182 - 451	2.1e-74	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1296
AasI	GACNNNNNNGTC	1 cut(s)	44
Acc65I	GGTACC	2 cut(s)	632, 835
AccB1I	GGYRCC	2 cut(s)	632, 835
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	2 cut(s)	54, 63
AciI	CCGC	3 cut(s)	52, 63, 603
AclWI	GGATC	3 cut(s)	463, 937, 1141
AcsI	RAATTY	4 cut(s)	319, 555, 968, 1175
AcuI	CTGAAG	2 cut(s)	963, 1238
AfaI	GTAC	4 cut(s)	608, 634, 837, 1005
AfiI	CCNNNNNNNGG	3 cut(s)	845, 846, 847
AflII	CTTAAG	1 cut(s)	935
AgsI	TTSAA	7 cut(s)	397, 641, 889, 920, 1084, 1106, 1248
AjnI	CCWGG	4 cut(s)	493, 532, 1054, 1154
AloI	GAACNNNNNNTCC	2 cut(s)	1282, 1314
AluBI	AGCT	6 cut(s)	221, 503, 597, 651, 683, 1202
AluI	AGCT	6 cut(s)	221, 503, 597, 651, 683, 1202
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	1093
AlwI	GGATC	3 cut(s)	463, 937, 1141
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	4 cut(s)	319, 555, 968, 1175
AseI	ATTAAT	1 cut(s)	906
Asp700I	GAANNNNTTC	1 cut(s)	948
Asp718I	GGTACC	2 cut(s)	632, 835
AspS9I	GGNCC	2 cut(s)	694, 1205
AvaII	GGWCC	2 cut(s)	694, 1205
BaeI	ACNNNNGTAYC	4 cut(s)	819, 852, 1220, 1253
BanI	GGYRCC	2 cut(s)	632, 835
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	4 cut(s)	119, 155, 623, 839
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	4 cut(s)	495, 534, 1056, 1156
BcoDI	GTCTC	1 cut(s)	1093
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	2 cut(s)	459, 733
BfrI	CTTAAG	1 cut(s)	935
BisI	GCNGC	2 cut(s)	64, 435
BlsI	GCNGC	2 cut(s)	65, 436
Bme1390I	CCNGG	4 cut(s)	495, 534, 1056, 1156
Bme18I	GGWCC	2 cut(s)	694, 1205
BmgT120I	GGNCC	2 cut(s)	694, 1205
BmiI	GGNNCC	3 cut(s)	634, 837, 1053
BmrFI	CCNGG	4 cut(s)	495, 534, 1056, 1156
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	1151
BsaJI	CCNNGG	2 cut(s)	533, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	845, 846, 847
Bse1I	ACTGG	3 cut(s)	664, 1038, 1208
BseBI	CCWGG	4 cut(s)	495, 534, 1056, 1156
BseDI	CCNNGG	2 cut(s)	533, 697
BseLI	CCNNNNNNNGG	3 cut(s)	845, 846, 847
BseMII	CTCAG	2 cut(s)	612, 893
BseNI	ACTGG	3 cut(s)	664, 1038, 1208
BseXI	GCAGC	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	2 cut(s)	105, 420
Bsh1236I	CGCG	2 cut(s)	54, 63
BshFI	GGCC	1 cut(s)	465
BshNI	GGYRCC	2 cut(s)	632, 835
BsiHKAI	GWGCWC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	845, 846, 847
BsmAI	GTCTC	1 cut(s)	1093
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	1003
Bsp143I	GATC	5 cut(s)	3, 455, 579, 929, 1133
BspACI	CCGC	3 cut(s)	52, 63, 603
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	2 cut(s)	613, 892
BspFNI	CGCG	2 cut(s)	54, 63
BspHI	TCATGA	2 cut(s)	784, 861
BspLI	GGNNCC	3 cut(s)	634, 837, 1053
BspPI	GGATC	3 cut(s)	463, 937, 1141
BspQI	GCTCTTC	1 cut(s)	641
BspT107I	GGYRCC	2 cut(s)	632, 835
BspTI	CTTAAG	1 cut(s)	935
BsrGI	TGTACA	1 cut(s)	1003
BsrI	ACTGG	3 cut(s)	664, 1038, 1208
BssECI	CCNNGG	2 cut(s)	533, 697
BssMI	GATC	5 cut(s)	3, 455, 579, 929, 1133
Bst2UI	CCWGG	4 cut(s)	495, 534, 1056, 1156
Bst4CI	ACNGT	2 cut(s)	393, 872
Bst6I	CTCTTC	4 cut(s)	539, 641, 703, 1249
BstAFI	CTTAAG	1 cut(s)	935
BstAUI	TGTACA	1 cut(s)	1003
BstBAI	YACGTR	1 cut(s)	1151
BstDEI	CTNAG	2 cut(s)	621, 879
BstFNI	CGCG	2 cut(s)	54, 63
BstKTI	GATC	5 cut(s)	6, 458, 582, 932, 1136
BstMAI	GTCTC	1 cut(s)	1093
BstMBI	GATC	5 cut(s)	3, 455, 579, 929, 1133
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 60
BstNI	CCWGG	4 cut(s)	495, 534, 1056, 1156
BstSCI	CCNGG	4 cut(s)	493, 532, 1054, 1154
BstSFI	CTRYAG	2 cut(s)	459, 733
BstUI	CGCG	2 cut(s)	54, 63
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	455, 1133
BstXI	CCANNNNNNTGG	1 cut(s)	1308
BstYI	RGATCY	2 cut(s)	455, 1133
BsuRI	GGCC	1 cut(s)	465
BtsI	GCAGTG	2 cut(s)	88, 765
BtsIMutI	CAGTG	4 cut(s)	88, 589, 657, 765
CciI	TCATGA	2 cut(s)	784, 861
Cfr13I	GGNCC	2 cut(s)	694, 1205
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	4 cut(s)	607, 633, 836, 1004
CviAII	CATG	6 cut(s)	179, 785, 862, 1181, 1216, 1234
CviQI	GTAC	4 cut(s)	607, 633, 836, 1004
DdeI	CTNAG	2 cut(s)	621, 879
DpnI	GATC	5 cut(s)	5, 457, 581, 931, 1135
DpnII	GATC	5 cut(s)	3, 455, 579, 929, 1133
DraI	TTTAAA	1 cut(s)	1116
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	4 cut(s)	539, 641, 703, 1249
EarI	CTCTTC	4 cut(s)	539, 641, 703, 1249
Eco147I	AGGCCT	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	694, 1205
Eco57I	CTGAAG	2 cut(s)	963, 1238
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	968
EcoRII	CCWGG	4 cut(s)	493, 532, 1054, 1154
FaeI	CATG	6 cut(s)	182, 788, 865, 1184, 1219, 1237
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	6 cut(s)	178, 784, 861, 1180, 1215, 1233
FauI	CCCGC	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	2 cut(s)	64, 435
Fsp4HI	GCNGC	2 cut(s)	64, 435
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	2 cut(s)	64, 435
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	465
HgaI	GACGC	1 cut(s)	785
Hin1II	CATG	6 cut(s)	182, 788, 865, 1184, 1219, 1237
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	5 cut(s)	195, 305, 788, 877, 949
Hpy166II	GTNNAC	3 cut(s)	169, 565, 817
Hpy188I	TCNGA	5 cut(s)	622, 677, 915, 954, 1138
Hpy8I	GTNNAC	3 cut(s)	169, 565, 817
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	393, 872
HpyCH4IV	ACGT	4 cut(s)	156, 439, 1150, 1341
HpyCH4V	TGCA	8 cut(s)	86, 209, 373, 437, 475, 777, 989, 1270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 60
HpyF3I	CTNAG	2 cut(s)	621, 879
HpySE526I	ACGT	4 cut(s)	156, 439, 1150, 1341
Hsp92II	CATG	6 cut(s)	182, 788, 865, 1184, 1219, 1237
KpnI	GGTACC	2 cut(s)	636, 839
Kzo9I	GATC	5 cut(s)	3, 455, 579, 929, 1133
LguI	GCTCTTC	1 cut(s)	641
LmnI	GCTCC	1 cut(s)	1058
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	4 cut(s)	156, 439, 1150, 1341
MaeIII	GTNAC	3 cut(s)	505, 586, 1321
MalI	GATC	5 cut(s)	5, 457, 581, 931, 1135
MboI	GATC	5 cut(s)	3, 455, 579, 929, 1133
MfeI	CAATTG	2 cut(s)	237, 420
MflI	RGATCY	2 cut(s)	455, 1133
MhlI	GDGCHC	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	189, 871
MmeI	TCCRAC	4 cut(s)	172, 268, 1029, 1045
MnlI	CCTC	8 cut(s)	127, 295, 540, 544, 685, 704, 707, 903
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	6 cut(s)	153, 411, 687, 906, 936, 1115
MslI	CAYNNNNRTG	2 cut(s)	641, 1306
MspA1I	CMGCKG	1 cut(s)	503
MspCI	CTTAAG	1 cut(s)	935
MspR9I	CCNGG	4 cut(s)	495, 534, 1056, 1156
MunI	CAATTG	2 cut(s)	237, 420
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	4 cut(s)	495, 534, 1056, 1156
MvnI	CGCG	2 cut(s)	54, 63
MwoI	GCNNNNNNNGC	2 cut(s)	28, 60
NdeII	GATC	5 cut(s)	3, 455, 579, 929, 1133
NlaIII	CATG	6 cut(s)	182, 788, 865, 1184, 1219, 1237
NlaIV	GGNNCC	3 cut(s)	634, 837, 1053
NmeAIII	GCCGAG	1 cut(s)	678
NmuCI	GTSAC	1 cut(s)	505
PagI	TCATGA	2 cut(s)	784, 861
PceI	AGGCCT	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	3 cut(s)	305, 788, 949
PkrI	GCNGC	2 cut(s)	65, 436
PleI	GAGTC	2 cut(s)	189, 871
PpsI	GAGTC	2 cut(s)	189, 871
Ppu21I	YACGTR	1 cut(s)	1151
PpuMI	RGGWCCY	1 cut(s)	694
PshBI	ATTAAT	1 cut(s)	906
PsiI	TTATAA	1 cut(s)	1296
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	4 cut(s)	493, 532, 1054, 1154
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	4 cut(s)	493, 532, 1054, 1154
PspN4I	GGNNCC	3 cut(s)	634, 837, 1053
PspPI	GGNCC	2 cut(s)	694, 1205
PspPPI	RGGWCCY	1 cut(s)	694
PsrI	GAACNNNNNNTAC	2 cut(s)	1131, 1163
PsuI	RGATCY	2 cut(s)	455, 1133
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	4 cut(s)	608, 634, 837, 1005
RsaNI	GTAC	4 cut(s)	607, 633, 836, 1004
RseI	CAYNNNNRTG	2 cut(s)	641, 1306
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	6 cut(s)	153, 411, 687, 906, 936, 1115
SatI	GCNGC	2 cut(s)	64, 435
Sau3AI	GATC	5 cut(s)	3, 455, 579, 929, 1133
Sau96I	GGNCC	2 cut(s)	694, 1205
SchI	GAGTC	2 cut(s)	189, 871
ScrFI	CCNGG	4 cut(s)	495, 534, 1056, 1156
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	2 cut(s)	459, 733
SinI	GGWCC	2 cut(s)	694, 1205
SmiMI	CAYNNNNRTG	2 cut(s)	641, 1306
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	3 cut(s)	52, 63, 603
SspMI	CTAG	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	4 cut(s)	493, 532, 1054, 1154
TaaI	ACNGT	2 cut(s)	393, 872
TaiI	ACGT	4 cut(s)	159, 442, 1153, 1344
TatI	WGTACW	1 cut(s)	1003
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	305, 788, 949
Tru1I	TTAA	6 cut(s)	153, 411, 687, 906, 936, 1115
Tru9I	TTAA	6 cut(s)	153, 411, 687, 906, 936, 1115
TscAI	CASTG	4 cut(s)	88, 589, 664, 765
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	9 cut(s)	167, 363, 659, 732, 773, 801, 878, 1169, 1326
TspRI	CASTG	4 cut(s)	88, 589, 664, 765
Vha464I	CTTAAG	1 cut(s)	935
VpaK11BI	GGWCC	2 cut(s)	694, 1205
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	4 cut(s)	319, 555, 968, 1175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.