Rmu_ssc0000452.1_g000016

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000452.1
Physical Location & Seq
Reverse (-)
89105 .. 92863
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000452.1_g000016.1.cds

Sequence Viewer

Length: 1326 bp
atgatttctcagttctttgttctatcgcagagaggcgataatatcgtcttccgcgactatcgcggtgaagtagcgaagggcagtgcggagattttcttccgcaaggtgaagttttggaaggaggatggagaaggggaagcgccacctgtctttaatgtggatggtgtgaactattttcacgtgaaggaagctggactgttctttgttgcgacgacgagagtgaatgtgtcgccttctctggttttggaacttttgagaaggattgcgagagtcattaaagattaccttggggttcttagtgaagaatcgttgcgaaaaaactttgtgcttgtgtatgagttgctggaccaagttattgattttggttttgtgcaaacgacttcaactgaggttttgaagtcgtatgtgttcaatgagccgattgcggttgctgctgaccatttacaaccccttggtcctgccgccatttttatggccaaaagaatgcctgtgacaactatcacaaaatctgttgtagctaatgagcgtgggggtaggaagagagaggagatttttgtggacataattgagaatctgagtgtcacattcagttccagtgggtatatacttacttctgaaattgatggtactattcaattgaagagttatctgacaggcaatccagacattcgacttgctcttaatgaggaagtgagtataggaagagatggagggtcaacttatgggcctgtcatactagatgattgtaacttccatgaatctgtacgtctcaacaattttgacgttgacagaacactgacactgggttcaacagatggtgaatttcctatcatgaattaccgcataactcaggaattcaagcctccctttcgtattaatgcattagttgaagaatcagggcgccttaaggctgaagtgactatcaaagtgcatgctgaattcccatcgagcatcattgcagataaaattatggtgcagctaccggtgccaccatatacaaccaaggttagttttgagttggaacctggaacagttggaaacacatccgatttcaaggaagcaaacaagagaattgaatggggtttaaagaagatcgctggtggatctgaacatactttacatgcaaagctgacatttgcacaggaattacgtggaaatattaccaaggaagctggacctgtgagcatgacattcacaatacccatgtacaatgcttcaaggcttcaggtaaaatacttgcatataacaaagaagtcgaagagctataatccgtatagatgggtgagatacgtcacacagtcaaattcctatgttgctcggttataa

Protein Analysis

441

Amino Acids

49.64

Weight (kDa)

7.74

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1324
AccB1I GGYRCC 2 cut(s) 900, 985
AccII CGCG 2 cut(s) 54, 63
AciI CCGC 7 cut(s) 52, 63, 86, 100, 425, 462, 841
AclWI GGATC 1 cut(s) 1111
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 4 cut(s) 821, 854, 938, 1303
AcuI CTGAAG 2 cut(s) 933, 1208
AcvI CACGTG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 901
AfaI GTAC 3 cut(s) 628, 765, 1208
AflII CTTAAG 1 cut(s) 905
AgeI ACCGGT 1 cut(s) 982
AjnI CCWGG 1 cut(s) 1024
AluBI AGCT 6 cut(s) 191, 518, 979, 1129, 1172, 1263
AluI AGCT 6 cut(s) 191, 518, 979, 1129, 1172, 1263
Alw26I GTCTC 1 cut(s) 773
AlwI GGATC 1 cut(s) 1111
AoxI GGCC 2 cut(s) 474, 725
ApeKI GCWGC 2 cut(s) 431, 976
ApoI RAATTY 4 cut(s) 821, 854, 938, 1303
AseI ATTAAT 1 cut(s) 876
AsiGI ACCGGT 1 cut(s) 982
AspLEI GCGC 2 cut(s) 142, 903
AspS9I GGNCC 4 cut(s) 346, 455, 725, 1175
AsuHPI GGTGA 4 cut(s) 77, 118, 830, 1294
AvaII GGWCC 3 cut(s) 346, 455, 1175
BalI TGGCCA 1 cut(s) 476
BanI GGYRCC 2 cut(s) 900, 985
BbrPI CACGTG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 418, 988
BccI CCATC 7 cut(s) 119, 155, 617, 701, 809, 952, 1272
BciT130I CCWGG 1 cut(s) 1026
BcoDI GTCTC 1 cut(s) 773
BfaI CTAG 1 cut(s) 737
BfoI RGCGCY 2 cut(s) 143, 904
BfrI CTTAAG 1 cut(s) 905
BisI GCNGC 3 cut(s) 432, 462, 977
BlsI GCNGC 3 cut(s) 433, 463, 978
Bme1390I CCNGG 1 cut(s) 1026
Bme18I GGWCC 3 cut(s) 346, 455, 1175
BmgT120I GGNCC 4 cut(s) 346, 455, 725, 1175
BmiI GGNNCC 3 cut(s) 902, 987, 1023
BmrFI CCNGG 1 cut(s) 1026
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 1 cut(s) 960
BmuI ACTGGG 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 40
BsaAI YACGTR 2 cut(s) 181, 1151
BsaHI GRCGYC 1 cut(s) 901
BsaJI CCNNGG 4 cut(s) 286, 451, 1002, 1164
BsaWI WCCGGW 1 cut(s) 982
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 2 cut(s) 594, 807
Bse3DI GCAATG 1 cut(s) 954
BseBI CCWGG 1 cut(s) 1026
BseDI CCNNGG 4 cut(s) 286, 451, 1002, 1164
BseGI GGATG 3 cut(s) 130, 166, 1043
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 4 cut(s) 23, 378, 566, 863
BseNI ACTGG 2 cut(s) 594, 807
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 2 cut(s) 418, 988
BsgI GTGCAG 1 cut(s) 995
Bsh1236I CGCG 2 cut(s) 54, 63
BshFI GGCC 2 cut(s) 476, 727
BshNI GGYRCC 2 cut(s) 900, 985
BshTI ACCGGT 1 cut(s) 982
BsiSI CCGG 1 cut(s) 983
BsmAI GTCTC 1 cut(s) 773
BsmBI CGTCTC 1 cut(s) 773
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 2 cut(s) 476, 727
Bsp1407I TGTACA 1 cut(s) 1206
Bsp143I GATC 2 cut(s) 1092, 1103
BspACI CCGC 7 cut(s) 52, 63, 86, 100, 425, 462, 841
BspANI GGCC 2 cut(s) 476, 727
BspCNI CTCAG 4 cut(s) 22, 379, 567, 862
BspFNI CGCG 2 cut(s) 54, 63
BspHI TCATGA 1 cut(s) 831
BspLI GGNNCC 3 cut(s) 902, 987, 1023
BspPI GGATC 1 cut(s) 1111
BspQI GCTCTTC 1 cut(s) 1253
BspT107I GGYRCC 2 cut(s) 900, 985
BspTI CTTAAG 1 cut(s) 905
BsrDI GCAATG 1 cut(s) 954
BsrFI RCCGGY 1 cut(s) 982
BsrGI TGTACA 1 cut(s) 1206
BsrI ACTGG 2 cut(s) 594, 807
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 4 cut(s) 286, 451, 1002, 1164
BssMI GATC 2 cut(s) 1092, 1103
BssNI GRCGYC 1 cut(s) 901
BssT1I CCWWGG 4 cut(s) 286, 451, 1002, 1164
Bst2UI CCWGG 1 cut(s) 1026
Bst4CI ACNGT 3 cut(s) 198, 1033, 1299
Bst6I CTCTTC 4 cut(s) 533, 635, 697, 1253
BstACI GRCGYC 1 cut(s) 901
BstAFI CTTAAG 1 cut(s) 905
BstAUI TGTACA 1 cut(s) 1206
BstBAI YACGTR 2 cut(s) 181, 1151
BstC8I GCNNGC 1 cut(s) 933
BstDEI CTNAG 5 cut(s) 9, 296, 387, 575, 849
BstF5I GGATG 3 cut(s) 130, 166, 1043
BstFNI CGCG 2 cut(s) 54, 63
BstH2I RGCGCY 2 cut(s) 143, 904
BstHHI GCGC 2 cut(s) 142, 903
BstKTI GATC 2 cut(s) 1095, 1106
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 2 cut(s) 1092, 1103
BstMWI GCNNNNNNNGC 3 cut(s) 60, 431, 985
BstNI CCWGG 1 cut(s) 1026
BstNSI RCATGY 2 cut(s) 935, 1124
BstSCI CCNGG 1 cut(s) 1024
BstUI CGCG 2 cut(s) 54, 63
BstV1I GCAGC 2 cut(s) 418, 988
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 1103
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 1 cut(s) 1103
BsuRI GGCC 2 cut(s) 476, 727
BtsCI GGATG 3 cut(s) 130, 166, 1043
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 4 cut(s) 88, 601, 794, 800
Cac8I GCNNGC 1 cut(s) 933
CciI TCATGA 1 cut(s) 831
CfoI GCGC 2 cut(s) 142, 903
Cfr10I RCCGGY 1 cut(s) 982
Cfr13I GGNCC 4 cut(s) 346, 455, 725, 1175
Csp6I GTAC 3 cut(s) 627, 764, 1207
CspAI ACCGGT 1 cut(s) 982
CviAII CATG 6 cut(s) 755, 832, 932, 1121, 1186, 1204
CviQI GTAC 3 cut(s) 627, 764, 1207
DdeI CTNAG 5 cut(s) 9, 296, 387, 575, 849
DinI GGCGCC 1 cut(s) 902
DpnI GATC 2 cut(s) 1094, 1105
DpnII GATC 2 cut(s) 1092, 1103
DraI TTTAAA 1 cut(s) 1086
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 4 cut(s) 533, 635, 697, 1253
EarI CTCTTC 4 cut(s) 533, 635, 697, 1253
Eco130I CCWWGG 4 cut(s) 286, 451, 1002, 1164
Eco47I GGWCC 3 cut(s) 346, 455, 1175
Eco57I CTGAAG 2 cut(s) 933, 1208
Eco72I CACGTG 1 cut(s) 181
EcoRI GAATTC 2 cut(s) 854, 938
EcoRII CCWGG 1 cut(s) 1024
EcoT14I CCWWGG 4 cut(s) 286, 451, 1002, 1164
EcoT22I ATGCAT 1 cut(s) 883
EgeI GGCGCC 1 cut(s) 902
EheI GGCGCC 1 cut(s) 902
ErhI CCWWGG 4 cut(s) 286, 451, 1002, 1164
Esp3I CGTCTC 1 cut(s) 773
FaeI CATG 6 cut(s) 758, 835, 935, 1124, 1189, 1207
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 851, 883
FatI CATG 6 cut(s) 754, 831, 931, 1120, 1185, 1203
Fnu4HI GCNGC 3 cut(s) 432, 462, 977
FokI GGATG 3 cut(s) 137, 173, 1030
Fsp4HI GCNGC 3 cut(s) 432, 462, 977
FspBI CTAG 1 cut(s) 737
GlaI GCGC 2 cut(s) 141, 902
GluI GCNGC 3 cut(s) 432, 462, 977
HaeII RGCGCY 2 cut(s) 143, 904
HaeIII GGCC 2 cut(s) 476, 727
HapII CCGG 1 cut(s) 983
HhaI GCGC 2 cut(s) 142, 903
Hin1I GRCGYC 1 cut(s) 901
Hin1II CATG 6 cut(s) 758, 835, 935, 1124, 1189, 1207
Hin6I GCGC 2 cut(s) 140, 901
HinP1I GCGC 2 cut(s) 140, 901
HincII GTYRAC 2 cut(s) 717, 787
HindII GTYRAC 2 cut(s) 717, 787
HinfI GANTC 5 cut(s) 270, 305, 571, 758, 893
HpaII CCGG 1 cut(s) 983
HphI GGTGA 4 cut(s) 77, 118, 830, 1294
Hpy166II GTNNAC 4 cut(s) 169, 559, 717, 787
Hpy188I TCNGA 5 cut(s) 576, 616, 651, 1048, 1108
Hpy188III TCNNGA 3 cut(s) 662, 832, 851
Hpy8I GTNNAC 4 cut(s) 169, 559, 717, 787
Hpy99I CGWCG 2 cut(s) 214, 217
HpyAV CCTTC 6 cut(s) 70, 112, 125, 178, 243, 252
HpyCH4III ACNGT 3 cut(s) 198, 1033, 1299
HpyCH4IV ACGT 5 cut(s) 180, 766, 783, 1150, 1290
HpyCH4V TGCA 8 cut(s) 373, 881, 931, 959, 976, 1124, 1139, 1240
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 431, 985
HpyF3I CTNAG 5 cut(s) 9, 296, 387, 575, 849
HpySE526I ACGT 5 cut(s) 180, 766, 783, 1150, 1290
Hsp92I GRCGYC 1 cut(s) 901
Hsp92II CATG 6 cut(s) 758, 835, 935, 1124, 1189, 1207
HspAI GCGC 2 cut(s) 140, 901
KasI GGCGCC 1 cut(s) 900
Kzo9I GATC 2 cut(s) 1092, 1103
LguI GCTCTTC 1 cut(s) 1253
Lsp1109I GCAGC 2 cut(s) 418, 988
LweI GCATC 1 cut(s) 960
MaeI CTAG 1 cut(s) 737
MaeII ACGT 5 cut(s) 180, 766, 783, 1150, 1290
MaeIII GTNAC 5 cut(s) 490, 580, 746, 916, 1291
MalI GATC 2 cut(s) 1094, 1105
MboI GATC 2 cut(s) 1092, 1103
MboII GAAGA 9 cut(s) 40, 88, 314, 550, 652, 714, 902, 1102, 1270
MfeI CAATTG 1 cut(s) 635
MflI RGATCY 1 cut(s) 1103
MlsI TGGCCA 1 cut(s) 476
MluNI TGGCCA 1 cut(s) 476
Mly113I GGCGCC 1 cut(s) 901
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 999, 1015
MnlI CCTC 7 cut(s) 26, 115, 382, 538, 679, 704, 873
Mox20I TGGCCA 1 cut(s) 476
Mph1103I ATGCAT 1 cut(s) 883
MscI TGGCCA 1 cut(s) 476
MseI TTAA 6 cut(s) 153, 276, 681, 876, 906, 1085
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 1 cut(s) 983
MspR9I CCNGG 1 cut(s) 1026
MunI CAATTG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 1 cut(s) 1026
MvnI CGCG 2 cut(s) 54, 63
MwoI GCNNNNNNNGC 3 cut(s) 60, 431, 985
NarI GGCGCC 1 cut(s) 901
NdeII GATC 2 cut(s) 1092, 1103
NlaIII CATG 6 cut(s) 758, 835, 935, 1124, 1189, 1207
NlaIV GGNNCC 3 cut(s) 902, 987, 1023
NmuCI GTSAC 4 cut(s) 490, 580, 916, 1291
NsiI ATGCAT 1 cut(s) 883
NspI RCATGY 2 cut(s) 935, 1124
PaeI GCATGC 1 cut(s) 935
PagI TCATGA 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 4 cut(s) 305, 571, 758, 893
PinAI ACCGGT 1 cut(s) 982
PkrI GCNGC 3 cut(s) 433, 463, 978
PleI GAGTC 1 cut(s) 278
PluTI GGCGCC 1 cut(s) 904
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 1 cut(s) 278
Ppu21I YACGTR 2 cut(s) 181, 1151
PshBI ATTAAT 1 cut(s) 876
PsiI TTATAA 1 cut(s) 1324
Psp6I CCWGG 1 cut(s) 1024
PspCI CACGTG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 1024
PspN4I GGNNCC 3 cut(s) 902, 987, 1023
PspPI GGNCC 4 cut(s) 346, 455, 725, 1175
PsrI GAACNNNNNNTAC 2 cut(s) 1101, 1133
PsuI RGATCY 1 cut(s) 1103
RsaI GTAC 3 cut(s) 628, 765, 1208
RsaNI GTAC 3 cut(s) 627, 764, 1207
RseI CAYNNNNRTG 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 1253
SaqAI TTAA 6 cut(s) 153, 276, 681, 876, 906, 1085
SatI GCNGC 3 cut(s) 432, 462, 977
Sau3AI GATC 2 cut(s) 1092, 1103
Sau96I GGNCC 4 cut(s) 346, 455, 725, 1175
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 1026
SfaNI GCATC 1 cut(s) 960
SfoI GGCGCC 1 cut(s) 902
SinI GGWCC 3 cut(s) 346, 455, 1175
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
SphI GCATGC 1 cut(s) 935
SsiI CCGC 7 cut(s) 52, 63, 86, 100, 425, 462, 841
SspDI GGCGCC 1 cut(s) 900
SspI AATATT 1 cut(s) 1159
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 1 cut(s) 1024
StyI CCWWGG 4 cut(s) 286, 451, 1002, 1164
TaaI ACNGT 3 cut(s) 198, 1033, 1299
TaiI ACGT 5 cut(s) 183, 769, 786, 1153, 1293
TaqI TCGA 3 cut(s) 670, 947, 1256
TatI WGTACW 1 cut(s) 1206
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 4 cut(s) 305, 571, 758, 893
Tru1I TTAA 6 cut(s) 153, 276, 681, 876, 906, 1085
Tru9I TTAA 6 cut(s) 153, 276, 681, 876, 906, 1085
TscAI CASTG 4 cut(s) 88, 601, 801, 807
TseFI GTSAC 4 cut(s) 490, 580, 916, 1291
TseI GCWGC 2 cut(s) 431, 976
Tsp45I GTSAC 4 cut(s) 490, 580, 916, 1291
TspDTI ATGAA 2 cut(s) 771, 848
TspGWI ACGGA 1 cut(s) 1260
TspRI CASTG 4 cut(s) 88, 601, 801, 807
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 3 cut(s) 346, 455, 1175
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 4 cut(s) 821, 854, 938, 1303
XceI RCATGY 2 cut(s) 935, 1124
XspI CTAG 1 cut(s) 737
Zsp2I ATGCAT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.