Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Reverse (-)

9877337 .. 9883069

Gene Structure 5733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001055

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATCTCGCAGTTCTTCGTGCTCTCCCAGCGTGGCGACAATATCGTCTTCCGCGACTATCGCGGCGAAGTGCCGAAAGGCAGTGCAGAGATATTTTTCAGGAAAGTGAAGTTCTGGAAAGAAGATGGGCAAGAGGAAGCACCACCTGTCTTTAACGTAGACGGCGTCAACTATTTTCATGTGAAGGTCGTTGGACTCCTGTTTGTTGCAACTACGAGAGCTAATGTATCGCCGTCAATTGTCTTGGAACTTTTACAAAGAATTGCCCGTGTCATCAAAGATTATGTTGGAGTTCTCAATGAGGATTCTATCAGGAAGAATTTTGTGCTTGTCTATGAGTTGCTTGATGAAGTCATAGATTTTGGCTTTGTGCAAACAACATCAACTGAACTGTTGAAGTCTTATATATTTAATGAGCCAATTGTAATTGATGCTGCACGTTTATCATCTCTTGGATCTACAGGCCTTTTTATGCAAGGGACAAAGAGAATGCCTGGAACAGCTGTCACAAAATCTGTTGTTGCTAATGAGCCTGGGGGTAGGAAGAGGGAGGAAATTTTTGTGGACATAATTGAGAAGATCAGTGTTACTTTCAGCTCTAGCGGGTACATTTTGACTTCTGAGATTGATGGTACCATTCAAATGAAGAGCTATCTCACTGGTAATCCAGAAATCCGATTAGCTCTTAATGAGGACCTCGGCATTGGAAGAGGTGGAACATCGGCATTGGAAGCTCAACTGTGTTGTTTATCTCCATCTCCCTATGAATGTGCTAAGGTAAAATACTTGCAGATAGCAAAGAAGTCTGGAACTTATAATCCATATCGGTGGGTAAGATATGTTACTCTTGCCAATTCATACGTTGCTCGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

292

Amino Acids

32.53

Weight (kDa)

8.29

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	182 - 235	5.2e-17	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	816
AasI	GACNNNNNNGTC	1 cut(s)	44
Acc65I	GGTACC	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	2 cut(s)	54, 63
AciI	CCGC	3 cut(s)	52, 63, 603
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	2 cut(s)	319, 555
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	608, 634
AgsI	TTSAA	2 cut(s)	397, 641
AjnI	CCWGG	2 cut(s)	493, 532
AloI	GAACNNNNNNTCC	2 cut(s)	802, 834
AluBI	AGCT	6 cut(s)	221, 503, 597, 651, 683, 734
AluI	AGCT	6 cut(s)	221, 503, 597, 651, 683, 734
Alw21I	GWGCWC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	2 cut(s)	319, 555
Asp718I	GGTACC	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	694
AvaII	GGWCC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	3 cut(s)	119, 623, 763
BceAI	ACGGC	2 cut(s)	178, 217
BciT130I	CCWGG	2 cut(s)	495, 534
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	2 cut(s)	64, 435
BlsI	GCNGC	2 cut(s)	65, 436
Bme1390I	CCNGG	2 cut(s)	495, 534
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	2 cut(s)	495, 534
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	533, 697
Bse1I	ACTGG	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	495, 534
BseDI	CCNNGG	2 cut(s)	533, 697
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	664
BseXI	GCAGC	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	2 cut(s)	105, 420
Bsh1236I	CGCG	2 cut(s)	54, 63
BshFI	GGCC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	3, 455, 579
BspACI	CCGC	3 cut(s)	52, 63, 603
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	2 cut(s)	54, 63
BspLI	GGNNCC	1 cut(s)	634
BspPI	GGATC	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	2 cut(s)	533, 697
BssMI	GATC	3 cut(s)	3, 455, 579
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	495, 534
Bst4CI	ACNGT	2 cut(s)	393, 741
Bst6I	CTCTTC	3 cut(s)	539, 641, 703
BstACI	GRCGYC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	621, 774
BstFNI	CGCG	2 cut(s)	54, 63
BstKTI	GATC	3 cut(s)	6, 458, 582
BstMBI	GATC	3 cut(s)	3, 455, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 60, 731
BstNI	CCWGG	2 cut(s)	495, 534
BstSCI	CCNGG	2 cut(s)	493, 532
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	2 cut(s)	54, 63
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	455
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	465
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	3 cut(s)	88, 589, 657
Cfr13I	GGNCC	1 cut(s)	694
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	607, 633
CviAII	CATG	1 cut(s)	179
CviQI	GTAC	2 cut(s)	607, 633
DdeI	CTNAG	2 cut(s)	621, 774
DpnI	GATC	3 cut(s)	5, 457, 581
DpnII	GATC	3 cut(s)	3, 455, 579
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	3 cut(s)	539, 641, 703
EarI	CTCTTC	3 cut(s)	539, 641, 703
Eco147I	AGGCCT	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRII	CCWGG	2 cut(s)	493, 532
FaeI	CATG	1 cut(s)	182
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	178
FauI	CCCGC	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	64, 435
Fsp4HI	GCNGC	2 cut(s)	64, 435
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	2 cut(s)	64, 435
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	465
HgaI	GACGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	195, 305
Hpy166II	GTNNAC	3 cut(s)	160, 169, 565
Hpy188I	TCNGA	2 cut(s)	622, 677
Hpy188III	TCNNGA	5 cut(s)	100, 115, 313, 668, 807
Hpy8I	GTNNAC	3 cut(s)	160, 169, 565
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	393, 741
HpyCH4IV	ACGT	3 cut(s)	156, 439, 861
HpyCH4V	TGCA	6 cut(s)	86, 209, 373, 437, 475, 790
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 60, 731
HpyF3I	CTNAG	2 cut(s)	621, 774
HpySE526I	ACGT	3 cut(s)	156, 439, 861
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	182
KpnI	GGTACC	1 cut(s)	636
Kzo9I	GATC	3 cut(s)	3, 455, 579
LguI	GCTCTTC	1 cut(s)	641
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	3 cut(s)	156, 439, 861
MaeIII	GTNAC	3 cut(s)	505, 586, 841
MalI	GATC	3 cut(s)	5, 457, 581
MboI	GATC	3 cut(s)	3, 455, 579
MboII	GAAGA	8 cut(s)	7, 40, 134, 328, 556, 589, 658, 720
MfeI	CAATTG	2 cut(s)	237, 420
MflI	RGATCY	1 cut(s)	455
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	8 cut(s)	237, 261, 319, 420, 426, 555, 570, 853
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	172, 268
MnlI	CCTC	7 cut(s)	127, 295, 540, 544, 685, 704, 707
MseI	TTAA	3 cut(s)	153, 411, 687
MslI	CAYNNNNRTG	2 cut(s)	641, 826
MspA1I	CMGCKG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	495, 534
MunI	CAATTG	2 cut(s)	237, 420
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	2 cut(s)	495, 534
MvnI	CGCG	2 cut(s)	54, 63
MwoI	GCNNNNNNNGC	3 cut(s)	28, 60, 731
NdeII	GATC	3 cut(s)	3, 455, 579
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	634
NmeAIII	GCCGAG	1 cut(s)	678
NmuCI	GTSAC	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 162
PctI	GAATGC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	305
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	65, 436
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	694
PsiI	TTATAA	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	2 cut(s)	493, 532
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	493, 532
PspN4I	GGNNCC	1 cut(s)	634
PspPI	GGNCC	1 cut(s)	694
PspPPI	RGGWCCY	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	455
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	2 cut(s)	608, 634
RsaNI	GTAC	2 cut(s)	607, 633
RseI	CAYNNNNRTG	2 cut(s)	641, 826
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	3 cut(s)	153, 411, 687
SatI	GCNGC	2 cut(s)	64, 435
Sau3AI	GATC	3 cut(s)	3, 455, 579
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	495, 534
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	2 cut(s)	641, 826
Sse9I	AATT	8 cut(s)	237, 261, 319, 420, 426, 555, 570, 853
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	3 cut(s)	52, 63, 603
SspMI	CTAG	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	493, 532
TaaI	ACNGT	2 cut(s)	393, 741
TaiI	ACGT	3 cut(s)	159, 442, 864
TasI	AATT	8 cut(s)	237, 261, 319, 420, 426, 555, 570, 853
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	3 cut(s)	153, 411, 687
Tru9I	TTAA	3 cut(s)	153, 411, 687
TscAI	CASTG	3 cut(s)	88, 589, 664
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	5 cut(s)	167, 363, 659, 780, 846
TspRI	CASTG	3 cut(s)	88, 589, 664
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	2 cut(s)	319, 555
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.