Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Reverse (-)

25349629 .. 25356570

Gene Structure 6942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1196400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGATCTCGCAGTTCTTCCTGCTCTCGCAGCGTGGCGACAATATCGTCTTCCGCGACTATCGCGGTGAAGTGCCAAAAGGAAGCGCGGAGATATTTTTCCGGAAAGTGAAGTTTTGGAAAGAAGATGGGCAAGAGGAAGCACCCCCTGTCTTTAACGTGGATGGTGTCAACTACTTTCATGTGAAGGTTGTTGGACTATTGTTTGTCGCAACCACAAGAGCTAATGTATCACCATCTCTTGTCTTGGAACTTCTACAAAGAATTGCCCGTGTCATCAAAGATTATGTTGGGGTTCTCAATGAAGATTCTATAAGGAAGAATTTTGTGCTTGTGTACGAGTTGCTTGATGAAGTCATTGATTTTGGCTTTGTGCAAACAACATCAACTGAATTGTTGAAGTCTTATATATTTAATGAGCCAATTGTTCTTGAATCTGCGCGTTTATCATCTGTTGGCCCTACTGGCCTTTTTATGCAAGGGACAAAGAGAATGCCTGGAACAGCTGTCACAAAATCAGTTGTTGCAAATGAGCCTGGTGGTAGGAAGAGGGAGGAAATTTTTGTGGATATAATCGAGAAGATTAGTGTGACTTTCAGCTCTAGTGGGTACATATTGACTTCTGAGATTGATGGAACCATTCAAATGAAAAGCTATCTCTCTGGAAATCCAGAAATCCGATTAGCCCTCAATGAGGATCTGGGCATAGGAAGAGGTGGAGGGTCGGGCTATGACTATAGGAGTTCATTTGGATCAGGAGCGGTGGTACTTGATGATTGCAATTTTCATGAATCTGTACGTCTTGATAATTTTGAAGTAGACAAAACTCTGACCCTGGTGCCCCCTGACGGTGAATTTCCTGTCATGAACTACCGTATGACTCAGGAGTTCAAGCCCCCTTTTCGTATTAATGCGTTGATTGAAGAAGCAGGAGTTCATAAGGCTGAAGTGATTCTGAAAATATATGCTGAGTTCCCCTCGAACATTACTTCCAACACAGTTGCTATACAAATGCCGCTACCTAAATATACTATCAGAGCCAGTTTTGAGTTGGAACCAGGAGCAGTTGGACAAACAACAGACTTCAAGGATACCAATAAGAGACTTGAGTGGGGATTAAAGAAGATTGTCGGTGGATCTGAACATACGCTACGTGCCAGACTCACATTTTCCCCTGAAGTACATGGAAACATAACAAAAGAATCTGGTCCAGTTAGCATGACATTTACAATACCTATGTATAATTCTTCAAGACTTCAGGTAAAGTACTTGCAGATAGCAAAGAAATCTGGGACTTATAATCCATATCGGTGGGTAAGATATGTTACTCTCGCCAATTCATACGTTGCTCGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

452

Amino Acids

50.58

Weight (kDa)

7.0

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	182 - 451	4.2e-74	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1296
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	835
AccBSI	CCGCTC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	4 cut(s)	54, 63, 86, 439
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	5 cut(s)	52, 63, 86, 758, 1013
AclWI	GGATC	3 cut(s)	702, 757, 1141
AcsI	RAATTY	3 cut(s)	319, 555, 851
AcuI	CTGAAG	3 cut(s)	963, 1194, 1238
AfaI	GTAC	6 cut(s)	335, 608, 765, 795, 1179, 1265
AfiI	CCNNNNNNNGG	2 cut(s)	691, 845
AgsI	TTSAA	8 cut(s)	397, 431, 641, 812, 889, 920, 1084, 1248
AjnI	CCWGG	4 cut(s)	493, 532, 831, 1054
AloI	GAACNNNNNNTCC	2 cut(s)	971, 1003
AluBI	AGCT	4 cut(s)	221, 503, 597, 651
AluI	AGCT	4 cut(s)	221, 503, 597, 651
Alw26I	GTCTC	1 cut(s)	1093
AlwI	GGATC	3 cut(s)	702, 757, 1141
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	2 cut(s)	454, 463
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	3 cut(s)	319, 555, 851
AseI	ATTAAT	1 cut(s)	906
Asp700I	GAANNNNTTC	1 cut(s)	948
AspLEI	GCGC	2 cut(s)	86, 439
AspS9I	GGNCC	2 cut(s)	455, 1205
AsuHPI	GGTGA	3 cut(s)	77, 222, 860
AvaII	GGWCC	1 cut(s)	1205
BaeGI	GKGCMC	1 cut(s)	840
BanI	GGYRCC	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	4 cut(s)	119, 155, 241, 623
BciT130I	CCWGG	4 cut(s)	495, 534, 833, 1056
BciVI	GTATCC	1 cut(s)	1081
BcoDI	GTCTC	1 cut(s)	1093
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	733
BfuI	GTATCC	1 cut(s)	1081
BglI	GCCNNNNNGGC	1 cut(s)	462
BisI	GCNGC	2 cut(s)	29, 1013
BlsI	GCNGC	2 cut(s)	30, 1014
BmcAI	AGTACT	1 cut(s)	1265
Bme1390I	CCNGG	4 cut(s)	495, 534, 833, 1056
Bme18I	GGWCC	1 cut(s)	1205
BmgT120I	GGNCC	2 cut(s)	455, 1205
BmiI	GGNNCC	3 cut(s)	634, 837, 1053
BmrFI	CCNGG	4 cut(s)	495, 534, 833, 1056
BpiI	GAAGAC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	959, 991
BpuEI	CTTGAG	1 cut(s)	1124
BsaAI	YACGTR	1 cut(s)	1151
BsaJI	CCNNGG	1 cut(s)	831
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	2 cut(s)	691, 845
Bse1I	ACTGG	3 cut(s)	466, 1038, 1208
BseAI	TCCGGA	1 cut(s)	99
BseBI	CCWGG	4 cut(s)	495, 534, 833, 1056
BseDI	CCNNGG	1 cut(s)	831
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	691, 845
BseMII	CTCAG	3 cut(s)	612, 893, 957
BseNI	ACTGG	3 cut(s)	466, 1038, 1208
BseSI	GKGCMC	1 cut(s)	840
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	4 cut(s)	54, 63, 86, 439
BshFI	GGCC	2 cut(s)	456, 465
BshNI	GGYRCC	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	2 cut(s)	493, 1303
BslI	CCNNNNNNNGG	2 cut(s)	691, 845
BsmAI	GTCTC	1 cut(s)	1093
BsmFI	GGGAC	2 cut(s)	493, 1303
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	456, 465
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp13I	TCCGGA	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	3, 694, 749, 1133
BspACI	CCGC	5 cut(s)	52, 63, 86, 758, 1013
BspANI	GGCC	2 cut(s)	456, 465
BspCNI	CTCAG	3 cut(s)	613, 892, 958
BspEI	TCCGGA	1 cut(s)	99
BspFNI	CGCG	4 cut(s)	54, 63, 86, 439
BspHI	TCATGA	2 cut(s)	784, 861
BspLI	GGNNCC	3 cut(s)	634, 837, 1053
BspPI	GGATC	3 cut(s)	702, 757, 1141
BspT107I	GGYRCC	1 cut(s)	835
BsrBI	CCGCTC	1 cut(s)	758
BsrI	ACTGG	3 cut(s)	466, 1038, 1208
BssECI	CCNNGG	1 cut(s)	831
BssMI	GATC	4 cut(s)	3, 694, 749, 1133
Bst2UI	CCWGG	4 cut(s)	495, 534, 833, 1056
Bst4CI	ACNGT	3 cut(s)	848, 872, 997
Bst6I	CTCTTC	2 cut(s)	539, 703
BstBAI	YACGTR	1 cut(s)	1151
BstDEI	CTNAG	3 cut(s)	621, 879, 966
BstENI	CCTNNNNNAGG	1 cut(s)	689
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	4 cut(s)	54, 63, 86, 439
BstHHI	GCGC	2 cut(s)	86, 439
BstKTI	GATC	4 cut(s)	6, 697, 752, 1136
BstMAI	GTCTC	1 cut(s)	1093
BstMBI	GATC	4 cut(s)	3, 694, 749, 1133
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 60, 462
BstNI	CCWGG	4 cut(s)	495, 534, 833, 1056
BstSCI	CCNGG	4 cut(s)	493, 532, 831, 1054
BstSFI	CTRYAG	1 cut(s)	733
BstSLI	GKGCMC	1 cut(s)	840
BstUI	CGCG	4 cut(s)	54, 63, 86, 439
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	694, 1133
BstXI	CCANNNNNNTGG	1 cut(s)	1308
BstYI	RGATCY	2 cut(s)	694, 1133
BsuI	GTATCC	1 cut(s)	1081
BsuRI	GGCC	2 cut(s)	456, 465
BtsCI	GGATG	1 cut(s)	166
CciI	TCATGA	2 cut(s)	784, 861
CfoI	GCGC	2 cut(s)	86, 439
Cfr13I	GGNCC	2 cut(s)	455, 1205
Csp6I	GTAC	6 cut(s)	334, 607, 764, 794, 1178, 1264
CviAII	CATG	5 cut(s)	179, 785, 862, 1181, 1216
CviQI	GTAC	6 cut(s)	334, 607, 764, 794, 1178, 1264
DdeI	CTNAG	3 cut(s)	621, 879, 966
DpnI	GATC	4 cut(s)	5, 696, 751, 1135
DpnII	GATC	4 cut(s)	3, 694, 749, 1133
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	539, 703
EarI	CTCTTC	2 cut(s)	539, 703
Eco47I	GGWCC	1 cut(s)	1205
Eco57I	CTGAAG	3 cut(s)	963, 1194, 1238
EcoNI	CCTNNNNNAGG	1 cut(s)	689
EcoRII	CCWGG	4 cut(s)	493, 532, 831, 1054
FaeI	CATG	5 cut(s)	182, 788, 865, 1184, 1219
FaqI	GGGAC	2 cut(s)	493, 1303
FatI	CATG	5 cut(s)	178, 784, 861, 1180, 1215
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	2 cut(s)	29, 1013
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	29, 1013
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	2 cut(s)	85, 438
GluI	GCNGC	2 cut(s)	29, 1013
HaeIII	GGCC	2 cut(s)	456, 465
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	2 cut(s)	86, 439
Hin1II	CATG	5 cut(s)	182, 788, 865, 1184, 1219
Hin6I	GCGC	2 cut(s)	84, 437
HinP1I	GCGC	2 cut(s)	84, 437
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	7 cut(s)	305, 431, 788, 877, 949, 1158, 1199
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	3 cut(s)	77, 222, 860
Hpy166II	GTNNAC	3 cut(s)	169, 334, 817
Hpy188I	TCNGA	7 cut(s)	622, 677, 828, 954, 1034, 1138, 1350
Hpy8I	GTNNAC	3 cut(s)	169, 334, 817
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	3 cut(s)	848, 872, 997
HpyCH4IV	ACGT	4 cut(s)	156, 796, 1150, 1341
HpyCH4V	TGCA	5 cut(s)	373, 475, 524, 777, 1270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 60, 462
HpyF3I	CTNAG	3 cut(s)	621, 879, 966
HpySE526I	ACGT	4 cut(s)	156, 796, 1150, 1341
Hsp92II	CATG	5 cut(s)	182, 788, 865, 1184, 1219
HspAI	GCGC	2 cut(s)	84, 437
Kpn2I	TCCGGA	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	3, 694, 749, 1133
LmnI	GCTCC	2 cut(s)	755, 1058
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	4 cut(s)	156, 796, 1150, 1341
MaeIII	GTNAC	3 cut(s)	505, 586, 1321
MalI	GATC	4 cut(s)	5, 696, 751, 1135
MbiI	CCGCTC	1 cut(s)	758
MboI	GATC	4 cut(s)	3, 694, 749, 1133
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	2 cut(s)	694, 1133
MhlI	GDGCHC	1 cut(s)	840
MlyI	GAGTC	2 cut(s)	871, 1152
MmeI	TCCRAC	4 cut(s)	172, 1014, 1029, 1045
MnlI	CCTC	8 cut(s)	127, 540, 544, 685, 695, 704, 710, 985
MroI	TCCGGA	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	4 cut(s)	153, 411, 906, 1115
MslI	CAYNNNNRTG	2 cut(s)	641, 1306
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	4 cut(s)	495, 534, 833, 1056
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	4 cut(s)	495, 534, 833, 1056
MvnI	CGCG	4 cut(s)	54, 63, 86, 439
MwoI	GCNNNNNNNGC	3 cut(s)	28, 60, 462
NdeII	GATC	4 cut(s)	3, 694, 749, 1133
NlaIII	CATG	5 cut(s)	182, 788, 865, 1184, 1219
NlaIV	GGNNCC	3 cut(s)	634, 837, 1053
NmuCI	GTSAC	2 cut(s)	505, 586
PagI	TCATGA	2 cut(s)	784, 861
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	5 cut(s)	305, 431, 788, 949, 1199
PkrI	GCNGC	2 cut(s)	30, 1014
PleI	GAGTC	2 cut(s)	871, 1152
PpsI	GAGTC	2 cut(s)	871, 1152
Ppu21I	YACGTR	1 cut(s)	1151
PshBI	ATTAAT	1 cut(s)	906
PsiI	TTATAA	1 cut(s)	1296
Psp6I	CCWGG	4 cut(s)	493, 532, 831, 1054
PspGI	CCWGG	4 cut(s)	493, 532, 831, 1054
PspN4I	GGNNCC	3 cut(s)	634, 837, 1053
PspPI	GGNCC	2 cut(s)	455, 1205
PsrI	GAACNNNNNNTAC	2 cut(s)	1131, 1163
PsuI	RGATCY	2 cut(s)	694, 1133
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	6 cut(s)	335, 608, 765, 795, 1179, 1265
RsaNI	GTAC	6 cut(s)	334, 607, 764, 794, 1178, 1264
RseI	CAYNNNNRTG	2 cut(s)	641, 1306
SaqAI	TTAA	4 cut(s)	153, 411, 906, 1115
SatI	GCNGC	2 cut(s)	29, 1013
Sau3AI	GATC	4 cut(s)	3, 694, 749, 1133
Sau96I	GGNCC	2 cut(s)	455, 1205
ScaI	AGTACT	1 cut(s)	1265
SchI	GAGTC	2 cut(s)	871, 1152
ScrFI	CCNGG	4 cut(s)	495, 534, 833, 1056
SduI	GDGCHC	1 cut(s)	840
SfcI	CTRYAG	1 cut(s)	733
SfiI	GGCCNNNNNGGCC	1 cut(s)	462
SinI	GGWCC	1 cut(s)	1205
SmiMI	CAYNNNNRTG	2 cut(s)	641, 1306
SmlI	CTYRAG	1 cut(s)	1103
SmoI	CTYRAG	1 cut(s)	1103
SsiI	CCGC	5 cut(s)	52, 63, 86, 758, 1013
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	493, 532, 831, 1054
TaaI	ACNGT	3 cut(s)	848, 872, 997
TaiI	ACGT	4 cut(s)	159, 799, 1153, 1344
TaqI	TCGA	2 cut(s)	573, 977
TatI	WGTACW	2 cut(s)	1177, 1263
TauI	GCSGC	1 cut(s)	1015
TfiI	GAWTC	5 cut(s)	305, 431, 788, 949, 1199
Tru1I	TTAA	4 cut(s)	153, 411, 906, 1115
Tru9I	TTAA	4 cut(s)	153, 411, 906, 1115
TseFI	GTSAC	2 cut(s)	505, 586
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	2 cut(s)	505, 586
VpaK11BI	GGWCC	1 cut(s)	1205
VspI	ATTAAT	1 cut(s)	906
XagI	CCTNNNNNAGG	1 cut(s)	689
XapI	RAATTY	3 cut(s)	319, 555, 851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.