Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Reverse (-)

56379862 .. 56380759

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGGCCAAGTCTTTTTGTTCTTCAAGTTGGCCATTGCGAACTGAAAACGGAACTCCATCGCATTCGCCCGACGTTGACTTCTACTCCCACCTCAACTCCGGCGATTGAAGCTCCACAGAAGCTTAGTGAGCAAATCTGCAGTTGCGGCTTGTGTTACTATCGTATATGGATGATCAAGAAGGATTTGGAAGCCCGGAGGTGCAGGACAATGGCCACTGCTACCGGAGATGCTGTTGAAGTGGGTGGAGAAGCCAAGCGCACCAAGGAGATAACCAAGAGCTACGCAGTTGGCTGCAGCGCCTCCGCCTCCGAGGATGATGACTCGGGGGGGGGGGCTAATGAGCGTGGGGGTAGGAAGAGAGAGGAGATTTTTGTGGACAAAATTGAGAATACGGGTGTCACATTCGGTTCCGGTGGGTATATACTTATTTCTGAAATTGATGGTACTATTCAATTAAAGAGTTATCTCGACGAGCAATCCGGACATTCAACTTGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006605 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0030117 GO:0030119 GO:0030124 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072657 GO:0090160 GO:0097708 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

167

Amino Acids

18.16

Weight (kDa)

5.96

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	482
AciI	CCGC	2 cut(s)	147, 306
AcoI	YGGCCR	2 cut(s)	31, 213
AfaI	GTAC	1 cut(s)	448
AgsI	TTSAA	5 cut(s)	26, 110, 239, 455, 492
AluBI	AGCT	3 cut(s)	113, 124, 282
AluI	AGCT	3 cut(s)	113, 124, 282
Ama87I	CYCGRG	1 cut(s)	325
Aor13HI	TCCGGA	1 cut(s)	482
AoxI	GGCC	3 cut(s)	5, 31, 213
ApeKI	GCWGC	2 cut(s)	294, 297
AspLEI	GCGC	2 cut(s)	261, 302
AsuC2I	CCSGG	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	325
BalI	TGGCCA	2 cut(s)	33, 215
BbvI	GCAGC	2 cut(s)	281, 309
BccI	CCATC	2 cut(s)	66, 437
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	196
BfmI	CTRYAG	2 cut(s)	139, 295
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	3 cut(s)	148, 295, 298
BlsI	GCNGC	3 cut(s)	149, 296, 299
Bme1390I	CCNGG	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	264, 312
BsaWI	WCCGGW	3 cut(s)	224, 413, 482
BsaXI	ACNNNNNCTCC	6 cut(s)	70, 82, 100, 112, 219, 249
Bse3DI	GCAATG	1 cut(s)	34
BseAI	TCCGGA	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	264, 312
BseGI	GGATG	2 cut(s)	177, 322
BseMI	GCAATG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	281, 309
BsgI	GTGCAG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	7, 33, 215
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	5 cut(s)	101, 196, 225, 414, 483
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	7, 33, 215
BsoBI	CYCGRG	1 cut(s)	325
Bsp13I	TCCGGA	1 cut(s)	482
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	147, 306
BspANI	GGCC	3 cut(s)	7, 33, 215
BspEI	TCCGGA	1 cut(s)	482
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	2 cut(s)	143, 299
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	264, 312
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	177, 322
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	261, 302
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 130, 147
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	2 cut(s)	139, 295
BstV1I	GCAGC	2 cut(s)	281, 309
BsuRI	GGCC	3 cut(s)	7, 33, 215
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	177, 322
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
CfoI	GCGC	2 cut(s)	261, 302
Csp6I	GTAC	1 cut(s)	447
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	2 cut(s)	31, 213
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaiI	YATR	5 cut(s)	167, 169, 423, 425, 502
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	148, 295, 298
FokI	GGATG	2 cut(s)	184, 329
Fsp4HI	GCNGC	3 cut(s)	148, 295, 298
GlaI	GCGC	2 cut(s)	260, 301
GluI	GCNGC	3 cut(s)	148, 295, 298
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	7, 33, 215
HapII	CCGG	5 cut(s)	101, 196, 225, 414, 483
HhaI	GCGC	2 cut(s)	261, 302
Hin6I	GCGC	2 cut(s)	259, 300
HinP1I	GCGC	2 cut(s)	259, 300
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	5 cut(s)	101, 196, 225, 414, 483
Hpy166II	GTNNAC	2 cut(s)	78, 379
Hpy188I	TCNGA	2 cut(s)	313, 436
Hpy188III	TCNNGA	3 cut(s)	178, 470, 483
Hpy8I	GTNNAC	2 cut(s)	78, 379
Hpy99I	CGWCG	2 cut(s)	76, 476
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	141, 204, 297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 130, 147
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	74
HspAI	GCGC	2 cut(s)	259, 300
Kpn2I	TCCGGA	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	6 cut(s)	114, 190, 209, 238, 427, 496
Lsp1109I	GCAGC	2 cut(s)	281, 309
LweI	GCATC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	155, 400
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	14, 370
MlsI	TGGCCA	2 cut(s)	33, 215
MluCI	AATT	3 cut(s)	384, 438, 455
MluNI	TGGCCA	2 cut(s)	33, 215
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	6 cut(s)	103, 192, 307, 313, 319, 358
Mox20I	TGGCCA	2 cut(s)	33, 215
MroI	TCCGGA	1 cut(s)	482
MscI	TGGCCA	2 cut(s)	33, 215
MseI	TTAA	1 cut(s)	458
Msp20I	TGGCCA	2 cut(s)	33, 215
MspI	CCGG	5 cut(s)	101, 196, 225, 414, 483
MspR9I	CCNGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	110, 130, 147
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	400
PctI	GAATGC	1 cut(s)	63
PkrI	GCNGC	3 cut(s)	149, 296, 299
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	412
PstI	CTGCAG	2 cut(s)	143, 299
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	3 cut(s)	148, 295, 298
Sau3AI	GATC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	6 cut(s)	77, 95, 115, 126, 203, 284
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	139, 295
Sse9I	AATT	3 cut(s)	384, 438, 455
SsiI	CCGC	2 cut(s)	147, 306
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	384, 438, 455
TauI	GCSGC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	2 cut(s)	294, 297
Tsp45I	GTSAC	1 cut(s)	400
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.