FvH4_2g39370

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28288570 .. 28293155
4586 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39370.t1

Sequence Viewer

Length: 1350 bp
ATGATTTCCCAGTTCTTTGTTCTATCTCAGAGAGGCGACAATATCGTCTTCCGTGACTATCGGGGTGAAGTACCGAAGGGGAGTGCGGAGATTTTCTTCAGGAAGGTTAAGTTCTGGAAGGAGGATGGAGAAGGGGACTCGCCACCTGTCTTTAATGTGGACGGTGTGAACTATTTTCACGTGAAGGAAGCTGGATTGTTGTTTGTTGCGACGACGAGAGTGAATGTGTCGCCTTCTCTGGTTTTGGAACTTTTGAGGAGGATTGCGCGAGTCGTTAAAGATTACCTTGGGGTTCTTAGTGAAGAATCGTTGCGAAAGAACTTTGTGCTTGTGTATGAGTTGCTGGACCAAGTGATTGATTTTGGTTTTGTGCAAACTACTTCGACTGAGGTTTTGAAGTCGTATGTGTTCAATGAGCCAATTGCGGTTAATGCTGATCATATACAACCCCTTGGTCCTGCTGCGATTTTTATGGCCAAAAGAATGCCTATGACAACTATCGCAAAATCGGTTTTAGCAAATGAGCGTGGTGGTAGGAAGAGAGAGGAGATTTTTGTGGACATAATTGAGAATCTGAGTGTCACATTCAGTTCTAGCGGATATATACTTACTTCTGAAATTGATGGCACTATTCAATTGAAGAGTTATCTGACAGGCAATCCAGACATTCGACTTGCTCTCAATGAGGAAGTGAGTATAGGAAGGGAAGGAGGGTCAAGTTATGATTATGGTAGTCCTTTTGGATCAGGACCTGTTATACTTGATGATTGTAACTTCCATGAATCTGTACGTCTTGATAATTTTGACGTTGACAGAACACTGACACTGGGATCAACAGATGGTGAATTTCCTGTCATGAATTACCGCATAACTCAGGAATTCAAGCTTCCCTTTCGTATTAATGTGTTAATTGAAGAATCAGGGTCCCTTAAGGCTGAAGTGACTATTAAAGTGCATGCTGAATTCCCATCAAGCATCATTGCAGAAAAAATTATGGTGCAGCTGCCGGTGCCTCCATACACAACTAGGGTTAGTTTTGAGTTGGAACCTGGAGCAGTTGGAAACACAACCGACTTCAAGGGAGCAAACAAGAGAATCGAATGGGGTTTAAAGAAGATCATTGGTGGATCTGAACATACTTTACATGCAAAGCTGACATTTGCACAGGAATTACATGGAAATATTACCAAGGAAGCTGGACCTGTGAGCATGACCTTCACAATACCCATGTACAATGCTTCAAGGCTTCAGGTAAAATACTTGCATATATCAAAGAAGTCAAAGAGCTATAATCCGTACAGATGGGTGAGATACGTCACACAATCAAATTCCTATGTTGCTCGGTTATGA

Protein Analysis

450

Amino Acids

50.43

Weight (kDa)

6.49

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 180 - 449 2e-72 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 1009
AccII CGCG 1 cut(s) 268
AciI CCGC 4 cut(s) 86, 425, 597, 865
AclWI GGATC 3 cut(s) 751, 838, 1135
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 4 cut(s) 845, 878, 962, 1327
AcuI CTGAAG 3 cut(s) 82, 957, 1232
AcvI CACGTG 1 cut(s) 181
AfaI GTAC 4 cut(s) 72, 789, 1232, 1298
AflII CTTAAG 1 cut(s) 929
AgsI TTSAA 8 cut(s) 397, 412, 635, 640, 883, 914, 1078, 1242
AjnI CCWGG 1 cut(s) 1048
AluBI AGCT 6 cut(s) 191, 886, 1003, 1153, 1196, 1287
AluI AGCT 6 cut(s) 191, 886, 1003, 1153, 1196, 1287
AlwI GGATC 3 cut(s) 751, 838, 1135
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 3 cut(s) 461, 1000, 1003
ApoI RAATTY 4 cut(s) 845, 878, 962, 1327
ArsI GACNNNNNNTTYG 2 cut(s) 376, 408
AseI ATTAAT 1 cut(s) 900
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 5 cut(s) 346, 455, 749, 924, 1199
AsuHPI GGTGA 3 cut(s) 77, 854, 1318
AvaII GGWCC 5 cut(s) 346, 455, 749, 924, 1199
BalI TGGCCA 1 cut(s) 476
BanI GGYRCC 1 cut(s) 1009
BbrPI CACGTG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 3 cut(s) 448, 990, 1012
BccI CCATC 5 cut(s) 119, 617, 833, 976, 1296
BciT130I CCWGG 1 cut(s) 1050
BclI TGATCA 1 cut(s) 436
BfaI CTAG 2 cut(s) 594, 1026
BfrI CTTAAG 1 cut(s) 929
BisI GCNGC 3 cut(s) 462, 1001, 1004
BlsI GCNGC 3 cut(s) 463, 1002, 1005
Bme1390I CCNGG 1 cut(s) 1050
Bme18I GGWCC 5 cut(s) 346, 455, 749, 924, 1199
BmgT120I GGNCC 5 cut(s) 346, 455, 749, 924, 1199
BmiI GGNNCC 4 cut(s) 925, 926, 1011, 1047
BmrFI CCNGG 1 cut(s) 1050
BmrI ACTGGG 2 cut(s) 4, 836
BmsI GCATC 1 cut(s) 984
BmuI ACTGGG 2 cut(s) 4, 836
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 1071
BsaAI YACGTR 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 286, 451, 1188
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 2 cut(s) 10, 831
Bse3DI GCAATG 1 cut(s) 978
BseBI CCWGG 1 cut(s) 1050
BseDI CCNNGG 3 cut(s) 286, 451, 1188
BseGI GGATG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 4 cut(s) 41, 378, 566, 887
BseNI ACTGG 2 cut(s) 10, 831
BseRI GAGGAG 2 cut(s) 271, 560
BseXI GCAGC 3 cut(s) 448, 990, 1012
BsgI GTGCAG 1 cut(s) 1019
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 1009
BsiSI CCGG 1 cut(s) 1007
BslFI GGGAC 2 cut(s) 149, 910
BsmFI GGGAC 2 cut(s) 149, 910
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 1230
Bsp143I GATC 5 cut(s) 436, 743, 830, 1116, 1127
BspACI CCGC 4 cut(s) 86, 425, 597, 865
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 4 cut(s) 40, 379, 567, 886
BspFNI CGCG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 4 cut(s) 925, 926, 1011, 1047
BspPI GGATC 3 cut(s) 751, 838, 1135
BspT107I GGYRCC 1 cut(s) 1009
BspTI CTTAAG 1 cut(s) 929
BsrDI GCAATG 1 cut(s) 978
BsrFI RCCGGY 1 cut(s) 1006
BsrGI TGTACA 1 cut(s) 1230
BsrI ACTGG 2 cut(s) 10, 831
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 3 cut(s) 286, 451, 1188
BssMI GATC 5 cut(s) 436, 743, 830, 1116, 1127
BssT1I CCWWGG 3 cut(s) 286, 451, 1188
Bst2UI CCWGG 1 cut(s) 1050
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 2 cut(s) 533, 635
BstAFI CTTAAG 1 cut(s) 929
BstAUI TGTACA 1 cut(s) 1230
BstBAI YACGTR 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 957
BstDEI CTNAG 5 cut(s) 27, 296, 387, 575, 873
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 5 cut(s) 439, 746, 833, 1119, 1130
BstMBI GATC 5 cut(s) 436, 743, 830, 1116, 1127
BstMWI GCNNNNNNNGC 2 cut(s) 431, 1009
BstNI CCWGG 1 cut(s) 1050
BstNSI RCATGY 2 cut(s) 959, 1148
BstSCI CCNGG 1 cut(s) 1048
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 448, 990, 1012
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 1127
BstYI RGATCY 1 cut(s) 1127
BsuRI GGCC 1 cut(s) 476
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 818, 824
Cac8I GCNNGC 1 cut(s) 957
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 1 cut(s) 855
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 5 cut(s) 346, 455, 749, 924, 1199
Csp6I GTAC 4 cut(s) 71, 788, 1231, 1297
CviAII CATG 7 cut(s) 779, 856, 956, 1145, 1175, 1210, 1228
CviQI GTAC 4 cut(s) 71, 788, 1231, 1297
DdeI CTNAG 5 cut(s) 27, 296, 387, 575, 873
DpnI GATC 5 cut(s) 438, 745, 832, 1118, 1129
DpnII GATC 5 cut(s) 436, 743, 830, 1116, 1127
DraI TTTAAA 1 cut(s) 1110
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 2 cut(s) 533, 635
EarI CTCTTC 2 cut(s) 533, 635
Eco130I CCWWGG 3 cut(s) 286, 451, 1188
Eco47I GGWCC 5 cut(s) 346, 455, 749, 924, 1199
Eco57I CTGAAG 3 cut(s) 82, 957, 1232
Eco72I CACGTG 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 749, 924
EcoRI GAATTC 2 cut(s) 878, 962
EcoRII CCWGG 1 cut(s) 1048
EcoT14I CCWWGG 3 cut(s) 286, 451, 1188
ErhI CCWWGG 3 cut(s) 286, 451, 1188
FaeI CATG 7 cut(s) 782, 859, 959, 1148, 1178, 1213, 1231
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 875, 907
FaqI GGGAC 2 cut(s) 149, 910
FatI CATG 7 cut(s) 778, 855, 955, 1144, 1174, 1209, 1227
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 462, 1001, 1004
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 462, 1001, 1004
FspBI CTAG 2 cut(s) 594, 1026
GlaI GCGC 1 cut(s) 267
GluI GCNGC 3 cut(s) 462, 1001, 1004
GsuI CTGGAG 1 cut(s) 1071
HaeIII GGCC 1 cut(s) 476
HapII CCGG 1 cut(s) 1007
HhaI GCGC 1 cut(s) 268
Hin1II CATG 7 cut(s) 782, 859, 959, 1148, 1178, 1213, 1231
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 7 cut(s) 137, 270, 305, 571, 782, 917, 1095
HpaII CCGG 1 cut(s) 1007
HphI GGTGA 3 cut(s) 77, 854, 1318
Hpy166II GTNNAC 4 cut(s) 160, 169, 559, 811
Hpy188I TCNGA 5 cut(s) 30, 576, 616, 651, 1132
Hpy188III TCNNGA 7 cut(s) 100, 115, 662, 747, 794, 856, 875
Hpy8I GTNNAC 4 cut(s) 160, 169, 559, 811
Hpy99I CGWCG 2 cut(s) 214, 217
HpyAV CCTTC 9 cut(s) 70, 97, 112, 125, 178, 243, 696, 701, 1225
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 4 cut(s) 180, 790, 807, 1314
HpyCH4V TGCA 7 cut(s) 373, 955, 983, 1000, 1148, 1163, 1264
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 1009
HpyF3I CTNAG 5 cut(s) 27, 296, 387, 575, 873
HpySE526I ACGT 4 cut(s) 180, 790, 807, 1314
Hsp92II CATG 7 cut(s) 782, 859, 959, 1148, 1178, 1213, 1231
HspAI GCGC 1 cut(s) 266
KflI GGGWCCC 1 cut(s) 924
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 5 cut(s) 436, 743, 830, 1116, 1127
LmnI GCTCC 2 cut(s) 1052, 1082
Lsp1109I GCAGC 3 cut(s) 448, 990, 1012
LweI GCATC 1 cut(s) 984
MaeI CTAG 2 cut(s) 594, 1026
MaeII ACGT 4 cut(s) 180, 790, 807, 1314
MaeIII GTNAC 5 cut(s) 53, 580, 770, 940, 1315
MalI GATC 5 cut(s) 438, 745, 832, 1118, 1129
MboI GATC 5 cut(s) 436, 743, 830, 1116, 1127
MboII GAAGA 7 cut(s) 40, 88, 314, 550, 652, 926, 1126
MfeI CAATTG 2 cut(s) 420, 635
MflI RGATCY 1 cut(s) 1127
MlsI TGGCCA 1 cut(s) 476
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 2 cut(s) 131, 279
MmeI TCCRAC 2 cut(s) 1023, 1039
MnlI CCTC 9 cut(s) 26, 115, 249, 252, 382, 538, 679, 704, 1023
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
MseI TTAA 9 cut(s) 108, 153, 276, 429, 900, 908, 930, 948, 1109
Msp20I TGGCCA 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 1003
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 1 cut(s) 1007
MspR9I CCNGG 1 cut(s) 1050
MunI CAATTG 2 cut(s) 420, 635
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 1 cut(s) 1050
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 431, 1009
NdeII GATC 5 cut(s) 436, 743, 830, 1116, 1127
NlaIII CATG 7 cut(s) 782, 859, 959, 1148, 1178, 1213, 1231
NlaIV GGNNCC 4 cut(s) 925, 926, 1011, 1047
NmuCI GTSAC 4 cut(s) 53, 580, 940, 1315
NspI RCATGY 2 cut(s) 959, 1148
PaeI GCATGC 1 cut(s) 959
PagI TCATGA 1 cut(s) 855
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 5 cut(s) 305, 571, 782, 917, 1095
PkrI GCNGC 3 cut(s) 463, 1002, 1005
PleI GAGTC 2 cut(s) 131, 278
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 2 cut(s) 131, 278
Ppu21I YACGTR 1 cut(s) 181
PpuMI RGGWCCY 2 cut(s) 749, 924
PshBI ATTAAT 1 cut(s) 900
Psp5II RGGWCCY 2 cut(s) 749, 924
Psp6I CCWGG 1 cut(s) 1048
PspCI CACGTG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 1048
PspN4I GGNNCC 4 cut(s) 925, 926, 1011, 1047
PspPI GGNCC 5 cut(s) 346, 455, 749, 924, 1199
PspPPI RGGWCCY 2 cut(s) 749, 924
PsrI GAACNNNNNNTAC 2 cut(s) 1125, 1157
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 1127
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 4 cut(s) 72, 789, 1232, 1298
RsaNI GTAC 4 cut(s) 71, 788, 1231, 1297
SaqAI TTAA 9 cut(s) 108, 153, 276, 429, 900, 908, 930, 948, 1109
SatI GCNGC 3 cut(s) 462, 1001, 1004
Sau3AI GATC 5 cut(s) 436, 743, 830, 1116, 1127
Sau96I GGNCC 5 cut(s) 346, 455, 749, 924, 1199
SchI GAGTC 2 cut(s) 131, 279
ScrFI CCNGG 1 cut(s) 1050
SfaNI GCATC 1 cut(s) 984
SinI GGWCC 5 cut(s) 346, 455, 749, 924, 1199
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
SphI GCATGC 1 cut(s) 959
SsiI CCGC 4 cut(s) 86, 425, 597, 865
SspI AATATT 1 cut(s) 1183
SspMI CTAG 2 cut(s) 594, 1026
StyD4I CCNGG 1 cut(s) 1048
StyI CCWWGG 3 cut(s) 286, 451, 1188
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 4 cut(s) 183, 793, 810, 1317
TaqI TCGA 3 cut(s) 383, 670, 1098
TatI WGTACW 1 cut(s) 1230
TfiI GAWTC 5 cut(s) 305, 571, 782, 917, 1095
Tru1I TTAA 9 cut(s) 108, 153, 276, 429, 900, 908, 930, 948, 1109
Tru9I TTAA 9 cut(s) 108, 153, 276, 429, 900, 908, 930, 948, 1109
TscAI CASTG 2 cut(s) 825, 831
TseFI GTSAC 4 cut(s) 53, 580, 940, 1315
TseI GCWGC 3 cut(s) 461, 1000, 1003
Tsp45I GTSAC 4 cut(s) 53, 580, 940, 1315
TspDTI ATGAA 2 cut(s) 795, 872
TspGWI ACGGA 2 cut(s) 41, 1284
TspRI CASTG 2 cut(s) 825, 831
Vha464I CTTAAG 1 cut(s) 929
VpaK11BI GGWCC 5 cut(s) 346, 455, 749, 924, 1199
VspI ATTAAT 1 cut(s) 900
XapI RAATTY 4 cut(s) 845, 878, 962, 1327
XceI RCATGY 2 cut(s) 959, 1148
XspI CTAG 2 cut(s) 594, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.