Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Forward (+)

7888935 .. 7893731

Gene Structure 4797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAGACATACGAATAAGGTTGCATATGAATTGCTGGAATTTATTGTTTGTTCTGATGTTTTTGGTGGGATGTGTGAAAAGAACGTGGATGGTGTGAACTATTTTCACGTGAAGGAAGCTGGACTGTTCTTTGCTGCGACGACGAGAGTGAATGTGTCGCCTTCTCTGGTTTTGGAACTTTTGAGAAGGATTGCGAGAGTCATTAAAGATTACCTTGGGGTTCTTAGTGAAGAATCGTTGCGAAAAAACTTTGTGCTTGTGTATGAGTTGCTGGACCAAGTTATTGATTTTGGTTTTGTGCAAACAACTTCAACTGAGGTTTTGAAGTCGTATGTGTTCAATGAGCCGTTTGCAGTTGCTGCTGACCATTTACAACCCCTTGGTCCTGCCGCAATTTTTATGGCCAAAAGAATGCCTGTGACAACTATCACAAAATCTGTTGTAGCTAATGAGCGTGGGGGTAGGAAGAGAGAGGAGATTTTTGTGGACATAATTGAGAATCTGAGTGTCACATTCAGTTCCAGTGGTTATATACTTACTTCTGAAATTGATGGTACTATTCAATTGAAGAGTTATCTGACAGGCAATCCAGACATTCGACTTGCTCTTAATGAGGAAGTGAGTATAGGAAGAGATGGAGGGTCAACTTATGATTATGGTAGTTCGTTTGGATCAGGGCCTGTTATACTAGATGATTGTAACTTCCATGAATCTGTACGTCTTGACAATTTTGACGTTAACAGAACACTGACACTGGGTTCAACAGATGGTGAATTTCCTATCATGAATTACCGCATAACTCAGGAATTCAAGCCTCCCTTTCGTATTAATGCGTTTGTTGAAGAATCAGGGCGCCTTAAGGCTGAAGTGACTATCAAAGTGCATGCTGAATTCCCATCGAGCATCACTGCAGATAAAATTATGGTGCAGCTACCGGTGCCACCATATACAACCAAGGTTAGTTTTGAGTTGGAACCTGAAGCAGTTGGAAACACAACCGATTTCAAGGAAGCAAACAAGAGAATTGAATGGGGTTTAAAGAAGATCGTTGGTGGATCTGAACATACTTTACATGCAAAGCTGACATTTGCACAGGAATTACGTGGAAATATTACCAAGGAAGTTGGACCTGTGAGCATGACATTCACAATACCCATGTACAATGCTTCAAGGCTTCAGGTAAAATACTTGCATATAACAAAGAAGTCGAAGAGCTATAATCCATATAGATGGGTGAGATACGTCACACAGTCAAATTCCTATGTTGCTCGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006605 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0030117 GO:0030119 GO:0030124 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072657 GO:0090160 GO:0097708 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

426

Amino Acids

47.77

Weight (kDa)

6.49

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	156 - 425	2.4e-72	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	852, 937
AciI	CCGC	2 cut(s)	390, 793
AclWI	GGATC	2 cut(s)	679, 1063
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	5 cut(s)	38, 773, 806, 890, 1255
AcuI	CTGAAG	3 cut(s)	885, 999, 1160
AcvI	CACGTG	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	853
AfaI	GTAC	3 cut(s)	556, 717, 1160
AflII	CTTAAG	1 cut(s)	857
AgeI	ACCGGT	1 cut(s)	934
AluBI	AGCT	5 cut(s)	119, 446, 931, 1081, 1215
AluI	AGCT	5 cut(s)	119, 446, 931, 1081, 1215
AlwI	GGATC	2 cut(s)	679, 1063
AlwNI	CAGNNNCTG	2 cut(s)	359, 680
AoxI	GGCC	2 cut(s)	402, 677
ApeKI	GCWGC	3 cut(s)	134, 359, 928
ApoI	RAATTY	5 cut(s)	38, 773, 806, 890, 1255
AseI	ATTAAT	1 cut(s)	828
AsiGI	ACCGGT	1 cut(s)	934
AspLEI	GCGC	1 cut(s)	855
AspS9I	GGNCC	4 cut(s)	274, 383, 677, 1127
AsuHPI	GGTGA	2 cut(s)	782, 1246
AvaII	GGWCC	3 cut(s)	274, 383, 1127
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	2 cut(s)	852, 937
BbrPI	CACGTG	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	121, 346, 940
BccI	CCATC	6 cut(s)	83, 545, 629, 761, 904, 1224
BceAI	ACGGC	1 cut(s)	331
BfaI	CTAG	1 cut(s)	689
BfmI	CTRYAG	1 cut(s)	909
BfoI	RGCGCY	1 cut(s)	856
BfrI	CTTAAG	1 cut(s)	857
BisI	GCNGC	4 cut(s)	135, 360, 390, 929
BlsI	GCNGC	4 cut(s)	136, 361, 391, 930
Bme18I	GGWCC	3 cut(s)	274, 383, 1127
BmgT120I	GGNCC	4 cut(s)	274, 383, 677, 1127
BmiI	GGNNCC	3 cut(s)	854, 939, 975
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	1 cut(s)	912
BmuI	ACTGGG	1 cut(s)	764
BsaAI	YACGTR	2 cut(s)	109, 1103
BsaHI	GRCGYC	1 cut(s)	853
BsaJI	CCNNGG	4 cut(s)	214, 379, 954, 1116
BsaWI	WCCGGW	1 cut(s)	934
Bse118I	RCCGGY	1 cut(s)	934
Bse1I	ACTGG	2 cut(s)	522, 759
BseDI	CCNNGG	4 cut(s)	214, 379, 954, 1116
BseGI	GGATG	2 cut(s)	75, 94
BseMII	CTCAG	3 cut(s)	306, 494, 815
BseNI	ACTGG	2 cut(s)	522, 759
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	121, 346, 940
BsgI	GTGCAG	1 cut(s)	947
BshFI	GGCC	2 cut(s)	404, 679
BshNI	GGYRCC	2 cut(s)	852, 937
BshTI	ACCGGT	1 cut(s)	934
BsiSI	CCGG	1 cut(s)	935
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	404, 679
Bsp1407I	TGTACA	1 cut(s)	1158
Bsp143I	GATC	3 cut(s)	671, 1044, 1055
BspACI	CCGC	2 cut(s)	390, 793
BspANI	GGCC	2 cut(s)	404, 679
BspCNI	CTCAG	3 cut(s)	307, 495, 814
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	3 cut(s)	854, 939, 975
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	2 cut(s)	679, 1063
BspQI	GCTCTTC	1 cut(s)	1205
BspT107I	GGYRCC	2 cut(s)	852, 937
BspTI	CTTAAG	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	934
BsrGI	TGTACA	1 cut(s)	1158
BsrI	ACTGG	2 cut(s)	522, 759
BssAI	RCCGGY	1 cut(s)	934
BssECI	CCNNGG	4 cut(s)	214, 379, 954, 1116
BssMI	GATC	3 cut(s)	671, 1044, 1055
BssNI	GRCGYC	1 cut(s)	853
BssT1I	CCWWGG	4 cut(s)	214, 379, 954, 1116
Bst4CI	ACNGT	2 cut(s)	126, 1251
Bst6I	CTCTTC	4 cut(s)	461, 563, 625, 1205
BstACI	GRCGYC	1 cut(s)	853
BstAFI	CTTAAG	1 cut(s)	857
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstAUI	TGTACA	1 cut(s)	1158
BstBAI	YACGTR	2 cut(s)	109, 1103
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	4 cut(s)	224, 315, 503, 801
BstF5I	GGATG	2 cut(s)	75, 94
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	855
BstKTI	GATC	3 cut(s)	674, 1047, 1058
BstMBI	GATC	3 cut(s)	671, 1044, 1055
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 937
BstNSI	RCATGY	2 cut(s)	887, 1076
BstSFI	CTRYAG	1 cut(s)	909
BstV1I	GCAGC	3 cut(s)	121, 346, 940
BstX2I	RGATCY	1 cut(s)	1055
BstXI	CCANNNNNNTGG	1 cut(s)	1230
BstYI	RGATCY	1 cut(s)	1055
BsuRI	GGCC	2 cut(s)	404, 679
BtsCI	GGATG	2 cut(s)	75, 94
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	4 cut(s)	529, 746, 752, 906
Cac8I	GCNNGC	1 cut(s)	885
CaiI	CAGNNNCTG	2 cut(s)	359, 680
CciI	TCATGA	1 cut(s)	783
CfoI	GCGC	1 cut(s)	855
Cfr10I	RCCGGY	1 cut(s)	934
Cfr13I	GGNCC	4 cut(s)	274, 383, 677, 1127
Csp6I	GTAC	3 cut(s)	555, 716, 1159
CspAI	ACCGGT	1 cut(s)	934
CviAII	CATG	6 cut(s)	707, 784, 884, 1073, 1138, 1156
CviQI	GTAC	3 cut(s)	555, 716, 1159
DdeI	CTNAG	4 cut(s)	224, 315, 503, 801
DinI	GGCGCC	1 cut(s)	854
DpnI	GATC	3 cut(s)	673, 1046, 1057
DpnII	GATC	3 cut(s)	671, 1044, 1055
DraI	TTTAAA	1 cut(s)	1038
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	4 cut(s)	461, 563, 625, 1205
EarI	CTCTTC	4 cut(s)	461, 563, 625, 1205
Eco130I	CCWWGG	4 cut(s)	214, 379, 954, 1116
Eco47I	GGWCC	3 cut(s)	274, 383, 1127
Eco57I	CTGAAG	3 cut(s)	885, 999, 1160
Eco72I	CACGTG	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRI	GAATTC	2 cut(s)	806, 890
EcoT14I	CCWWGG	4 cut(s)	214, 379, 954, 1116
EgeI	GGCGCC	1 cut(s)	854
EheI	GGCGCC	1 cut(s)	854
ErhI	CCWWGG	4 cut(s)	214, 379, 954, 1116
FaeI	CATG	6 cut(s)	710, 787, 887, 1076, 1141, 1159
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 803, 835
FatI	CATG	6 cut(s)	706, 783, 883, 1072, 1137, 1155
FauNDI	CATATG	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	135, 360, 390, 929
FokI	GGATG	2 cut(s)	82, 101
Fsp4HI	GCNGC	4 cut(s)	135, 360, 390, 929
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	1 cut(s)	854
GluI	GCNGC	4 cut(s)	135, 360, 390, 929
HaeII	RGCGCY	1 cut(s)	856
HaeIII	GGCC	2 cut(s)	404, 679
HapII	CCGG	1 cut(s)	935
HhaI	GCGC	1 cut(s)	855
Hin1I	GRCGYC	1 cut(s)	853
Hin1II	CATG	6 cut(s)	710, 787, 887, 1076, 1141, 1159
Hin6I	GCGC	1 cut(s)	853
HinP1I	GCGC	1 cut(s)	853
HincII	GTYRAC	2 cut(s)	645, 739
HindII	GTYRAC	2 cut(s)	645, 739
HinfI	GANTC	5 cut(s)	198, 233, 499, 710, 845
HpaI	GTTAAC	1 cut(s)	739
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	2 cut(s)	782, 1246
Hpy166II	GTNNAC	4 cut(s)	97, 487, 645, 739
Hpy188I	TCNGA	5 cut(s)	55, 504, 544, 579, 1060
Hpy188III	TCNNGA	4 cut(s)	590, 722, 784, 803
Hpy8I	GTNNAC	4 cut(s)	97, 487, 645, 739
Hpy99I	CGWCG	2 cut(s)	142, 145
HpyAV	CCTTC	3 cut(s)	106, 171, 180
HpyCH4III	ACNGT	2 cut(s)	126, 1251
HpyCH4IV	ACGT	6 cut(s)	84, 108, 718, 735, 1102, 1242
HpyCH4V	TGCA	9 cut(s)	23, 301, 353, 883, 911, 928, 1076, 1091, 1192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 937
HpyF3I	CTNAG	4 cut(s)	224, 315, 503, 801
HpySE526I	ACGT	6 cut(s)	84, 108, 718, 735, 1102, 1242
Hsp92I	GRCGYC	1 cut(s)	853
Hsp92II	CATG	6 cut(s)	710, 787, 887, 1076, 1141, 1159
HspAI	GCGC	1 cut(s)	853
KasI	GGCGCC	1 cut(s)	852
KspAI	GTTAAC	1 cut(s)	739
Kzo9I	GATC	3 cut(s)	671, 1044, 1055
LguI	GCTCTTC	1 cut(s)	1205
Lsp1109I	GCAGC	3 cut(s)	121, 346, 940
LweI	GCATC	1 cut(s)	912
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	6 cut(s)	84, 108, 718, 735, 1102, 1242
MaeIII	GTNAC	5 cut(s)	418, 508, 698, 868, 1243
MalI	GATC	3 cut(s)	673, 1046, 1057
MboI	GATC	3 cut(s)	671, 1044, 1055
MboII	GAAGA	7 cut(s)	242, 478, 580, 642, 854, 1054, 1222
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	1 cut(s)	1055
MlsI	TGGCCA	1 cut(s)	404
MluNI	TGGCCA	1 cut(s)	404
Mly113I	GGCGCC	1 cut(s)	853
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	3 cut(s)	951, 967, 1105
MnlI	CCTC	5 cut(s)	310, 466, 607, 632, 825
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	6 cut(s)	204, 609, 738, 828, 858, 1037
MslI	CAYNNNNRTG	1 cut(s)	1228
Msp20I	TGGCCA	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	1 cut(s)	935
MunI	CAATTG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	359, 937
NarI	GGCGCC	1 cut(s)	853
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	3 cut(s)	671, 1044, 1055
NlaIII	CATG	6 cut(s)	710, 787, 887, 1076, 1141, 1159
NlaIV	GGNNCC	3 cut(s)	854, 939, 975
NmuCI	GTSAC	4 cut(s)	418, 508, 868, 1243
NspI	RCATGY	2 cut(s)	887, 1076
PaeI	GCATGC	1 cut(s)	887
PagI	TCATGA	1 cut(s)	783
PciSI	GCTCTTC	1 cut(s)	1205
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	233, 499, 710, 845
PinAI	ACCGGT	1 cut(s)	934
PkrI	GCNGC	4 cut(s)	136, 361, 391, 930
PleI	GAGTC	1 cut(s)	206
PluTI	GGCGCC	1 cut(s)	856
PmaCI	CACGTG	1 cut(s)	109
PmlI	CACGTG	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	2 cut(s)	109, 1103
PshBI	ATTAAT	1 cut(s)	828
PspCI	CACGTG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	854, 939, 975
PspPI	GGNCC	4 cut(s)	274, 383, 677, 1127
PsrI	GAACNNNNNNTAC	2 cut(s)	1053, 1085
PstI	CTGCAG	1 cut(s)	913
PstNI	CAGNNNCTG	2 cut(s)	359, 680
PsuI	RGATCY	1 cut(s)	1055
RsaI	GTAC	3 cut(s)	556, 717, 1160
RsaNI	GTAC	3 cut(s)	555, 716, 1159
RseI	CAYNNNNRTG	1 cut(s)	1228
SapI	GCTCTTC	1 cut(s)	1205
SaqAI	TTAA	6 cut(s)	204, 609, 738, 828, 858, 1037
SatI	GCNGC	4 cut(s)	135, 360, 390, 929
Sau3AI	GATC	3 cut(s)	671, 1044, 1055
Sau96I	GGNCC	4 cut(s)	274, 383, 677, 1127
SchI	GAGTC	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	912
SfcI	CTRYAG	1 cut(s)	909
SfoI	GGCGCC	1 cut(s)	854
SinI	GGWCC	3 cut(s)	274, 383, 1127
SmiMI	CAYNNNNRTG	1 cut(s)	1228
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SphI	GCATGC	1 cut(s)	887
SsiI	CCGC	2 cut(s)	390, 793
SspDI	GGCGCC	1 cut(s)	852
SspI	AATATT	1 cut(s)	1111
SspMI	CTAG	1 cut(s)	689
StyI	CCWWGG	4 cut(s)	214, 379, 954, 1116
TaaI	ACNGT	2 cut(s)	126, 1251
TaiI	ACGT	6 cut(s)	87, 111, 721, 738, 1105, 1245
TaqI	TCGA	3 cut(s)	598, 899, 1208
TatI	WGTACW	1 cut(s)	1158
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	4 cut(s)	233, 499, 710, 845
Tru1I	TTAA	6 cut(s)	204, 609, 738, 828, 858, 1037
Tru9I	TTAA	6 cut(s)	204, 609, 738, 828, 858, 1037
TscAI	CASTG	4 cut(s)	529, 753, 759, 913
TseFI	GTSAC	4 cut(s)	418, 508, 868, 1243
TseI	GCWGC	3 cut(s)	134, 359, 928
Tsp45I	GTSAC	4 cut(s)	418, 508, 868, 1243
TspDTI	ATGAA	3 cut(s)	42, 723, 800
TspRI	CASTG	4 cut(s)	529, 753, 759, 913
Vha464I	CTTAAG	1 cut(s)	857
VpaK11BI	GGWCC	3 cut(s)	274, 383, 1127
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	5 cut(s)	38, 773, 806, 890, 1255
XceI	RCATGY	2 cut(s)	887, 1076
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.