Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Forward (+)

25973215 .. 25983905

Gene Structure 10691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35480.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGATCTCGCAGTTCTTCGTGCTTTCCCAGCGTGGCGATAATATCGTCTTCCGCGACTATCGCGGCGAAGTTCCGAAAGGAAGTGCTGAGATATTCTTCAGGAAAGTCAAGTTCTGGAAAGAAGACGGCCAAGAGGAAGCACCACCTGTCTTTAATGTGGATGGTGTCAACTACTTTCATGTGAAGGTCGTTGGACTCTTGTTTGTTGCAACTACAAGAGCTAATGTATCGCCATCAATTGTCTTGGAACTTCTACAAAGAATTGCCCGTGTCATCAAAGATTACGTTGGAGTTCTCAATGAGGATTCTATCAGGAAGAATTTTGTGCTTGTCTATGAGTTGCTTGATGAAGTCATAGATTTTGGCTTTGTGCAAACAACATCAACTGAACTGTTGAAGTCTTATATATTCAATGAGCCAATCGTCGTTGATGCTGCACGTTTATCATCTCTTGGATCTCCTGGCCTGTTTATGCAAGGGACAAAGAGAATGCCTGGAACAGCAGTCACAAAATCTGTTGTTGCTAATGAGCCTGGGGGTAGGAAGAGGGAGGAAATTTTTGTGGACATAATCGAGAAGATCAGTGTTACTTTCAGCTCTAGCGGGTATATATTGACTTCTGAGATTGATGGTACCATTCAAATGAAGAGCTATCTCACTGGTAATCCAGAAATCAGATTAGCTCTTAATGAGGACCTCGGCATTGGAAGAGGTGGAACATCGGCGTATGACTATAGGAGTTCATTTGGCTCGGGGGCAGTAATACTTGATGACTGCAATTTTCATGAATCTGTGCGTCTTGATAATTTTGATGTAGACAAAACTCTTACTCTGGTACCCCCGGATGGCGAATTTCCTGTCATGAACTACCGTATGACTCAGGAGTTTAAGCCTCCTTTTCGTATAAATGCTCTGATTGAAGAAGCAGGATCACTTAAGGCTGAAGTGATTCTGAAGCTATATGCTGAGTTCCCATCCAACATTACCGCAAACACTATTTCTGTACAAATGCCACTACCTAAATATACTACGAGAGCCAGTTTTGAGTTGGAACCAGGAGCAGTTGGACAATCAACAGATTTCAAGGAAGCAAATAAGAGGCTTGAATGGGGTTTAAAGAAGATTGTTGGTGGTTCCGAACATACCCTACGTGCCAGACTGACGTTTTCACAGGAATTTCATGGAAATATCACAAAAGAAGCTGGTCCAGTTAGCATGACGTTCACAATACCTATGTATAACTCTTCAAAACTTCAGGTAAAGTACTTGCAGATAGCTAAGAAGTCTGGAACTTATAATCCATATCGGTGGGTAAGATATGTTACTCTTGCCAATTCATATGTTGCTCGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

452

Amino Acids

50.55

Weight (kDa)

6.95

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	182 - 451	1.1e-74	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1296
Acc65I	GGTACC	2 cut(s)	632, 835
AccB1I	GGYRCC	2 cut(s)	632, 835
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	2 cut(s)	54, 63
AciI	CCGC	4 cut(s)	52, 63, 603, 987
AclWI	GGATC	2 cut(s)	463, 937
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	4 cut(s)	319, 555, 851, 1175
AcuI	CTGAAG	4 cut(s)	82, 963, 974, 1238
AfaI	GTAC	4 cut(s)	634, 837, 1005, 1265
AfiI	CCNNNNNNNGG	1 cut(s)	845
AflII	CTTAAG	1 cut(s)	935
AgsI	TTSAA	7 cut(s)	397, 412, 641, 920, 1084, 1106, 1248
AjnI	CCWGG	4 cut(s)	460, 493, 532, 1054
AloI	GAACNNNNNNTCC	2 cut(s)	1282, 1314
AluBI	AGCT	7 cut(s)	221, 597, 651, 683, 958, 1202, 1277
AluI	AGCT	7 cut(s)	221, 597, 651, 683, 958, 1202, 1277
AlwI	GGATC	2 cut(s)	463, 937
Ama87I	CYCGRG	1 cut(s)	751
AoxI	GGCC	2 cut(s)	127, 463
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	4 cut(s)	319, 555, 851, 1175
ArsI	GACNNNNNNTTYG	2 cut(s)	843, 875
Asp700I	GAANNNNTTC	1 cut(s)	948
Asp718I	GGTACC	2 cut(s)	632, 835
AspS9I	GGNCC	2 cut(s)	694, 1205
AsuC2I	CCSGG	1 cut(s)	842
AvaI	CYCGRG	1 cut(s)	751
AvaII	GGWCC	2 cut(s)	694, 1205
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BanI	GGYRCC	2 cut(s)	632, 835
BbsI	GAAGAC	2 cut(s)	40, 129
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	5 cut(s)	155, 241, 623, 839, 982
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	4 cut(s)	462, 495, 534, 1056
BcnI	CCSGG	1 cut(s)	842
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	733
BfrI	CTTAAG	1 cut(s)	935
BisI	GCNGC	2 cut(s)	64, 435
BlsI	GCNGC	2 cut(s)	65, 436
BmcAI	AGTACT	1 cut(s)	1265
Bme1390I	CCNGG	5 cut(s)	462, 495, 534, 842, 1056
Bme18I	GGWCC	2 cut(s)	694, 1205
BmeT110I	CYCGRG	1 cut(s)	751
BmgT120I	GGNCC	2 cut(s)	694, 1205
BmiI	GGNNCC	4 cut(s)	634, 837, 1053, 1135
BmrFI	CCNGG	5 cut(s)	462, 495, 534, 842, 1056
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	2 cut(s)	40, 129
BpuMI	CCSGG	1 cut(s)	842
BsaAI	YACGTR	1 cut(s)	1151
BsaJI	CCNNGG	3 cut(s)	533, 697, 840
Bsc4I	CCNNNNNNNGG	1 cut(s)	845
Bse1I	ACTGG	3 cut(s)	664, 1038, 1208
BseBI	CCWGG	4 cut(s)	462, 495, 534, 1056
BseDI	CCNNGG	3 cut(s)	533, 697, 840
BseGI	GGATG	3 cut(s)	166, 850, 974
BseLI	CCNNNNNNNGG	1 cut(s)	845
BseMII	CTCAG	4 cut(s)	78, 612, 893, 957
BseNI	ACTGG	3 cut(s)	664, 1038, 1208
BseXI	GCAGC	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	2 cut(s)	54, 63
BshFI	GGCC	2 cut(s)	129, 465
BshNI	GGYRCC	2 cut(s)	632, 835
BsiHKCI	CYCGRG	1 cut(s)	751
BsiSI	CCGG	1 cut(s)	842
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	845
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	129, 465
BsoBI	CYCGRG	1 cut(s)	751
Bsp1407I	TGTACA	1 cut(s)	1003
Bsp143I	GATC	4 cut(s)	3, 455, 579, 929
BspACI	CCGC	4 cut(s)	52, 63, 603, 987
BspANI	GGCC	2 cut(s)	129, 465
BspCNI	CTCAG	4 cut(s)	79, 613, 892, 958
BspFNI	CGCG	2 cut(s)	54, 63
BspHI	TCATGA	2 cut(s)	784, 861
BspLI	GGNNCC	4 cut(s)	634, 837, 1053, 1135
BspPI	GGATC	2 cut(s)	463, 937
BspQI	GCTCTTC	1 cut(s)	641
BspT107I	GGYRCC	2 cut(s)	632, 835
BspTI	CTTAAG	1 cut(s)	935
BsrGI	TGTACA	1 cut(s)	1003
BsrI	ACTGG	3 cut(s)	664, 1038, 1208
BssECI	CCNNGG	3 cut(s)	533, 697, 840
BssMI	GATC	4 cut(s)	3, 455, 579, 929
Bst2UI	CCWGG	4 cut(s)	462, 495, 534, 1056
Bst4CI	ACNGT	2 cut(s)	393, 872
Bst6I	CTCTTC	4 cut(s)	539, 641, 703, 1249
BstAFI	CTTAAG	1 cut(s)	935
BstAUI	TGTACA	1 cut(s)	1003
BstBAI	YACGTR	1 cut(s)	1151
BstDEI	CTNAG	5 cut(s)	87, 621, 879, 966, 1278
BstF5I	GGATG	3 cut(s)	166, 850, 974
BstFNI	CGCG	2 cut(s)	54, 63
BstKTI	GATC	4 cut(s)	6, 458, 582, 932
BstMBI	GATC	4 cut(s)	3, 455, 579, 929
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 60
BstNI	CCWGG	4 cut(s)	462, 495, 534, 1056
BstSCI	CCNGG	5 cut(s)	460, 493, 532, 840, 1054
BstSFI	CTRYAG	1 cut(s)	733
BstUI	CGCG	2 cut(s)	54, 63
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	2 cut(s)	40, 129
BstX2I	RGATCY	1 cut(s)	455
BstXI	CCANNNNNNTGG	1 cut(s)	1308
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	129, 465
BtsCI	GGATG	3 cut(s)	166, 850, 974
BtsIMutI	CAGTG	2 cut(s)	589, 657
CciI	TCATGA	2 cut(s)	784, 861
Cfr13I	GGNCC	2 cut(s)	694, 1205
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	4 cut(s)	633, 836, 1004, 1264
CviAII	CATG	5 cut(s)	179, 785, 862, 1181, 1216
CviQI	GTAC	4 cut(s)	633, 836, 1004, 1264
DdeI	CTNAG	5 cut(s)	87, 621, 879, 966, 1278
DpnI	GATC	4 cut(s)	5, 457, 581, 931
DpnII	GATC	4 cut(s)	3, 455, 579, 929
DraI	TTTAAA	1 cut(s)	1116
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	4 cut(s)	539, 641, 703, 1249
EarI	CTCTTC	4 cut(s)	539, 641, 703, 1249
Eco47I	GGWCC	2 cut(s)	694, 1205
Eco57I	CTGAAG	4 cut(s)	82, 963, 974, 1238
Eco88I	CYCGRG	1 cut(s)	751
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRII	CCWGG	4 cut(s)	460, 493, 532, 1054
FaeI	CATG	5 cut(s)	182, 788, 865, 1184, 1219
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	5 cut(s)	178, 784, 861, 1180, 1215
FauI	CCCGC	1 cut(s)	596
FauNDI	CATATG	1 cut(s)	1339
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	2 cut(s)	64, 435
FokI	GGATG	3 cut(s)	173, 857, 961
Fsp4HI	GCNGC	2 cut(s)	64, 435
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	2 cut(s)	64, 435
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	129, 465
HapII	CCGG	1 cut(s)	842
HgaI	GACGC	1 cut(s)	785
Hin1II	CATG	5 cut(s)	182, 788, 865, 1184, 1219
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	5 cut(s)	195, 305, 788, 877, 949
HpaII	CCGG	1 cut(s)	842
Hpy166II	GTNNAC	4 cut(s)	169, 565, 817, 1224
Hpy188I	TCNGA	6 cut(s)	75, 622, 677, 915, 954, 1138
Hpy8I	GTNNAC	4 cut(s)	169, 565, 817, 1224
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	393, 872
HpyCH4IV	ACGT	5 cut(s)	285, 439, 1150, 1163, 1220
HpyCH4V	TGCA	6 cut(s)	209, 373, 437, 475, 777, 1270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 60
HpyF3I	CTNAG	5 cut(s)	87, 621, 879, 966, 1278
HpySE526I	ACGT	5 cut(s)	285, 439, 1150, 1163, 1220
Hsp92II	CATG	5 cut(s)	182, 788, 865, 1184, 1219
KpnI	GGTACC	2 cut(s)	636, 839
Kzo9I	GATC	4 cut(s)	3, 455, 579, 929
LguI	GCTCTTC	1 cut(s)	641
LmnI	GCTCC	1 cut(s)	1058
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	5 cut(s)	285, 439, 1150, 1163, 1220
MaeIII	GTNAC	3 cut(s)	505, 586, 1321
MalI	GATC	4 cut(s)	5, 457, 581, 931
MboI	GATC	4 cut(s)	3, 455, 579, 929
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	455
MluCI	AATT	9 cut(s)	237, 261, 319, 555, 778, 805, 851, 1175, 1333
MlyI	GAGTC	2 cut(s)	189, 871
MmeI	TCCRAC	5 cut(s)	172, 268, 1002, 1029, 1045
MnlI	CCTC	9 cut(s)	127, 295, 540, 544, 685, 704, 707, 903, 1092
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	5 cut(s)	153, 687, 888, 936, 1115
MslI	CAYNNNNRTG	2 cut(s)	641, 1306
MspCI	CTTAAG	1 cut(s)	935
MspI	CCGG	1 cut(s)	842
MspR9I	CCNGG	5 cut(s)	462, 495, 534, 842, 1056
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	4 cut(s)	462, 495, 534, 1056
MvnI	CGCG	2 cut(s)	54, 63
MwoI	GCNNNNNNNGC	2 cut(s)	28, 60
NciI	CCSGG	1 cut(s)	842
NdeI	CATATG	1 cut(s)	1339
NdeII	GATC	4 cut(s)	3, 455, 579, 929
NlaIII	CATG	5 cut(s)	182, 788, 865, 1184, 1219
NlaIV	GGNNCC	4 cut(s)	634, 837, 1053, 1135
NmeAIII	GCCGAG	1 cut(s)	678
NmuCI	GTSAC	1 cut(s)	505
PagI	TCATGA	2 cut(s)	784, 861
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	3 cut(s)	305, 788, 949
PkrI	GCNGC	2 cut(s)	65, 436
PleI	GAGTC	2 cut(s)	189, 871
PpsI	GAGTC	2 cut(s)	189, 871
Ppu21I	YACGTR	1 cut(s)	1151
PpuMI	RGGWCCY	1 cut(s)	694
PsiI	TTATAA	1 cut(s)	1296
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	4 cut(s)	460, 493, 532, 1054
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	4 cut(s)	460, 493, 532, 1054
PspN4I	GGNNCC	4 cut(s)	634, 837, 1053, 1135
PspPI	GGNCC	2 cut(s)	694, 1205
PspPPI	RGGWCCY	1 cut(s)	694
PsrI	GAACNNNNNNTAC	2 cut(s)	1131, 1163
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	4 cut(s)	634, 837, 1005, 1265
RsaNI	GTAC	4 cut(s)	633, 836, 1004, 1264
RseI	CAYNNNNRTG	2 cut(s)	641, 1306
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	5 cut(s)	153, 687, 888, 936, 1115
SatI	GCNGC	2 cut(s)	64, 435
Sau3AI	GATC	4 cut(s)	3, 455, 579, 929
Sau96I	GGNCC	2 cut(s)	694, 1205
ScaI	AGTACT	1 cut(s)	1265
SchI	GAGTC	2 cut(s)	189, 871
ScrFI	CCNGG	5 cut(s)	462, 495, 534, 842, 1056
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	733
SinI	GGWCC	2 cut(s)	694, 1205
SmiMI	CAYNNNNRTG	2 cut(s)	641, 1306
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
Sse9I	AATT	9 cut(s)	237, 261, 319, 555, 778, 805, 851, 1175, 1333
SsiI	CCGC	4 cut(s)	52, 63, 603, 987
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	5 cut(s)	460, 493, 532, 840, 1054
TaaI	ACNGT	2 cut(s)	393, 872
TaiI	ACGT	5 cut(s)	288, 442, 1153, 1166, 1223
TaqI	TCGA	1 cut(s)	573
TasI	AATT	9 cut(s)	237, 261, 319, 555, 778, 805, 851, 1175, 1333
TatI	WGTACW	2 cut(s)	1003, 1263
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	305, 788, 949
Tru1I	TTAA	5 cut(s)	153, 687, 888, 936, 1115
Tru9I	TTAA	5 cut(s)	153, 687, 888, 936, 1115
TscAI	CASTG	2 cut(s)	589, 664
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	9 cut(s)	167, 363, 659, 732, 773, 801, 878, 1169, 1326
TspRI	CASTG	2 cut(s)	589, 664
Vha464I	CTTAAG	1 cut(s)	935
VpaK11BI	GGWCC	2 cut(s)	694, 1205
XapI	RAATTY	4 cut(s)	319, 555, 851, 1175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.