RchiOBHm_Chr7g0236861

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
61602130 .. 61608262
6133 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21226

Sequence Viewer

Length: 1338 bp
ATGATCTCGCAGTTCTTCGTGCTCTCCCAGCGTGGCGACAATATCGTCTTCCGCGACTATCGCGGCGAAGTGCCGAAAGGCAGTGCAGAGATATTTTTCAGGAAAGTGAAGTTCTGGAAAGAAGATGGGCAAGAGGAAGCACCACCTGTCTTTAACGTAGACGGCGTCAACTACTTTCATGTGAAGGTCGTTGGACTTTTGTTTGTTGCAACTACAAGAGCTAATGTATCGCCATCAATTGTCTTGGAACTTCTACAAAGAATTGCCCGTGTCATCAAAGATTATGTTGGAGTTCTCAATGAGGATTCTATCAGGAAGAATTTTGTGCTTGTCTATGAGTTGCTTGATGAAGTCATAGATTTCGGCTTTGTGCAAACAACATCAACTGAACTGTTGAAATCTTATATATTTAATGAGCCAATTGTTATTGATGCTGCACGTTTATCATCTCTTGGATCTACAGGCCTTTTTATGCAAGGGACAAAGAGAATGCCTGGAACAGCTGTCACAAAATCTGTTGTTGCTAATGAGCCTGGGGGTAGGAAGAGGGAGGAAATTTTTGTGGACATAATTGAGAAGATCAGTGTTACTTTCAGCTCTAGCGGGTACATTTTGACTTCTGAGATTGATGGTACCATTCAAATGAAGAGCTATCTCACTGGTAATCCAGAAATCCGATTAGCTCTTAATGAGGACCTCGGCATTGGAAGAGACTACAGGAGTTCATTTGGGTCGGGGGCAGTGATACTTGATGACTGCAATTTTCATGAATCTGTGCGTCTTGATAATTTTGATGTAGACAAAACTCTTACTCTGGTACCCCCAGATGGCGAGTTTCCTGTCATGAACTACCGTATGACTCAGGAGTTCAAGCCTCCTTTTCGTATTAATGCTCTGATTGAAGAAGCAGGATCGCTTAAGGCTGAAGTGATTCTGAAACTATATGCTGAATTCCCATCAAACATTACTGCAAACACCATTTCTGTACAAATGCCACTACCTAAATATACTATGAGAGCCAGTTTTGAGTTGGAACCAGGTGCTGTTGGACAAACAACAGATTTCAAGGAAGCAAATAAGAGACTTGAATGGGGTTTAAAGAAGATTGTTGGTGGATCCGAACATACCCTACGTGCCAGGCTGACATTTTCACAGGAATTTCATGGAAATATCACAAAAGAAGCTGGTCCAGTTAGCATGACGTTCACGATACCCATGTATAACTCTTCAAAACTTCAGGTAAAATACTTGCAGATAGCAAAGAAGTCTGGAACTTATAATCCATATCGGTGGGTAAGATATGTTACTCTCGCCAATTCATACGTTGCTCGTATATGA

Protein Analysis

445

Amino Acids

50.08

Weight (kDa)

6.95

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 182 - 445 1.4e-74 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1278
AasI GACNNNNNNGTC 1 cut(s) 44
Acc65I GGTACC 2 cut(s) 632, 817
AccB1I GGYRCC 2 cut(s) 632, 817
AccI GTMKAC 2 cut(s) 159, 798
AccII CGCG 2 cut(s) 54, 63
AciI CCGC 3 cut(s) 52, 63, 603
AclWI GGATC 4 cut(s) 463, 919, 1110, 1123
AcsI RAATTY 4 cut(s) 319, 555, 950, 1157
AcuI CTGAAG 2 cut(s) 945, 1220
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 4 cut(s) 608, 634, 819, 987
AfiI CCNNNNNNNGG 1 cut(s) 827
AflII CTTAAG 1 cut(s) 917
AgsI TTSAA 7 cut(s) 397, 641, 871, 902, 1066, 1088, 1230
AjnI CCWGG 4 cut(s) 493, 532, 1036, 1136
AloI GAACNNNNNNTCC 2 cut(s) 1264, 1296
AluBI AGCT 6 cut(s) 221, 503, 597, 651, 683, 1184
AluI AGCT 6 cut(s) 221, 503, 597, 651, 683, 1184
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 705, 1075
AlwI GGATC 4 cut(s) 463, 919, 1110, 1123
AlwNI CAGNNNCTG 1 cut(s) 1043
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 4 cut(s) 319, 555, 950, 1157
AseI ATTAAT 1 cut(s) 888
Asp700I GAANNNNTTC 1 cut(s) 930
Asp718I GGTACC 2 cut(s) 632, 817
AspS9I GGNCC 2 cut(s) 694, 1187
AvaII GGWCC 2 cut(s) 694, 1187
BaeI ACNNNNGTAYC 4 cut(s) 801, 834, 1202, 1235
BamHI GGATCC 1 cut(s) 1115
BanI GGYRCC 2 cut(s) 632, 817
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 421
BccI CCATC 5 cut(s) 119, 241, 623, 821, 964
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 4 cut(s) 495, 534, 1038, 1138
BcoDI GTCTC 2 cut(s) 705, 1075
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 2 cut(s) 459, 715
BfrI CTTAAG 1 cut(s) 917
BisI GCNGC 2 cut(s) 64, 435
BlsI GCNGC 2 cut(s) 65, 436
Bme1390I CCNGG 4 cut(s) 495, 534, 1038, 1138
Bme18I GGWCC 2 cut(s) 694, 1187
BmgT120I GGNCC 2 cut(s) 694, 1187
BmiI GGNNCC 4 cut(s) 634, 819, 1035, 1117
BmrFI CCNGG 4 cut(s) 495, 534, 1038, 1138
BmsI GCATC 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 1133
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 533, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse1I ACTGG 3 cut(s) 664, 1020, 1190
BseBI CCWGG 4 cut(s) 495, 534, 1038, 1138
BseDI CCNNGG 2 cut(s) 533, 697
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMII CTCAG 2 cut(s) 612, 875
BseNI ACTGG 3 cut(s) 664, 1020, 1190
BseXI GCAGC 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 27
BsgI GTGCAG 2 cut(s) 105, 420
Bsh1236I CGCG 2 cut(s) 54, 63
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 2 cut(s) 632, 817
BsiHKAI GWGCWC 1 cut(s) 24
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 2 cut(s) 705, 1075
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 985
Bsp143I GATC 5 cut(s) 3, 455, 579, 911, 1115
BspACI CCGC 3 cut(s) 52, 63, 603
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 2 cut(s) 613, 874
BspFNI CGCG 2 cut(s) 54, 63
BspHI TCATGA 2 cut(s) 766, 843
BspLI GGNNCC 4 cut(s) 634, 819, 1035, 1117
BspPI GGATC 4 cut(s) 463, 919, 1110, 1123
BspQI GCTCTTC 1 cut(s) 641
BspT107I GGYRCC 2 cut(s) 632, 817
BspTI CTTAAG 1 cut(s) 917
BsrGI TGTACA 1 cut(s) 985
BsrI ACTGG 3 cut(s) 664, 1020, 1190
BssECI CCNNGG 2 cut(s) 533, 697
BssMI GATC 5 cut(s) 3, 455, 579, 911, 1115
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 4 cut(s) 495, 534, 1038, 1138
Bst4CI ACNGT 2 cut(s) 393, 854
Bst6I CTCTTC 4 cut(s) 539, 641, 703, 1231
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 917
BstAUI TGTACA 1 cut(s) 985
BstBAI YACGTR 1 cut(s) 1133
BstDEI CTNAG 2 cut(s) 621, 861
BstFNI CGCG 2 cut(s) 54, 63
BstKTI GATC 5 cut(s) 6, 458, 582, 914, 1118
BstMAI GTCTC 2 cut(s) 705, 1075
BstMBI GATC 5 cut(s) 3, 455, 579, 911, 1115
BstMWI GCNNNNNNNGC 2 cut(s) 28, 60
BstNI CCWGG 4 cut(s) 495, 534, 1038, 1138
BstSCI CCNGG 4 cut(s) 493, 532, 1036, 1136
BstSFI CTRYAG 2 cut(s) 459, 715
BstUI CGCG 2 cut(s) 54, 63
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 455, 1115
BstXI CCANNNNNNTGG 1 cut(s) 1290
BstYI RGATCY 2 cut(s) 455, 1115
BsuRI GGCC 1 cut(s) 465
BtsI GCAGTG 2 cut(s) 88, 747
BtsIMutI CAGTG 4 cut(s) 88, 589, 657, 747
CaiI CAGNNNCTG 1 cut(s) 1043
CciI TCATGA 2 cut(s) 766, 843
Cfr13I GGNCC 2 cut(s) 694, 1187
CseI GACGC 2 cut(s) 154, 767
CsiI ACCWGGT 1 cut(s) 1036
Csp6I GTAC 4 cut(s) 607, 633, 818, 986
CviAII CATG 6 cut(s) 179, 767, 844, 1163, 1198, 1216
CviQI GTAC 4 cut(s) 607, 633, 818, 986
DdeI CTNAG 2 cut(s) 621, 861
DpnI GATC 5 cut(s) 5, 457, 581, 913, 1117
DpnII GATC 5 cut(s) 3, 455, 579, 911, 1115
DraI TTTAAA 1 cut(s) 1098
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 4 cut(s) 539, 641, 703, 1231
EarI CTCTTC 4 cut(s) 539, 641, 703, 1231
Eco147I AGGCCT 1 cut(s) 465
Eco47I GGWCC 2 cut(s) 694, 1187
Eco57I CTGAAG 2 cut(s) 945, 1220
EcoO109I RGGNCCY 1 cut(s) 694
EcoRI GAATTC 1 cut(s) 950
EcoRII CCWGG 4 cut(s) 493, 532, 1036, 1136
FaeI CATG 6 cut(s) 182, 770, 847, 1166, 1201, 1219
FaqI GGGAC 1 cut(s) 493
FatI CATG 6 cut(s) 178, 766, 843, 1162, 1197, 1215
FauI CCCGC 1 cut(s) 596
FblI GTMKAC 2 cut(s) 159, 798
Fnu4HI GCNGC 2 cut(s) 64, 435
Fsp4HI GCNGC 2 cut(s) 64, 435
FspBI CTAG 1 cut(s) 600
GluI GCNGC 2 cut(s) 64, 435
GsaI CCCAGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 465
HgaI GACGC 2 cut(s) 154, 767
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 6 cut(s) 182, 770, 847, 1166, 1201, 1219
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 305, 770, 859, 931
Hpy166II GTNNAC 5 cut(s) 160, 169, 565, 799, 1206
Hpy188I TCNGA 5 cut(s) 622, 677, 897, 936, 1120
Hpy8I GTNNAC 5 cut(s) 160, 169, 565, 799, 1206
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 393, 854
HpyCH4IV ACGT 5 cut(s) 156, 439, 1132, 1202, 1323
HpyCH4V TGCA 8 cut(s) 86, 209, 373, 437, 475, 759, 971, 1252
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 60
HpyF3I CTNAG 2 cut(s) 621, 861
HpySE526I ACGT 5 cut(s) 156, 439, 1132, 1202, 1323
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 6 cut(s) 182, 770, 847, 1166, 1201, 1219
KpnI GGTACC 2 cut(s) 636, 821
Kzo9I GATC 5 cut(s) 3, 455, 579, 911, 1115
LguI GCTCTTC 1 cut(s) 641
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 1 cut(s) 421
MabI ACCWGGT 1 cut(s) 1036
MaeI CTAG 1 cut(s) 600
MaeII ACGT 5 cut(s) 156, 439, 1132, 1202, 1323
MaeIII GTNAC 3 cut(s) 505, 586, 1303
MalI GATC 5 cut(s) 5, 457, 581, 913, 1117
MboI GATC 5 cut(s) 3, 455, 579, 911, 1115
MfeI CAATTG 2 cut(s) 237, 420
MflI RGATCY 2 cut(s) 455, 1115
MhlI GDGCHC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 853
MmeI TCCRAC 4 cut(s) 172, 268, 1011, 1027
MnlI CCTC 7 cut(s) 127, 295, 540, 544, 685, 707, 885
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 6 cut(s) 153, 411, 687, 888, 918, 1097
MslI CAYNNNNRTG 2 cut(s) 641, 1288
MspA1I CMGCKG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 917
MspR9I CCNGG 4 cut(s) 495, 534, 1038, 1138
MunI CAATTG 2 cut(s) 237, 420
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 4 cut(s) 495, 534, 1038, 1138
MvnI CGCG 2 cut(s) 54, 63
MwoI GCNNNNNNNGC 2 cut(s) 28, 60
NdeII GATC 5 cut(s) 3, 455, 579, 911, 1115
NlaIII CATG 6 cut(s) 182, 770, 847, 1166, 1201, 1219
NlaIV GGNNCC 4 cut(s) 634, 819, 1035, 1117
NmeAIII GCCGAG 1 cut(s) 678
NmuCI GTSAC 1 cut(s) 505
PagI TCATGA 2 cut(s) 766, 843
PceI AGGCCT 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 162
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 3 cut(s) 305, 770, 931
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 65, 436
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
Ppu21I YACGTR 1 cut(s) 1133
PpuMI RGGWCCY 1 cut(s) 694
PshBI ATTAAT 1 cut(s) 888
PsiI TTATAA 1 cut(s) 1278
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 4 cut(s) 493, 532, 1036, 1136
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 4 cut(s) 493, 532, 1036, 1136
PspN4I GGNNCC 4 cut(s) 634, 819, 1035, 1117
PspPI GGNCC 2 cut(s) 694, 1187
PspPPI RGGWCCY 1 cut(s) 694
PsrI GAACNNNNNNTAC 2 cut(s) 1113, 1145
PstNI CAGNNNCTG 1 cut(s) 1043
PsuI RGATCY 2 cut(s) 455, 1115
PsyI GACNNNGTC 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 4 cut(s) 608, 634, 819, 987
RsaNI GTAC 4 cut(s) 607, 633, 818, 986
RseI CAYNNNNRTG 2 cut(s) 641, 1288
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 6 cut(s) 153, 411, 687, 888, 918, 1097
SatI GCNGC 2 cut(s) 64, 435
Sau3AI GATC 5 cut(s) 3, 455, 579, 911, 1115
Sau96I GGNCC 2 cut(s) 694, 1187
SchI GAGTC 1 cut(s) 853
ScrFI CCNGG 4 cut(s) 495, 534, 1038, 1138
SduI GDGCHC 1 cut(s) 24
SexAI ACCWGGT 1 cut(s) 1036
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 2 cut(s) 459, 715
SinI GGWCC 2 cut(s) 694, 1187
SmiMI CAYNNNNRTG 2 cut(s) 641, 1288
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 3 cut(s) 52, 63, 603
SspMI CTAG 1 cut(s) 600
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 4 cut(s) 493, 532, 1036, 1136
TaaI ACNGT 2 cut(s) 393, 854
TaiI ACGT 5 cut(s) 159, 442, 1135, 1205, 1326
TatI WGTACW 1 cut(s) 985
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 3 cut(s) 305, 770, 931
Tru1I TTAA 6 cut(s) 153, 411, 687, 888, 918, 1097
Tru9I TTAA 6 cut(s) 153, 411, 687, 888, 918, 1097
TscAI CASTG 4 cut(s) 88, 589, 664, 747
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 9 cut(s) 167, 363, 659, 714, 755, 783, 860, 1151, 1308
TspRI CASTG 4 cut(s) 88, 589, 664, 747
Tth111I GACNNNGTC 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 917
VpaK11BI GGWCC 2 cut(s) 694, 1187
VspI ATTAAT 1 cut(s) 888
XapI RAATTY 4 cut(s) 319, 555, 950, 1157
XcmI CCANNNNNNNNNTGG 1 cut(s) 1027
XmiI GTMKAC 2 cut(s) 159, 798
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.