Rh6CG433300

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
61357392 .. 61361147
3756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG433300.1

Sequence Viewer

Length: 1356 bp
ATGATTTCTCAGTTCTTTGTTCTATCGCAGAGAGGCGATAATATCGTCTTCCGCGACTATCGCGGTGAAGTAGCGAAGGGCAGTGCGGAGATTTTCTTCCGCAAGGTGAAGTTTTGGAAGGAGGATGGAGAAGGGGAAGCGCCACCTGTCTTTAATGTGGATGGTGTTGGTGTGAACTATTTTCACGTGAAGGAAGCTGGACTGTTCTTTGTTGCGACGACGAGAGTGAATGTGTCGCCTTCTCTGGTTTTGGAACTTTTGAGAAGGATTGCGAGAGTCATTAAAGATTACCTTGGGGTTCTTAGTGAAGAATCGTTGCGAAAAAACTTTGTGCTTGTGTATGAGTTGCTGGACCAAGTTATTGATTTTGGTTTTGTGCAAACAACTTCAACTGAGGTTTTGAAGTCGTATGTGTTCAATGAGCCGATTGCGGTTGCTGCTGACCATTTACAACCCCTTGGTCCTGCCGCGATTTTTATGGCCAAAAGAATGCCTGTGGCAACTATCACAAAATCTGTTGTAGCTAATGAGCGTGGGGGTAGGAAGAGAGAGGAGATTTTTGTGGACATAATTGAGAATCTGAGTGTCACATTCAGTTCCAGTGGGTATATACTTACTTCTGAAATTGATGGTACTATTCAATTGAAGAGTTATCTGACAGGCAATCCAGACATTCGACTTGCTCTTAATGAGGAAGTGAGTATAGGAAGAGATGGAGGGTCAACTTATGATTATGGTAGTTCGCTTGGATCAGGGCCTGTCATACTAGATGATTGTAACTTCCATGAATCTGTACGTCTTAACAATTTTGATGTTGACAGAACACTGACACTGGGTTCAACAGATGGTGAATTTCCTATCATGAATTACCGCATAACTCAGGAATTCAAGCCTCCCTTTCGTATTAATGCATTAGTTGAAGAATCAGGGCGCCTTAAGGCTGAAGTGACTATCAAAGTGCATGCTGAATTCCCATCGAGCATCATTGCAGATAAAATTATGGTGCAGCTACCGGTGCCACCATATACAACCAAGGTTAGTTTTGAGTTGGAACCTGGAACAGTTGGAAACACAACCGATTTCAAGGAAGCAAACAAGAGAATTGAATGGGGTTTAAAGAAGATCGTTGGTGGATCTGAACATACTTTACATGCAAAGCTGACATTTGCACAGGAATTACGTGGAAATATTACCAAGGAAGCTGGACCTGTGAGCATGACATTCACAATACCCATGTACAATGCTTCAAGGCTTCAGGTAAAATACTTGCATATAACAAAGAAGTCGAAGAGCTATAATCCATATAGATGGGTGAGATACGTCACACAGTCAAATTCCTATGTTGCTCGGTTATAA

Protein Analysis

451

Amino Acids

50.58

Weight (kDa)

7.08

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 182 - 451 3.9e-73 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1354
AccB1I GGYRCC 2 cut(s) 930, 1015
AccII CGCG 3 cut(s) 54, 63, 470
AciI CCGC 7 cut(s) 52, 63, 86, 100, 431, 468, 871
AclWI GGATC 2 cut(s) 757, 1141
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 4 cut(s) 851, 884, 968, 1333
AcuI CTGAAG 2 cut(s) 963, 1238
AcvI CACGTG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 931
AfaI GTAC 3 cut(s) 634, 795, 1238
AflII CTTAAG 1 cut(s) 935
AgeI ACCGGT 1 cut(s) 1012
AjnI CCWGG 1 cut(s) 1054
AluBI AGCT 6 cut(s) 197, 524, 1009, 1159, 1202, 1293
AluI AGCT 6 cut(s) 197, 524, 1009, 1159, 1202, 1293
AlwI GGATC 2 cut(s) 757, 1141
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 2 cut(s) 480, 755
ApeKI GCWGC 2 cut(s) 437, 1006
ApoI RAATTY 4 cut(s) 851, 884, 968, 1333
AseI ATTAAT 1 cut(s) 906
AsiGI ACCGGT 1 cut(s) 1012
AspLEI GCGC 2 cut(s) 142, 933
AspS9I GGNCC 4 cut(s) 352, 461, 755, 1205
AsuHPI GGTGA 4 cut(s) 77, 118, 860, 1324
AvaII GGWCC 3 cut(s) 352, 461, 1205
BalI TGGCCA 1 cut(s) 482
BanI GGYRCC 2 cut(s) 930, 1015
BbrPI CACGTG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 424, 1018
BccI CCATC 7 cut(s) 119, 155, 623, 707, 839, 982, 1302
BciT130I CCWGG 1 cut(s) 1056
BfaI CTAG 1 cut(s) 767
BfoI RGCGCY 2 cut(s) 143, 934
BfrI CTTAAG 1 cut(s) 935
BisI GCNGC 3 cut(s) 438, 468, 1007
BlsI GCNGC 3 cut(s) 439, 469, 1008
Bme1390I CCNGG 1 cut(s) 1056
Bme18I GGWCC 3 cut(s) 352, 461, 1205
BmgT120I GGNCC 4 cut(s) 352, 461, 755, 1205
BmiI GGNNCC 3 cut(s) 932, 1017, 1053
BmrFI CCNGG 1 cut(s) 1056
BmrI ACTGGG 1 cut(s) 842
BmsI GCATC 1 cut(s) 990
BmuI ACTGGG 1 cut(s) 842
BpiI GAAGAC 1 cut(s) 40
BsaAI YACGTR 2 cut(s) 187, 1181
BsaHI GRCGYC 1 cut(s) 931
BsaJI CCNNGG 4 cut(s) 292, 457, 1032, 1194
BsaWI WCCGGW 1 cut(s) 1012
Bse118I RCCGGY 1 cut(s) 1012
Bse1I ACTGG 2 cut(s) 600, 837
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 1 cut(s) 1056
BseDI CCNNGG 4 cut(s) 292, 457, 1032, 1194
BseGI GGATG 2 cut(s) 130, 166
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 4 cut(s) 23, 384, 572, 893
BseNI ACTGG 2 cut(s) 600, 837
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 2 cut(s) 424, 1018
BsgI GTGCAG 1 cut(s) 1025
Bsh1236I CGCG 3 cut(s) 54, 63, 470
BshFI GGCC 2 cut(s) 482, 757
BshNI GGYRCC 2 cut(s) 930, 1015
BshTI ACCGGT 1 cut(s) 1012
BsiSI CCGG 1 cut(s) 1013
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 2 cut(s) 482, 757
Bsp1407I TGTACA 1 cut(s) 1236
Bsp143I GATC 3 cut(s) 749, 1122, 1133
BspACI CCGC 7 cut(s) 52, 63, 86, 100, 431, 468, 871
BspANI GGCC 2 cut(s) 482, 757
BspCNI CTCAG 4 cut(s) 22, 385, 573, 892
BspFNI CGCG 3 cut(s) 54, 63, 470
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 3 cut(s) 932, 1017, 1053
BspPI GGATC 2 cut(s) 757, 1141
BspQI GCTCTTC 1 cut(s) 1283
BspT107I GGYRCC 2 cut(s) 930, 1015
BspTI CTTAAG 1 cut(s) 935
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 1 cut(s) 1012
BsrGI TGTACA 1 cut(s) 1236
BsrI ACTGG 2 cut(s) 600, 837
BssAI RCCGGY 1 cut(s) 1012
BssECI CCNNGG 4 cut(s) 292, 457, 1032, 1194
BssMI GATC 3 cut(s) 749, 1122, 1133
BssNI GRCGYC 1 cut(s) 931
BssT1I CCWWGG 4 cut(s) 292, 457, 1032, 1194
Bst2UI CCWGG 1 cut(s) 1056
Bst4CI ACNGT 3 cut(s) 204, 1063, 1329
Bst6I CTCTTC 4 cut(s) 539, 641, 703, 1283
BstACI GRCGYC 1 cut(s) 931
BstAFI CTTAAG 1 cut(s) 935
BstAUI TGTACA 1 cut(s) 1236
BstBAI YACGTR 2 cut(s) 187, 1181
BstC8I GCNNGC 1 cut(s) 963
BstDEI CTNAG 5 cut(s) 9, 302, 393, 581, 879
BstF5I GGATG 2 cut(s) 130, 166
BstFNI CGCG 3 cut(s) 54, 63, 470
BstH2I RGCGCY 2 cut(s) 143, 934
BstHHI GCGC 2 cut(s) 142, 933
BstKTI GATC 3 cut(s) 752, 1125, 1136
BstMBI GATC 3 cut(s) 749, 1122, 1133
BstMWI GCNNNNNNNGC 3 cut(s) 60, 437, 1015
BstNI CCWGG 1 cut(s) 1056
BstNSI RCATGY 2 cut(s) 965, 1154
BstSCI CCNGG 1 cut(s) 1054
BstUI CGCG 3 cut(s) 54, 63, 470
BstV1I GCAGC 2 cut(s) 424, 1018
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 1133
BstXI CCANNNNNNTGG 1 cut(s) 1308
BstYI RGATCY 1 cut(s) 1133
BsuRI GGCC 2 cut(s) 482, 757
BtsCI GGATG 2 cut(s) 130, 166
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 4 cut(s) 88, 607, 824, 830
Cac8I GCNNGC 1 cut(s) 963
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 1 cut(s) 861
CfoI GCGC 2 cut(s) 142, 933
Cfr10I RCCGGY 1 cut(s) 1012
Cfr13I GGNCC 4 cut(s) 352, 461, 755, 1205
Csp6I GTAC 3 cut(s) 633, 794, 1237
CspAI ACCGGT 1 cut(s) 1012
CviAII CATG 6 cut(s) 785, 862, 962, 1151, 1216, 1234
CviQI GTAC 3 cut(s) 633, 794, 1237
DdeI CTNAG 5 cut(s) 9, 302, 393, 581, 879
DinI GGCGCC 1 cut(s) 932
DpnI GATC 3 cut(s) 751, 1124, 1135
DpnII GATC 3 cut(s) 749, 1122, 1133
DraI TTTAAA 1 cut(s) 1116
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 4 cut(s) 539, 641, 703, 1283
EarI CTCTTC 4 cut(s) 539, 641, 703, 1283
Eco130I CCWWGG 4 cut(s) 292, 457, 1032, 1194
Eco47I GGWCC 3 cut(s) 352, 461, 1205
Eco57I CTGAAG 2 cut(s) 963, 1238
Eco72I CACGTG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 755
EcoRI GAATTC 2 cut(s) 884, 968
EcoRII CCWGG 1 cut(s) 1054
EcoT14I CCWWGG 4 cut(s) 292, 457, 1032, 1194
EcoT22I ATGCAT 1 cut(s) 913
EgeI GGCGCC 1 cut(s) 932
EheI GGCGCC 1 cut(s) 932
ErhI CCWWGG 4 cut(s) 292, 457, 1032, 1194
FaeI CATG 6 cut(s) 788, 865, 965, 1154, 1219, 1237
FalI AAGNNNNNCTT 4 cut(s) 276, 308, 881, 913
FatI CATG 6 cut(s) 784, 861, 961, 1150, 1215, 1233
Fnu4HI GCNGC 3 cut(s) 438, 468, 1007
FokI GGATG 2 cut(s) 137, 173
Fsp4HI GCNGC 3 cut(s) 438, 468, 1007
FspBI CTAG 1 cut(s) 767
GlaI GCGC 2 cut(s) 141, 932
GluI GCNGC 3 cut(s) 438, 468, 1007
HaeII RGCGCY 2 cut(s) 143, 934
HaeIII GGCC 2 cut(s) 482, 757
HapII CCGG 1 cut(s) 1013
HhaI GCGC 2 cut(s) 142, 933
Hin1I GRCGYC 1 cut(s) 931
Hin1II CATG 6 cut(s) 788, 865, 965, 1154, 1219, 1237
Hin6I GCGC 2 cut(s) 140, 931
HinP1I GCGC 2 cut(s) 140, 931
HincII GTYRAC 2 cut(s) 723, 817
HindII GTYRAC 2 cut(s) 723, 817
HinfI GANTC 5 cut(s) 276, 311, 577, 788, 923
HpaII CCGG 1 cut(s) 1013
HphI GGTGA 4 cut(s) 77, 118, 860, 1324
Hpy166II GTNNAC 4 cut(s) 175, 565, 723, 817
Hpy188I TCNGA 4 cut(s) 582, 622, 657, 1138
Hpy188III TCNNGA 3 cut(s) 668, 862, 881
Hpy8I GTNNAC 4 cut(s) 175, 565, 723, 817
Hpy99I CGWCG 2 cut(s) 220, 223
HpyAV CCTTC 6 cut(s) 70, 112, 125, 184, 249, 258
HpyCH4III ACNGT 3 cut(s) 204, 1063, 1329
HpyCH4IV ACGT 4 cut(s) 186, 796, 1180, 1320
HpyCH4V TGCA 8 cut(s) 379, 911, 961, 989, 1006, 1154, 1169, 1270
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 437, 1015
HpyF3I CTNAG 5 cut(s) 9, 302, 393, 581, 879
HpySE526I ACGT 4 cut(s) 186, 796, 1180, 1320
Hsp92I GRCGYC 1 cut(s) 931
Hsp92II CATG 6 cut(s) 788, 865, 965, 1154, 1219, 1237
HspAI GCGC 2 cut(s) 140, 931
KasI GGCGCC 1 cut(s) 930
Kzo9I GATC 3 cut(s) 749, 1122, 1133
LguI GCTCTTC 1 cut(s) 1283
Lsp1109I GCAGC 2 cut(s) 424, 1018
LweI GCATC 1 cut(s) 990
MaeI CTAG 1 cut(s) 767
MaeII ACGT 4 cut(s) 186, 796, 1180, 1320
MaeIII GTNAC 4 cut(s) 586, 776, 946, 1321
MalI GATC 3 cut(s) 751, 1124, 1135
MboI GATC 3 cut(s) 749, 1122, 1133
MboII GAAGA 9 cut(s) 40, 88, 320, 556, 658, 720, 932, 1132, 1300
MfeI CAATTG 1 cut(s) 641
MflI RGATCY 1 cut(s) 1133
MlsI TGGCCA 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 482
Mly113I GGCGCC 1 cut(s) 931
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 2 cut(s) 1029, 1045
MnlI CCTC 7 cut(s) 26, 115, 388, 544, 685, 710, 903
Mox20I TGGCCA 1 cut(s) 482
Mph1103I ATGCAT 1 cut(s) 913
MscI TGGCCA 1 cut(s) 482
MseI TTAA 7 cut(s) 153, 282, 687, 801, 906, 936, 1115
MslI CAYNNNNRTG 1 cut(s) 1306
Msp20I TGGCCA 1 cut(s) 482
MspCI CTTAAG 1 cut(s) 935
MspI CCGG 1 cut(s) 1013
MspR9I CCNGG 1 cut(s) 1056
MunI CAATTG 1 cut(s) 641
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 1 cut(s) 1056
MvnI CGCG 3 cut(s) 54, 63, 470
MwoI GCNNNNNNNGC 3 cut(s) 60, 437, 1015
NarI GGCGCC 1 cut(s) 931
NdeII GATC 3 cut(s) 749, 1122, 1133
NlaIII CATG 6 cut(s) 788, 865, 965, 1154, 1219, 1237
NlaIV GGNNCC 3 cut(s) 932, 1017, 1053
NmuCI GTSAC 3 cut(s) 586, 946, 1321
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 2 cut(s) 965, 1154
PaeI GCATGC 1 cut(s) 965
PagI TCATGA 1 cut(s) 861
PciSI GCTCTTC 1 cut(s) 1283
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 4 cut(s) 311, 577, 788, 923
PinAI ACCGGT 1 cut(s) 1012
PkrI GCNGC 3 cut(s) 439, 469, 1008
PleI GAGTC 1 cut(s) 284
PluTI GGCGCC 1 cut(s) 934
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
PpsI GAGTC 1 cut(s) 284
Ppu21I YACGTR 2 cut(s) 187, 1181
PshBI ATTAAT 1 cut(s) 906
PsiI TTATAA 1 cut(s) 1354
Psp6I CCWGG 1 cut(s) 1054
PspCI CACGTG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 1054
PspN4I GGNNCC 3 cut(s) 932, 1017, 1053
PspPI GGNCC 4 cut(s) 352, 461, 755, 1205
PsrI GAACNNNNNNTAC 2 cut(s) 1131, 1163
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 1133
RsaI GTAC 3 cut(s) 634, 795, 1238
RsaNI GTAC 3 cut(s) 633, 794, 1237
RseI CAYNNNNRTG 1 cut(s) 1306
SapI GCTCTTC 1 cut(s) 1283
SaqAI TTAA 7 cut(s) 153, 282, 687, 801, 906, 936, 1115
SatI GCNGC 3 cut(s) 438, 468, 1007
Sau3AI GATC 3 cut(s) 749, 1122, 1133
Sau96I GGNCC 4 cut(s) 352, 461, 755, 1205
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 1056
SfaNI GCATC 1 cut(s) 990
SfoI GGCGCC 1 cut(s) 932
SinI GGWCC 3 cut(s) 352, 461, 1205
SmiMI CAYNNNNRTG 1 cut(s) 1306
SmlI CTYRAG 1 cut(s) 935
SmoI CTYRAG 1 cut(s) 935
SphI GCATGC 1 cut(s) 965
SsiI CCGC 7 cut(s) 52, 63, 86, 100, 431, 468, 871
SspDI GGCGCC 1 cut(s) 930
SspI AATATT 1 cut(s) 1189
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 1 cut(s) 1054
StyI CCWWGG 4 cut(s) 292, 457, 1032, 1194
TaaI ACNGT 3 cut(s) 204, 1063, 1329
TaiI ACGT 4 cut(s) 189, 799, 1183, 1323
TaqI TCGA 3 cut(s) 676, 977, 1286
TatI WGTACW 1 cut(s) 1236
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 4 cut(s) 311, 577, 788, 923
Tru1I TTAA 7 cut(s) 153, 282, 687, 801, 906, 936, 1115
Tru9I TTAA 7 cut(s) 153, 282, 687, 801, 906, 936, 1115
TscAI CASTG 4 cut(s) 88, 607, 831, 837
TseFI GTSAC 3 cut(s) 586, 946, 1321
TseI GCWGC 2 cut(s) 437, 1006
Tsp45I GTSAC 3 cut(s) 586, 946, 1321
TspDTI ATGAA 2 cut(s) 801, 878
TspRI CASTG 4 cut(s) 88, 607, 831, 837
Vha464I CTTAAG 1 cut(s) 935
VpaK11BI GGWCC 3 cut(s) 352, 461, 1205
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 4 cut(s) 851, 884, 968, 1333
XceI RCATGY 2 cut(s) 965, 1154
XspI CTAG 1 cut(s) 767
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.