Prupe.1G530400_v2.0.a1

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
43353578 .. 43361045
7468 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G530400.1

Sequence Viewer

Length: 1356 bp
ATGATCTCGCAGTTCTTCGTGCTCTCGCAGCGTGGCGATAACATCGTCTTCCGCGACTATCGCGGTGAAGTACCAAAAGGAAGTGCGGAGATATTTTTCCGGAAGGTGAAGTTTTGGAAAGAAGATGGGCAAGAGGAAGCACCACCTGTCTTTAATGTGGATGGTGTCAACTACTTTCATGTGAAGGTTGTTGGACTATTATTTGTTGCAACCACAAGAGCTAATGTATCGCCATCTCTTGTCTTGGAACTTCTTCAAAGAATTGCCCGTGTCATCAAAGATTATGTTGGAGTTCTCAATGAAGATTCTATAAGGAAGAATTTTGTGCTTGTGTACGAGTTGCTTGATGAAGTCATAGATTTTGGCTTTGTGCAAACAACATCAACTGAACTGTTGAAGTCTTATATCTTTAATGAGCCAATTATTCTTGATTCTGCACGTTTATCATCTATTGGCCCTACTGGCCTTTTTATGCAAGGGACAAAGAGAATGCCTGGAACAGCTGTCACAAAATCAGTTGTTGCAAGTGAACCTGGCGGTAGGAAGAGGGAGGAAATTTTTGTGGATATAATCGAGAAGATCAGTGTTACTTTTAGCTCTAGTGGGTACATACTGACTTCTGAGATTGATGGCACCATTCAAATGAAGAGCTATCTCACTGGCAATCCAGAAATCCGATTAGCTCTTAATGAGGACCTCAGCATAGGAAGAGGTGGAGGATCGGCATATGACTATAGGAGTTCCTTTGGCTCAGGAGCAGTGATACTTGATGATTGTAATTTTCATGAATCTGTGCGTCTTGATAATTTTGAAGTGGACAAAACTCTGACCCTGGTACCCCCTGATGGTGAATTTCCTGTCATGAACTACCGTATGACTCAGGAGTTCAAGCCTCCTTTTCGTATTAATGCTTTGATTGAAGAAGCAGGAGCGCTTAAGGCCGAAGTGATTCTGAAAATATTTGCTGAGTTCCCATCAAACATTACTTCAAACACAATTGCTGTACAAATGCCACTACCTAAATATACAATCAGAGCCAGTTTTGAGTTGGAACCAGGAGCAGTTGGGCAAACAACAGATTTCAAGGAAGCAAATAAGAGACTTGAATGGGGTTTAAAGAAGATTGTTGGTGGATCTGAACATACACTGCGTGCCAGACTGACCTTTTCACCGGAAGCACATGGAAATATAACAAAAGAATCTGGTCCAGTTAGCATGACATTTACAATACCTATGTATAATTCTTCAAGACTTCAGGTAAAGTACTTGCAGATAGCGAAGAAATCTGGAACTTATAATCCATATCGGTGGGTAAGATATGTCACGCTCGCCAATTCATATGTTGCTCGTATATGA

Protein Analysis

452

Amino Acids

50.51

Weight (kDa)

6.95

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1296
Acc65I GGTACC 1 cut(s) 835
AccB1I GGYRCC 2 cut(s) 632, 835
AccII CGCG 2 cut(s) 54, 63
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 4 cut(s) 52, 63, 86, 537
AclWI GGATC 2 cut(s) 727, 1141
AcsI RAATTY 3 cut(s) 319, 555, 851
AcuI CTGAAG 1 cut(s) 1238
AdeI CACNNNGTG 1 cut(s) 1151
AfaI GTAC 6 cut(s) 72, 335, 608, 837, 1005, 1265
AfeI AGCGCT 1 cut(s) 933
AfiI CCNNNNNNNGG 1 cut(s) 845
AflII CTTAAG 1 cut(s) 935
AjnI CCWGG 4 cut(s) 493, 532, 831, 1054
AloI GAACNNNNNNTCC 2 cut(s) 1282, 1314
AluBI AGCT 5 cut(s) 221, 503, 597, 651, 683
AluI AGCT 5 cut(s) 221, 503, 597, 651, 683
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 1093
AlwI GGATC 2 cut(s) 727, 1141
Aor13HI TCCGGA 1 cut(s) 99
Aor51HI AGCGCT 1 cut(s) 933
AoxI GGCC 3 cut(s) 454, 463, 939
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 319, 555, 851
AseI ATTAAT 1 cut(s) 906
Asp700I GAANNNNTTC 2 cut(s) 252, 948
Asp718I GGTACC 1 cut(s) 835
AspLEI GCGC 1 cut(s) 934
AspS9I GGNCC 3 cut(s) 455, 694, 1205
AsuHPI GGTGA 4 cut(s) 77, 118, 860, 1161
AvaII GGWCC 2 cut(s) 694, 1205
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BanI GGYRCC 2 cut(s) 632, 835
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 698
BbvI GCAGC 1 cut(s) 40
BccI CCATC 6 cut(s) 119, 155, 241, 623, 839, 982
BciT130I CCWGG 4 cut(s) 495, 534, 833, 1056
BcoDI GTCTC 1 cut(s) 1093
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 733
BfoI RGCGCY 1 cut(s) 935
BfrI CTTAAG 1 cut(s) 935
BglI GCCNNNNNGGC 1 cut(s) 462
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 1265
Bme1390I CCNGG 4 cut(s) 495, 534, 833, 1056
Bme18I GGWCC 2 cut(s) 694, 1205
BmgT120I GGNCC 3 cut(s) 455, 694, 1205
BmiI GGNNCC 3 cut(s) 634, 837, 1053
BmrFI CCNGG 4 cut(s) 495, 534, 833, 1056
BpiI GAAGAC 1 cut(s) 40
Bpu10I CCTNAGC 2 cut(s) 698, 751
BsaJI CCNNGG 1 cut(s) 831
BsaWI WCCGGW 2 cut(s) 99, 1171
Bsc4I CCNNNNNNNGG 1 cut(s) 845
Bse1I ACTGG 4 cut(s) 466, 664, 1038, 1208
BseAI TCCGGA 1 cut(s) 99
BseBI CCWGG 4 cut(s) 495, 534, 833, 1056
BseDI CCNNGG 1 cut(s) 831
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 845
BseMII CTCAG 5 cut(s) 612, 712, 765, 893, 957
BseNI ACTGG 4 cut(s) 466, 664, 1038, 1208
BseXI GCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 420
Bsh1236I CGCG 2 cut(s) 54, 63
BshFI GGCC 3 cut(s) 456, 465, 941
BshNI GGYRCC 2 cut(s) 632, 835
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 100, 1172
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 845
BsmAI GTCTC 1 cut(s) 1093
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 3 cut(s) 456, 465, 941
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 1003
Bsp143I GATC 4 cut(s) 3, 579, 719, 1133
BspACI CCGC 4 cut(s) 52, 63, 86, 537
BspANI GGCC 3 cut(s) 456, 465, 941
BspCNI CTCAG 5 cut(s) 613, 711, 764, 892, 958
BspEI TCCGGA 1 cut(s) 99
BspFNI CGCG 2 cut(s) 54, 63
BspHI TCATGA 2 cut(s) 784, 861
BspLI GGNNCC 3 cut(s) 634, 837, 1053
BspPI GGATC 2 cut(s) 727, 1141
BspQI GCTCTTC 1 cut(s) 641
BspT107I GGYRCC 2 cut(s) 632, 835
BspTI CTTAAG 1 cut(s) 935
BsrGI TGTACA 1 cut(s) 1003
BsrI ACTGG 4 cut(s) 466, 664, 1038, 1208
BssECI CCNNGG 1 cut(s) 831
BssMI GATC 4 cut(s) 3, 579, 719, 1133
Bst2UI CCWGG 4 cut(s) 495, 534, 833, 1056
Bst4CI ACNGT 2 cut(s) 393, 872
Bst6I CTCTTC 3 cut(s) 539, 641, 703
BstAFI CTTAAG 1 cut(s) 935
BstAUI TGTACA 1 cut(s) 1003
BstC8I GCNNGC 2 cut(s) 1152, 1329
BstDEI CTNAG 5 cut(s) 621, 698, 751, 879, 966
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 2 cut(s) 54, 63
BstH2I RGCGCY 1 cut(s) 935
BstHHI GCGC 1 cut(s) 934
BstKTI GATC 4 cut(s) 6, 582, 722, 1136
BstMAI GTCTC 1 cut(s) 1093
BstMBI GATC 4 cut(s) 3, 579, 719, 1133
BstMWI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
BstNI CCWGG 4 cut(s) 495, 534, 833, 1056
BstSCI CCNGG 4 cut(s) 493, 532, 831, 1054
BstSFI CTRYAG 1 cut(s) 733
BstUI CGCG 2 cut(s) 54, 63
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 1133
BstXI CCANNNNNNTGG 1 cut(s) 1308
BstYI RGATCY 1 cut(s) 1133
BsuRI GGCC 3 cut(s) 456, 465, 941
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 2 cut(s) 765, 1145
BtsIMutI CAGTG 4 cut(s) 589, 657, 765, 1145
Cac8I GCNNGC 2 cut(s) 1152, 1329
CciI TCATGA 2 cut(s) 784, 861
CfoI GCGC 1 cut(s) 934
Cfr13I GGNCC 3 cut(s) 455, 694, 1205
CseI GACGC 1 cut(s) 785
Csp6I GTAC 6 cut(s) 71, 334, 607, 836, 1004, 1264
CviAII CATG 5 cut(s) 179, 785, 862, 1181, 1216
CviQI GTAC 6 cut(s) 71, 334, 607, 836, 1004, 1264
DdeI CTNAG 5 cut(s) 621, 698, 751, 879, 966
DpnI GATC 4 cut(s) 5, 581, 721, 1135
DpnII GATC 4 cut(s) 3, 579, 719, 1133
DraI TTTAAA 1 cut(s) 1116
DraIII CACNNNGTG 1 cut(s) 1151
Eam1104I CTCTTC 3 cut(s) 539, 641, 703
EarI CTCTTC 3 cut(s) 539, 641, 703
Eco47I GGWCC 2 cut(s) 694, 1205
Eco47III AGCGCT 1 cut(s) 933
Eco57I CTGAAG 1 cut(s) 1238
EcoO109I RGGNCCY 1 cut(s) 694
EcoRII CCWGG 4 cut(s) 493, 532, 831, 1054
FaeI CATG 5 cut(s) 182, 788, 865, 1184, 1219
FaqI GGGAC 1 cut(s) 493
FatI CATG 5 cut(s) 178, 784, 861, 1180, 1215
FauNDI CATATG 2 cut(s) 727, 1339
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 600
GlaI GCGC 1 cut(s) 933
GluI GCNGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 935
HaeIII GGCC 3 cut(s) 456, 465, 941
HapII CCGG 2 cut(s) 100, 1172
HgaI GACGC 1 cut(s) 785
HhaI GCGC 1 cut(s) 934
Hin1II CATG 5 cut(s) 182, 788, 865, 1184, 1219
Hin6I GCGC 1 cut(s) 932
HinP1I GCGC 1 cut(s) 932
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 6 cut(s) 305, 431, 788, 877, 949, 1199
HpaII CCGG 2 cut(s) 100, 1172
HphI GGTGA 4 cut(s) 77, 118, 860, 1161
Hpy166II GTNNAC 4 cut(s) 169, 334, 530, 817
Hpy188I TCNGA 6 cut(s) 622, 677, 828, 954, 1034, 1138
Hpy8I GTNNAC 4 cut(s) 169, 334, 530, 817
HpyAV CCTTC 2 cut(s) 97, 178
HpyCH4III ACNGT 2 cut(s) 393, 872
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 6 cut(s) 209, 373, 437, 475, 524, 1270
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
HpyF3I CTNAG 5 cut(s) 621, 698, 751, 879, 966
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 5 cut(s) 182, 788, 865, 1184, 1219
HspAI GCGC 1 cut(s) 932
Kpn2I TCCGGA 1 cut(s) 99
KpnI GGTACC 1 cut(s) 839
Kzo9I GATC 4 cut(s) 3, 579, 719, 1133
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 3 cut(s) 755, 929, 1058
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 1 cut(s) 600
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 3 cut(s) 505, 586, 1321
MalI GATC 4 cut(s) 5, 581, 721, 1135
MboI GATC 4 cut(s) 3, 579, 719, 1133
MfeI CAATTG 1 cut(s) 996
MflI RGATCY 1 cut(s) 1133
MhlI GDGCHC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 871
MmeI TCCRAC 3 cut(s) 172, 268, 1029
MnlI CCTC 8 cut(s) 127, 540, 544, 685, 704, 707, 710, 903
MroI TCCGGA 1 cut(s) 99
MroXI GAANNNNTTC 2 cut(s) 252, 948
MseI TTAA 6 cut(s) 153, 411, 687, 906, 936, 1115
MslI CAYNNNNRTG 2 cut(s) 641, 1306
MspA1I CMGCKG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 935
MspI CCGG 2 cut(s) 100, 1172
MspR9I CCNGG 4 cut(s) 495, 534, 833, 1056
MunI CAATTG 1 cut(s) 996
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 4 cut(s) 495, 534, 833, 1056
MvnI CGCG 2 cut(s) 54, 63
MwoI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
NdeI CATATG 2 cut(s) 727, 1339
NdeII GATC 4 cut(s) 3, 579, 719, 1133
NlaIII CATG 5 cut(s) 182, 788, 865, 1184, 1219
NlaIV GGNNCC 3 cut(s) 634, 837, 1053
NmuCI GTSAC 2 cut(s) 505, 1321
PagI TCATGA 2 cut(s) 784, 861
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 2 cut(s) 252, 948
PfeI GAWTC 5 cut(s) 305, 431, 788, 949, 1199
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
PpuMI RGGWCCY 1 cut(s) 694
PshBI ATTAAT 1 cut(s) 906
PsiI TTATAA 1 cut(s) 1296
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 4 cut(s) 493, 532, 831, 1054
PspGI CCWGG 4 cut(s) 493, 532, 831, 1054
PspN4I GGNNCC 3 cut(s) 634, 837, 1053
PspPI GGNCC 3 cut(s) 455, 694, 1205
PspPPI RGGWCCY 1 cut(s) 694
PsuI RGATCY 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 6 cut(s) 72, 335, 608, 837, 1005, 1265
RsaNI GTAC 6 cut(s) 71, 334, 607, 836, 1004, 1264
RseI CAYNNNNRTG 2 cut(s) 641, 1306
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 6 cut(s) 153, 411, 687, 906, 936, 1115
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 4 cut(s) 3, 579, 719, 1133
Sau96I GGNCC 3 cut(s) 455, 694, 1205
ScaI AGTACT 1 cut(s) 1265
SchI GAGTC 1 cut(s) 871
ScrFI CCNGG 4 cut(s) 495, 534, 833, 1056
SduI GDGCHC 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 733
SfiI GGCCNNNNNGGCC 1 cut(s) 462
SinI GGWCC 2 cut(s) 694, 1205
SmiMI CAYNNNNRTG 2 cut(s) 641, 1306
SmlI CTYRAG 1 cut(s) 935
SmoI CTYRAG 1 cut(s) 935
SsiI CCGC 4 cut(s) 52, 63, 86, 537
SspI AATATT 1 cut(s) 960
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 4 cut(s) 493, 532, 831, 1054
TaaI ACNGT 2 cut(s) 393, 872
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 573
TatI WGTACW 2 cut(s) 1003, 1263
TfiI GAWTC 5 cut(s) 305, 431, 788, 949, 1199
Tru1I TTAA 6 cut(s) 153, 411, 687, 906, 936, 1115
Tru9I TTAA 6 cut(s) 153, 411, 687, 906, 936, 1115
TscAI CASTG 4 cut(s) 589, 664, 765, 1152
TseFI GTSAC 2 cut(s) 505, 1321
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 2 cut(s) 505, 1321
TspDTI ATGAA 8 cut(s) 167, 315, 363, 659, 773, 801, 878, 1326
TspRI CASTG 4 cut(s) 589, 664, 765, 1152
Vha464I CTTAAG 1 cut(s) 935
VpaK11BI GGWCC 2 cut(s) 694, 1205
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 3 cut(s) 319, 555, 851
XcmI CCANNNNNNNNNTGG 1 cut(s) 1045
XmnI GAANNNNTTC 2 cut(s) 252, 948
XspI CTAG 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.