Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Forward (+)

7988371 .. 7992522

Gene Structure 4152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGCGTGGGGGTAGGAAGAGAGGAGATTTTTGTGGACATAATTGAGAATCTGAGTGTCACATTCAGTTCTAGTGGGTATATACTTACTTCTGAAATTGATGGTACTATTCAATTGAAGAGTTATCTGACAGGCAATCCAGACATTCGACTCGCTCTTAATGAGGAAGTGAGTATAGGAAGAGATGGAGGGTCAACTTATGATTATGGTAGTTCGTTTGGATCAGGGCCTGTTATACTAGATGATTGTAACTTCCATGAATCTGTACGTCTTGACAATTTTGACATTGACAGAACACTGACACTGGGTTCAACAGATGGTGAATTTCCTGTCATGAATTACCGCATAACTCAGGAATTCAAGCCTCCCTTTCGTATAAATGCGTTAGTTGAAGAATCAGGGCGCCTTAAGGCTGAAGTGACTATCAAAGTGCATGCTGAATTCCCATCGAGCATCATTGCAGATAAAATTATGGTGCAGCTACCAGTGCCACCATATACAACCAAGGTTAGTTTTGAGTTGGAACCAGGAGCAGTTGGAAACACAAACGATTTCAAGGAAGCAAACAAGAGAATTGAATGGGGTTTAAAGAAGATCGTTGGTGGATCTGAACATACTTTACATGCAAAGCTGACATTTGCGCAGGAATTACGTGGAAATATTACCAAGGAAGCTGGACCTGTGAGCATGACATTCACAATACCCATGTACAATGCTTCAAGGCTTCAGGTAAAATACTTGCATATAACAAAGAAGTCGAAGAGCTATAATCCATATAGATGGGTGAGATACGTCACACAGTCAAATTCCTATGTTGCTCGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006605 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0030117 GO:0030119 GO:0030124 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072657 GO:0090160 GO:0097708 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

275

Amino Acids

30.74

Weight (kDa)

6.01

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	6 - 275	2.6e-73	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	826
Acc16I	TGCGCA	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	402
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	2 cut(s)	229, 613
AcsI	RAATTY	4 cut(s)	323, 356, 440, 805
AcuI	CTGAAG	2 cut(s)	435, 710
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	3 cut(s)	106, 267, 710
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	8 cut(s)	113, 118, 312, 361, 392, 556, 578, 720
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	4 cut(s)	481, 631, 674, 765
AluI	AGCT	4 cut(s)	481, 631, 674, 765
AlwI	GGATC	2 cut(s)	229, 613
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	4 cut(s)	323, 356, 440, 805
AspLEI	GCGC	2 cut(s)	405, 643
AspS9I	GGNCC	2 cut(s)	227, 677
AsuHPI	GGTGA	2 cut(s)	332, 796
AvaII	GGWCC	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	5 cut(s)	95, 179, 311, 454, 774
BciT130I	CCWGG	1 cut(s)	528
BfaI	CTAG	2 cut(s)	72, 239
BfoI	RGCGCY	1 cut(s)	406
BfrI	CTTAAG	1 cut(s)	407
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	2 cut(s)	227, 677
BmiI	GGNNCC	2 cut(s)	404, 525
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	504, 666
Bse1I	ACTGG	2 cut(s)	309, 485
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	504, 666
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	44, 365
BseNI	ACTGG	2 cut(s)	309, 485
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	221, 594, 605
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	2 cut(s)	45, 364
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	404, 525
BspPI	GGATC	2 cut(s)	229, 613
BspQI	GCTCTTC	1 cut(s)	755
BspT107I	GGYRCC	1 cut(s)	402
BspTI	CTTAAG	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	708
BsrI	ACTGG	2 cut(s)	309, 485
BssECI	CCNNGG	2 cut(s)	504, 666
BssMI	GATC	3 cut(s)	221, 594, 605
BssNI	GRCGYC	1 cut(s)	403
BssT1I	CCWWGG	2 cut(s)	504, 666
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	801
Bst6I	CTCTTC	4 cut(s)	13, 113, 175, 755
BstACI	GRCGYC	1 cut(s)	403
BstAFI	CTTAAG	1 cut(s)	407
BstAUI	TGTACA	1 cut(s)	708
BstBAI	YACGTR	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	53, 351
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	405, 643
BstKTI	GATC	3 cut(s)	224, 597, 608
BstMBI	GATC	3 cut(s)	221, 594, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	2 cut(s)	437, 626
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	605
BstXI	CCANNNNNNTGG	1 cut(s)	780
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	229
BtsIMutI	CAGTG	3 cut(s)	296, 302, 492
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	2 cut(s)	405, 643
Cfr13I	GGNCC	2 cut(s)	227, 677
Csp6I	GTAC	3 cut(s)	105, 266, 709
CviAII	CATG	6 cut(s)	257, 334, 434, 623, 688, 706
CviJI	RGCY	8 cut(s)	229, 364, 413, 481, 631, 674, 724, 765
CviKI_1	RGCY	8 cut(s)	229, 364, 413, 481, 631, 674, 724, 765
CviQI	GTAC	3 cut(s)	105, 266, 709
DdeI	CTNAG	2 cut(s)	53, 351
DinI	GGCGCC	1 cut(s)	404
DpnI	GATC	3 cut(s)	223, 596, 607
DpnII	GATC	3 cut(s)	221, 594, 605
DraI	TTTAAA	1 cut(s)	588
Eam1104I	CTCTTC	4 cut(s)	13, 113, 175, 755
EarI	CTCTTC	4 cut(s)	13, 113, 175, 755
Eco130I	CCWWGG	2 cut(s)	504, 666
Eco47I	GGWCC	1 cut(s)	677
Eco57I	CTGAAG	2 cut(s)	435, 710
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	2 cut(s)	356, 440
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	504, 666
EgeI	GGCGCC	1 cut(s)	404
EheI	GGCGCC	1 cut(s)	404
ErhI	CCWWGG	2 cut(s)	504, 666
FaeI	CATG	6 cut(s)	260, 337, 437, 626, 691, 709
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	6 cut(s)	256, 333, 433, 622, 687, 705
Fnu4HI	GCNGC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	2 cut(s)	72, 239
FspI	TGCGCA	1 cut(s)	642
GlaI	GCGC	2 cut(s)	404, 642
GluI	GCNGC	1 cut(s)	479
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	405, 643
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	6 cut(s)	260, 337, 437, 626, 691, 709
Hin6I	GCGC	2 cut(s)	403, 641
HinP1I	GCGC	2 cut(s)	403, 641
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	4 cut(s)	49, 150, 260, 395
HphI	GGTGA	2 cut(s)	332, 796
Hpy166II	GTNNAC	2 cut(s)	37, 195
Hpy188I	TCNGA	4 cut(s)	54, 94, 129, 610
Hpy188III	TCNNGA	4 cut(s)	140, 272, 334, 353
Hpy8I	GTNNAC	2 cut(s)	37, 195
HpyCH4III	ACNGT	1 cut(s)	801
HpyCH4IV	ACGT	3 cut(s)	268, 652, 792
HpyCH4V	TGCA	5 cut(s)	433, 461, 478, 626, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	2 cut(s)	53, 351
HpySE526I	ACGT	3 cut(s)	268, 652, 792
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	6 cut(s)	260, 337, 437, 626, 691, 709
HspAI	GCGC	2 cut(s)	403, 641
KasI	GGCGCC	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	221, 594, 605
LguI	GCTCTTC	1 cut(s)	755
LmnI	GCTCC	1 cut(s)	530
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	2 cut(s)	72, 239
MaeII	ACGT	3 cut(s)	268, 652, 792
MaeIII	GTNAC	4 cut(s)	58, 248, 418, 793
MalI	GATC	3 cut(s)	223, 596, 607
MboI	GATC	3 cut(s)	221, 594, 605
MboII	GAAGA	6 cut(s)	30, 130, 192, 404, 604, 772
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	1 cut(s)	605
Mly113I	GGCGCC	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	2 cut(s)	501, 517
MnlI	CCTC	4 cut(s)	16, 157, 182, 375
MseI	TTAA	3 cut(s)	159, 408, 587
MslI	CAYNNNNRTG	1 cut(s)	778
MspCI	CTTAAG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	528
MunI	CAATTG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	487
NarI	GGCGCC	1 cut(s)	403
NdeII	GATC	3 cut(s)	221, 594, 605
NlaIII	CATG	6 cut(s)	260, 337, 437, 626, 691, 709
NlaIV	GGNNCC	2 cut(s)	404, 525
NmuCI	GTSAC	3 cut(s)	58, 418, 793
NsbI	TGCGCA	1 cut(s)	642
NspI	RCATGY	2 cut(s)	437, 626
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	755
PfeI	GAWTC	3 cut(s)	49, 260, 395
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	1 cut(s)	144
PluTI	GGCGCC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	653
PsiI	TTATAA	1 cut(s)	826
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	404, 525
PspPI	GGNCC	2 cut(s)	227, 677
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	605
RsaI	GTAC	3 cut(s)	106, 267, 710
RsaNI	GTAC	3 cut(s)	105, 266, 709
RseI	CAYNNNNRTG	1 cut(s)	778
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	3 cut(s)	159, 408, 587
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	3 cut(s)	221, 594, 605
Sau96I	GGNCC	2 cut(s)	227, 677
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	1 cut(s)	462
SfoI	GGCGCC	1 cut(s)	404
SinI	GGWCC	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	778
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	437
SsiI	CCGC	1 cut(s)	343
SspDI	GGCGCC	1 cut(s)	402
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	2 cut(s)	72, 239
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	504, 666
TaaI	ACNGT	1 cut(s)	801
TaiI	ACGT	3 cut(s)	271, 655, 795
TaqI	TCGA	3 cut(s)	148, 449, 758
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	3 cut(s)	49, 260, 395
Tru1I	TTAA	3 cut(s)	159, 408, 587
Tru9I	TTAA	3 cut(s)	159, 408, 587
TscAI	CASTG	3 cut(s)	303, 309, 492
TseFI	GTSAC	3 cut(s)	58, 418, 793
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	3 cut(s)	58, 418, 793
TspDTI	ATGAA	2 cut(s)	273, 350
TspRI	CASTG	3 cut(s)	303, 309, 492
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	4 cut(s)	323, 356, 440, 805
XceI	RCATGY	2 cut(s)	437, 626
XspI	CTAG	2 cut(s)	72, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.