Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Reverse (-)

29671407 .. 29682403

Gene Structure 10997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0300200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3597 bp

ATGGAGATGAGCTGCCAGTCAAATGGCAATTCTAGTGATATTCAACAGCTTTGTAACTCTGGGGGGACCCCATACCAGGACAAGACTTACTTGGGCTATATGCCTCCTCCTCCTCCTTTTGTGAGCGGATGGATGTATGTTAATGAACAAGGACAAATGTGCGGCCCGTATATTCAGCAGCAGTTATTTGAAGGTTTATCTACTGGTTTTTTGCCAGATGAGCTTCCTGTATATCCTGTGGTAAATGGGGCATTAATAAACCCAATACCATTGAAGTATTTCAAGCAGTTCCCTGATCATGTTGCTACTGGGTTTGCATATCTGAGTCTGGGCAGCATCTCGAGCACAAGCACGCCTACAAATTCTCTTAAATCTTGCAATGGGGATTTGGCTACAATCGCTACATGTAGTATACCTACACCAGTTGCTACCGGTTATCCTGATTTACAGTATGACTCCACTTCACAGGCCAGCTACGACACTAGTGTTTCCAATAAGCTGATATTGAACTCCAAAGCACCTAATCAAGTTACTTCAAATCAGTCACTGTCAAGTAAAGATTCTTGCTGGTTGTATGAGGATGAGGAAGGGAAGAGAAATGGGCCATATTCTCTTTTCGAATTAAATTCTTGGCATCGATATGGATATCTTCGGGATTCGCTGACGATTTATCATTTCAAGAACAAGTGTAAACCCTTCACACTGTCATCGGTTCTCAATTCATGGAAACTTGATGGACCTGAAACCATCACCAAATTTGATGCCAAATGTAATGAGTCTGGTCCATTGGTAAGCATTATATCTGAAGTCACAGAGGGAGTTTCTTCCCAACTGCACTACGGAATTATGAAATCAGCTCGTAGAGTTGTTTTAGATGAGATAATCAGCAATGTGATTGCTGAGTTTGTTACCACCACGAAAGCTCAGAGACTTAACCAGGATATGAAGACCTGTTCCTTGGATGCAAAAAAGTCTGAAATTGACGGTGAGGCTGGAGTTTCCGGCTATGTTGCTGAAAGGACTTGTATCAATCAAGATTCGCCTTCACCAATGACTAAATCTGTTGGAAGCATTCAGAACTTTTGGGATTCTTATGCAGTTGTTTGTAGAATGCTCTTTGATTATTGCATGGAAGTCATGTGGAATGCTGTCTTCTATGATTCAGTGGCAGAATATTCATCTGCTTGGAGGAGAAGGAAACTATGGACTGGCTCTCCATTGTTGTGGAGACCTCCTAATAGATGTGGTGACTGGGTGGAAAAGATCACAAAATTACCTCATGAAATTTTATCTGATAATGATGATGATCGTCCCCCTGGTTTTGAACTGTTGGGAGCTGAGTTAGGGCGTCATGCTCAGCCATCATTGAGCTCTTCATTGGTTCTAATGGAGGAAAAACCACCTAAACAGATAGGTCCCTCATACGAAGACATGAAGTACATTGTAGAGCATATAGAAAATGAACTTCAATTGACTGCAAAGAGTTCCTTGACCGAGTATGTTGGATGCTTTGTTGATGAGGAAGTGAGTAAACTAGTTAATTTGTCCACAGAAGAGAATTCAATAAAGGAGAATATTGACTGTTCCCCGAGGAGCATAGGTGGCTCATCTGACCTATGTGACAATTTGAGGAATTCAAATAACACATCTGCAGAAATTATTCTGTCTGAGATATCCCTAACTCCAGAAGTAGAAAAACCCTTCCATAGTTCTTTTCCTGAAAATCGTATGTCTAATTTTCTGGCAAGTGCTTTTAAGGAAGTCTGTTCTCACGTTGATGATCTTGATGGTGACCAAGAAGTAAATGAACCATCACCCCCTGGACTCATAGCCAATGTTAAAACTCTTGGACAGTCACCTATTTGCAAATTCCGACCTTCAAGGTCAGAAGAATGTATTCCTAAGATTGGAGCATATGTTGCTACAGCAATGTTGCGGAAGAAACTCCATGATGATGTTATTGGAGAATGGAAATCATCATTTATTGATCTGGCTCTTAATAAGTTTCTTGCATCATGGCGAACTTCAAGGAAGAACCATATCCGTAATGAGGAAAAAGCATGCAACACCAATAAAGAAGAATTAAAGCATTGTCACAGTTCTATCACTGCAGAAGTATCTCCAGTGATCGATGAATATACATATCAGCGCAAGAGGTTGCGGAAAAAGTCGGGTTCTTCTGGACTTGTAACTGTAATTGATACTGGGTTAAAGAGTGAAACAGTGGAAAAGGCAAAGAAGCTACATGTTGCTAGAAATGTGCCGAAGAATGCTACTGTGATTCCTAGAAAAAGAAGTCTAAGCAAACTCCAAACTGAATCATCTGTTGATGCCATATCTGTGAAAGTTAATTCTAAAAGGCTTTCATCAACTGATAAGTCAGCAGCTAAGAATGCTAGTTGTCGGAAGCCATTGAAGGGTTCTCATGAACAAAGTTGTGAGCCCATTGACAATGTTATTGATGGCATCAGCTCAGTTAGGGGATCCCAAACTGAATTATCTGTTGGTGCCATTGCCTTGCAAGCCATTGATAAGAGGTGTTCATCCACTGATACATTAGTAGCTAATAATGCTATTAGTCGGAAACGATTGAAGGTTTCTCATGCAGTTAAAGGTAGTGAACCCGTGGAGTGCACTCCTAAACCTAGTAAAAGGATGGTTTCAGCTCATGTCCAGGATCACAATGATATTGAGAATGTTGTAAATAGCCATGGTCGTGATGATCAACTTAAAGGAGAGCCTTTAACTAAGGTGTTGAAGCTGAAAAGGGAGCGTCCAGTTGGCGGTTCACAATTGCCACATCCCAAAAAGGTCTTGAAAGTAGCCAATGATGTTCTCAAGCAAGCAGCAAATATCCCAGTCGCAGTAAGAAAGGCCCGGTCCAGTAAGTCAAAGACATCAAATCCTTGCCCTAAATCTGATGGATGTGCCCGTGCTTCAATTAATGGCTGGGAATGGCATAGATGGTCACTAAATGCAACTCCTGCTGAAAGAGCTCGTGTTAGGGGAATCAAATACGTTAATGCCCAGTACCGGACTTCGGACACTAATACATCACAGTGGTCAAATGGCAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAGATGCGCAGTCTTCTTGCTGCTGCTGAGGGTGCTGACCTTTTGAAAGCCACTCAATTAAAGGCAAGGAAAAAGCGTCTACGTTTCCAGCGGAGCAAGATACATGATTGGGGTCTTATTGCCTTGGAGCCAATCGAGGCAGAAGACTTTGTTATTGAATATGTTGGAGAATTGATTCGTCCCCAGATATCTGATATACGCGAGCGTCATTACGAGAAGATGGGAATTGGCAGCAGTTATTTGTTTAGGATTGATGATGGTTATGTGGTTGATGCTACAAAACGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGCCTAACTGCTACACCAAGGTTATAAGTGTTGAGGGTGAGAAAAAGATTTTCATTTATGCAAAACGACATATAGCTGCTGGTGAAGAAATTACTTACAATTATAAGTTCCCATTAGAGGAGAAAAAGATTCCATGCAATTGTGGTTCGAAAAGGTGCCGTGGATCATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

1198

Amino Acids

133.3

Weight (kDa)

8.7

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	1071 - 1176	1.2e-27	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3446, 3525
Acc16I	TGCGCA	1 cut(s)	3110
AccB1I	GGYRCC	2 cut(s)	2507, 3576
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	2 cut(s)	412, 3181
AccII	CGCG	1 cut(s)	3303
AciI	CCGC	6 cut(s)	126, 162, 1936, 2161, 2784, 3193
AclWI	GGATC	4 cut(s)	2478, 2491, 2685, 3592
AcsI	RAATTY	7 cut(s)	361, 625, 755, 1284, 1558, 1633, 1868
AcuI	CTGAAG	1 cut(s)	825
AcyI	GRCGYC	1 cut(s)	1348
AfaI	GTAC	2 cut(s)	1439, 3032
AfiI	CCNNNNNNNGG	8 cut(s)	76, 1907, 2050, 2417, 2783, 3033, 3040, 3538
AflIII	ACRYGT	2 cut(s)	404, 2245
AgeI	ACCGGT	1 cut(s)	431
AhlI	ACTAGT	2 cut(s)	482, 1534
AjnI	CCWGG	5 cut(s)	75, 936, 1315, 1819, 2673
AjuI	GAANNNNNNNTTGG	2 cut(s)	2487, 2519
Alw21I	GWGCWC	4 cut(s)	347, 1373, 2636, 2998
Alw26I	GTCTC	2 cut(s)	922, 1222
Alw44I	GTGCAC	1 cut(s)	2632
AlwI	GGATC	4 cut(s)	2478, 2491, 2685, 3592
AlwNI	CAGNNNCTG	1 cut(s)	547
Ama87I	CYCGRG	2 cut(s)	340, 1588
AoxI	GGCC	4 cut(s)	163, 468, 602, 2874
ApaLI	GTGCAC	1 cut(s)	2632
ApeKI	GCWGC	9 cut(s)	12, 178, 333, 2384, 2846, 3122, 3125, 3333, 3497
ApoI	RAATTY	7 cut(s)	361, 625, 755, 1284, 1558, 1633, 1868
AseI	ATTAAT	2 cut(s)	254, 2943
AsiGI	ACCGGT	1 cut(s)	431
Asp700I	GAANNNNTTC	4 cut(s)	278, 1659, 1896, 3276
AspLEI	GCGC	2 cut(s)	2151, 3111
AspS9I	GGNCC	8 cut(s)	66, 164, 602, 737, 782, 1415, 2875, 2880
AsuC2I	CCSGG	1 cut(s)	2878
AsuII	TTCGAA	2 cut(s)	618, 3569
AvaI	CYCGRG	2 cut(s)	340, 1588
AvaII	GGWCC	5 cut(s)	66, 737, 782, 1415, 2880
BaeGI	GKGCMC	2 cut(s)	2636, 2932
BaeI	ACNNNNGTAYC	2 cut(s)	2544, 2577
BamHI	GGATCC	1 cut(s)	2483
BanI	GGYRCC	2 cut(s)	2507, 3576
BanII	GRGCYC	3 cut(s)	1373, 2445, 2998
BauI	CACGAG	1 cut(s)	2997
BbsI	GAAGAC	5 cut(s)	953, 1144, 1434, 3107, 3252
Bbv12I	GWGCWC	4 cut(s)	347, 1373, 2636, 2998
BbvCI	CCTCAGC	1 cut(s)	3129
BbvI	GCAGC	8 cut(s)	190, 345, 2396, 2858, 3109, 3112, 3345, 3484
BceAI	ACGGC	1 cut(s)	3564
BciT130I	CCWGG	5 cut(s)	77, 938, 1317, 1821, 2675
BclI	TGATCA	2 cut(s)	295, 2722
BcnI	CCSGG	1 cut(s)	2878
BcoDI	GTCTC	2 cut(s)	922, 1222
BcuI	ACTAGT	2 cut(s)	482, 1534
BfaI	CTAG	8 cut(s)	33, 483, 1535, 2253, 2286, 2397, 2646, 3399
BfmI	CTRYAG	3 cut(s)	1650, 1923, 2109
BlpI	GCTNAGC	1 cut(s)	1356
Bme1390I	CCNGG	6 cut(s)	77, 938, 1317, 1821, 2675, 2878
Bme18I	GGWCC	5 cut(s)	66, 737, 782, 1415, 2880
BmeT110I	CYCGRG	2 cut(s)	340, 1588
BmgT120I	GGNCC	8 cut(s)	66, 164, 602, 737, 782, 1415, 2875, 2880
BmiI	GGNNCC	7 cut(s)	67, 68, 1417, 2485, 2509, 3231, 3578
BmrFI	CCNGG	6 cut(s)	77, 938, 1317, 1821, 2675, 2878
BmrI	ACTGGG	5 cut(s)	318, 1261, 2214, 2852, 3022
BmuI	ACTGGG	5 cut(s)	318, 1261, 2214, 2852, 3022
BpiI	GAAGAC	5 cut(s)	953, 1144, 1434, 3107, 3252
BpmI	CTGGAG	3 cut(s)	1014, 1668, 2106
Bpu10I	CCTNAGC	1 cut(s)	3129
Bpu1102I	GCTNAGC	1 cut(s)	1356
Bpu14I	TTCGAA	2 cut(s)	618, 3569
BpuEI	CTTGAG	1 cut(s)	2822
BpuMI	CCSGG	1 cut(s)	2878
Bsa29I	ATCGAT	2 cut(s)	637, 2130
BsaBI	GATNNNNATC	1 cut(s)	1305
BsaHI	GRCGYC	1 cut(s)	1348
BsaI	GGTCTC	1 cut(s)	1222
BsaJI	CCNNGG	9 cut(s)	957, 1315, 1589, 1819, 2625, 2710, 3225, 3438, 3580
BsaWI	WCCGGW	2 cut(s)	431, 3033
BsaXI	ACNNNNNCTCC	6 cut(s)	1198, 1228, 1585, 1615, 1902, 1932
Bsc4I	CCNNNNNNNGG	8 cut(s)	76, 1907, 2050, 2417, 2783, 3033, 3040, 3538
Bse118I	RCCGGY	1 cut(s)	431
Bse3DI	GCAATG	4 cut(s)	385, 895, 1935, 2511
Bse8I	GATNNNNATC	1 cut(s)	1305
BseBI	CCWGG	5 cut(s)	77, 938, 1317, 1821, 2675
BseCI	ATCGAT	2 cut(s)	637, 2130
BseDI	CCNNGG	9 cut(s)	957, 1315, 1589, 1819, 2625, 2710, 3225, 3438, 3580
BseGI	GGATG	9 cut(s)	134, 138, 586, 967, 1511, 2543, 2661, 2800, 2930
BseJI	GATNNNNATC	1 cut(s)	1305
BseLI	CCNNNNNNNGG	8 cut(s)	76, 1907, 2050, 2417, 2783, 3033, 3040, 3538
BseMI	GCAATG	4 cut(s)	385, 895, 1935, 2511
BseMII	CTCAG	8 cut(s)	314, 891, 938, 1329, 1370, 1659, 2487, 3120
BseRI	GAGGAG	6 cut(s)	96, 99, 102, 1204, 1606, 3554
BseSI	GKGCMC	2 cut(s)	2636, 2932
BseXI	GCAGC	8 cut(s)	190, 345, 2396, 2858, 3109, 3112, 3345, 3484
BseYI	CCCAGC	1 cut(s)	2949
BsgI	GTGCAG	1 cut(s)	818
Bsh1236I	CGCG	1 cut(s)	3303
BshFI	GGCC	4 cut(s)	165, 470, 604, 2876
BshNI	GGYRCC	2 cut(s)	2507, 3576
BshTI	ACCGGT	1 cut(s)	431
BshVI	ATCGAT	2 cut(s)	637, 2130
BsiHKAI	GWGCWC	4 cut(s)	347, 1373, 2636, 2998
BsiHKCI	CYCGRG	2 cut(s)	340, 1588
BsiSI	CCGG	4 cut(s)	432, 1002, 2878, 3034
BslFI	GGGAC	4 cut(s)	79, 1296, 1401, 3267
BslI	CCNNNNNNNGG	8 cut(s)	76, 1907, 2050, 2417, 2783, 3033, 3040, 3538
BsmAI	GTCTC	2 cut(s)	922, 1222
BsmFI	GGGAC	4 cut(s)	79, 1296, 1401, 3267
BsmI	GAATGC	5 cut(s)	1071, 1116, 1150, 2275, 2398
BsnI	GGCC	4 cut(s)	165, 470, 604, 2876
Bso31I	GGTCTC	1 cut(s)	1222
BsoBI	CYCGRG	2 cut(s)	340, 1588
Bsp119I	TTCGAA	2 cut(s)	618, 3569
Bsp1286I	GDGCHC	6 cut(s)	347, 1373, 2445, 2636, 2932, 2998
Bsp1720I	GCTNAGC	1 cut(s)	1356
Bsp19I	CCATGG	1 cut(s)	2710
BspACI	CCGC	6 cut(s)	126, 162, 1936, 2161, 2784, 3193
BspANI	GGCC	4 cut(s)	165, 470, 604, 2876
BspCNI	CTCAG	8 cut(s)	315, 892, 937, 1330, 1369, 1660, 2486, 3121
BspDI	ATCGAT	2 cut(s)	637, 2130
BspFNI	CGCG	1 cut(s)	3303
BspHI	TCATGA	2 cut(s)	1279, 2425
BspLI	GGNNCC	7 cut(s)	67, 68, 1417, 2485, 2509, 3231, 3578
BspMAI	CTGCAG	2 cut(s)	1654, 2113
BspPI	GGATC	4 cut(s)	2478, 2491, 2685, 3592
BspQI	GCTCTTC	1 cut(s)	1378
BspT104I	TTCGAA	2 cut(s)	618, 3569
BspT107I	GGYRCC	2 cut(s)	2507, 3576
BspTNI	GGTCTC	1 cut(s)	1222
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	4 cut(s)	385, 895, 1935, 2511
BsrFI	RCCGGY	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	9 cut(s)	957, 1315, 1589, 1819, 2625, 2710, 3225, 3438, 3580
BssNAI	GTATAC	1 cut(s)	413
BssNI	GRCGYC	1 cut(s)	1348
BssSI	CACGAG	1 cut(s)	2997
BssT1I	CCWWGG	4 cut(s)	957, 2710, 3225, 3438
Bst1107I	GTATAC	1 cut(s)	413
Bst2BI	CACGAG	1 cut(s)	2997
Bst2UI	CCWGG	5 cut(s)	77, 938, 1317, 1821, 2675
Bst6I	CTCTTC	3 cut(s)	587, 1378, 1548
BstACI	GRCGYC	1 cut(s)	1348
BstAPI	GCANNNNNTGC	2 cut(s)	1919, 2984
BstBI	TTCGAA	2 cut(s)	618, 3569
BstC8I	GCNNGC	6 cut(s)	353, 472, 2062, 2523, 2844, 3305
BstDSI	CCRYGG	3 cut(s)	2625, 2710, 3580
BstEII	GGTNACC	1 cut(s)	1790
BstF5I	GGATG	9 cut(s)	134, 138, 586, 967, 1511, 2543, 2661, 2800, 2930
BstFNI	CGCG	1 cut(s)	3303
BstHHI	GCGC	2 cut(s)	2151, 3111
BstMAI	GTCTC	2 cut(s)	922, 1222
BstNI	CCWGG	5 cut(s)	77, 938, 1317, 1821, 2675
BstNSI	RCATGY	3 cut(s)	408, 2064, 2249
BstPI	GGTNACC	1 cut(s)	1790
BstSCI	CCNGG	6 cut(s)	75, 936, 1315, 1819, 2673, 2876
BstSFI	CTRYAG	3 cut(s)	1650, 1923, 2109
BstSLI	GKGCMC	2 cut(s)	2636, 2932
BstUI	CGCG	1 cut(s)	3303
BstV1I	GCAGC	8 cut(s)	190, 345, 2396, 2858, 3109, 3112, 3345, 3484
BstV2I	GAAGAC	5 cut(s)	953, 1144, 1434, 3107, 3252
BstX2I	RGATCY	1 cut(s)	2483
BstXI	CCANNNNNNTGG	2 cut(s)	23, 1224
BstYI	RGATCY	1 cut(s)	2483
BstZ17I	GTATAC	1 cut(s)	413
Bsu15I	ATCGAT	2 cut(s)	637, 2130
BsuRI	GGCC	4 cut(s)	165, 470, 604, 2876
BsuTUI	ATCGAT	2 cut(s)	637, 2130
BtgI	CCRYGG	3 cut(s)	2625, 2710, 3580
BtsCI	GGATG	9 cut(s)	134, 138, 586, 967, 1511, 2543, 2661, 2800, 2930
BtsI	GCAGTG	1 cut(s)	2106
BtsIMutI	CAGTG	8 cut(s)	545, 701, 1170, 2106, 2130, 2229, 2547, 3065
Cac8I	GCNNGC	6 cut(s)	353, 472, 2062, 2523, 2844, 3305
CaiI	CAGNNNCTG	1 cut(s)	547
CciI	TCATGA	2 cut(s)	1279, 2425
CfoI	GCGC	2 cut(s)	2151, 3111
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	8 cut(s)	66, 164, 602, 737, 782, 1415, 2875, 2880
ClaI	ATCGAT	2 cut(s)	637, 2130
CseI	GACGC	4 cut(s)	1337, 2762, 3167, 3296
Csp6I	GTAC	2 cut(s)	1438, 3031
CspAI	ACCGGT	1 cut(s)	431
CviQI	GTAC	2 cut(s)	1438, 3031
Eam1104I	CTCTTC	3 cut(s)	587, 1378, 1548
EarI	CTCTTC	3 cut(s)	587, 1378, 1548
Ecl136II	GAGCTC	2 cut(s)	1371, 2996
Eco130I	CCWWGG	4 cut(s)	957, 2710, 3225, 3438
Eco24I	GRGCYC	3 cut(s)	1373, 2445, 2998
Eco31I	GGTCTC	1 cut(s)	1222
Eco32I	GATATC	3 cut(s)	647, 1674, 3291
Eco47I	GGWCC	5 cut(s)	66, 737, 782, 1415, 2880
Eco53kI	GAGCTC	2 cut(s)	1371, 2996
Eco57I	CTGAAG	1 cut(s)	825
Eco88I	CYCGRG	2 cut(s)	340, 1588
Eco91I	GGTNACC	1 cut(s)	1790
EcoICRI	GAGCTC	2 cut(s)	1371, 2996
EcoO109I	RGGNCCY	2 cut(s)	66, 1415
EcoO65I	GGTNACC	1 cut(s)	1790
EcoRI	GAATTC	2 cut(s)	1558, 1633
EcoRII	CCWGG	5 cut(s)	75, 936, 1315, 1819, 2673
EcoRV	GATATC	3 cut(s)	647, 1674, 3291
EcoT14I	CCWWGG	4 cut(s)	957, 2710, 3225, 3438
EcoT38I	GRGCYC	3 cut(s)	1373, 2445, 2998
ErhI	CCWWGG	4 cut(s)	957, 2710, 3225, 3438
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 1472, 1504
FaqI	GGGAC	4 cut(s)	79, 1296, 1401, 3267
FauNDI	CATATG	1 cut(s)	1915
FbaI	TGATCA	2 cut(s)	295, 2722
FblI	GTMKAC	2 cut(s)	412, 3181
FokI	GGATG	9 cut(s)	141, 145, 593, 974, 1518, 2530, 2668, 2787, 2937
FriOI	GRGCYC	3 cut(s)	1373, 2445, 2998
FspBI	CTAG	8 cut(s)	33, 483, 1535, 2253, 2286, 2397, 2646, 3399
FspI	TGCGCA	1 cut(s)	3110
GlaI	GCGC	2 cut(s)	2150, 3110
GsaI	CCCAGC	1 cut(s)	2953
GsuI	CTGGAG	3 cut(s)	1014, 1668, 2106
HaeIII	GGCC	4 cut(s)	165, 470, 604, 2876
HapII	CCGG	4 cut(s)	432, 1002, 2878, 3034
HgaI	GACGC	4 cut(s)	1337, 2762, 3167, 3296
HhaI	GCGC	2 cut(s)	2151, 3111
Hin1I	GRCGYC	1 cut(s)	1348
Hin6I	GCGC	2 cut(s)	2149, 3109
HinP1I	GCGC	2 cut(s)	2149, 3109
HpaII	CCGG	4 cut(s)	432, 1002, 2878, 3034
Hpy166II	GTNNAC	8 cut(s)	413, 692, 1532, 1548, 2621, 2634, 2789, 3182
Hpy8I	GTNNAC	8 cut(s)	413, 692, 1532, 1548, 2621, 2634, 2789, 3182
HpyAV	CCTTC	9 cut(s)	185, 581, 706, 1053, 1188, 1711, 1887, 2410, 2587
HpyCH4IV	ACGT	4 cut(s)	1773, 3018, 3184, 3385
HpySE526I	ACGT	4 cut(s)	1773, 3018, 3184, 3385
Hsp92I	GRCGYC	1 cut(s)	1348
HspAI	GCGC	2 cut(s)	2149, 3109
KflI	GGGWCCC	1 cut(s)	66
Ksp22I	TGATCA	2 cut(s)	295, 2722
LguI	GCTCTTC	1 cut(s)	1378
LmnI	GCTCC	6 cut(s)	1334, 1593, 1910, 2770, 3195, 3229
Lsp1109I	GCAGC	8 cut(s)	190, 345, 2396, 2858, 3109, 3112, 3345, 3484
MaeI	CTAG	8 cut(s)	33, 483, 1535, 2253, 2286, 2397, 2646, 3399
MaeII	ACGT	4 cut(s)	1773, 3018, 3184, 3385
MbiI	CCGCTC	1 cut(s)	126
MfeI	CAATTG	3 cut(s)	1469, 2792, 3559
MflI	RGATCY	1 cut(s)	2483
MhlI	GDGCHC	6 cut(s)	347, 1373, 2445, 2636, 2932, 2998
MlyI	GAGTC	4 cut(s)	334, 449, 785, 1818
MmeI	TCCRAC	6 cut(s)	1045, 1483, 1897, 2384, 2561, 3247
MroXI	GAANNNNTTC	4 cut(s)	278, 1659, 1896, 3276
MslI	CAYNNNNRTG	8 cut(s)	639, 1222, 1776, 1953, 2339, 2715, 3058, 3417
MspA1I	CMGCKG	1 cut(s)	3193
MspI	CCGG	4 cut(s)	432, 1002, 2878, 3034
MspR9I	CCNGG	6 cut(s)	77, 938, 1317, 1821, 2675, 2878
MunI	CAATTG	3 cut(s)	1469, 2792, 3559
Mva1269I	GAATGC	5 cut(s)	1071, 1116, 1150, 2275, 2398
MvaI	CCWGG	5 cut(s)	77, 938, 1317, 1821, 2675
MvnI	CGCG	1 cut(s)	3303
NciI	CCSGG	1 cut(s)	2878
NcoI	CCATGG	1 cut(s)	2710
NdeI	CATATG	1 cut(s)	1915
NlaIV	GGNNCC	7 cut(s)	67, 68, 1417, 2485, 2509, 3231, 3578
NmuCI	GTSAC	8 cut(s)	543, 808, 1247, 1619, 1790, 1854, 2093, 2967
NsbI	TGCGCA	1 cut(s)	3110
NspI	RCATGY	3 cut(s)	408, 2064, 2249
NspV	TTCGAA	2 cut(s)	618, 3569
PaeI	GCATGC	1 cut(s)	2064
PaeR7I	CTCGAG	1 cut(s)	340
PagI	TCATGA	2 cut(s)	1279, 2425
PciI	ACATGT	2 cut(s)	404, 2245
PciSI	GCTCTTC	1 cut(s)	1378
PctI	GAATGC	5 cut(s)	1071, 1116, 1150, 2275, 2398
PdmI	GAANNNNTTC	4 cut(s)	278, 1659, 1896, 3276
PfoI	TCCNGGA	1 cut(s)	2673
PinAI	ACCGGT	1 cut(s)	431
PleI	GAGTC	4 cut(s)	333, 449, 784, 1818
PpsI	GAGTC	4 cut(s)	333, 449, 784, 1818
PpuMI	RGGWCCY	2 cut(s)	66, 1415
PscI	ACATGT	2 cut(s)	404, 2245
PshBI	ATTAAT	2 cut(s)	254, 2943
PsiI	TTATAA	2 cut(s)	3446, 3525
Psp124BI	GAGCTC	2 cut(s)	1373, 2998
Psp5II	RGGWCCY	2 cut(s)	66, 1415
Psp6I	CCWGG	5 cut(s)	75, 936, 1315, 1819, 2673
PspEI	GGTNACC	1 cut(s)	1790
PspFI	CCCAGC	1 cut(s)	2949
PspGI	CCWGG	5 cut(s)	75, 936, 1315, 1819, 2673
PspN4I	GGNNCC	7 cut(s)	67, 68, 1417, 2485, 2509, 3231, 3578
PspPI	GGNCC	8 cut(s)	66, 164, 602, 737, 782, 1415, 2875, 2880
PspPPI	RGGWCCY	2 cut(s)	66, 1415
PstI	CTGCAG	2 cut(s)	1654, 2113
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	2483
RsaI	GTAC	2 cut(s)	1439, 3032
RsaNI	GTAC	2 cut(s)	1438, 3031
RseI	CAYNNNNRTG	8 cut(s)	639, 1222, 1776, 1953, 2339, 2715, 3058, 3417
SacI	GAGCTC	2 cut(s)	1373, 2998
SapI	GCTCTTC	1 cut(s)	1378
Sau96I	GGNCC	8 cut(s)	66, 164, 602, 737, 782, 1415, 2875, 2880
SchI	GAGTC	4 cut(s)	334, 449, 785, 1818
ScrFI	CCNGG	6 cut(s)	77, 938, 1317, 1821, 2675, 2878
SduI	GDGCHC	6 cut(s)	347, 1373, 2445, 2636, 2932, 2998
SfcI	CTRYAG	3 cut(s)	1650, 1923, 2109
Sfr274I	CTCGAG	1 cut(s)	340
SfuI	TTCGAA	2 cut(s)	618, 3569
SinI	GGWCC	5 cut(s)	66, 737, 782, 1415, 2880
SlaI	CTCGAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	8 cut(s)	639, 1222, 1776, 1953, 2339, 2715, 3058, 3417
SmlI	CTYRAG	2 cut(s)	340, 2837
SmoI	CTYRAG	2 cut(s)	340, 2837
SpeI	ACTAGT	2 cut(s)	482, 1534
SphI	GCATGC	1 cut(s)	2064
SsiI	CCGC	6 cut(s)	126, 162, 1936, 2161, 2784, 3193
SspI	AATATT	2 cut(s)	1175, 1576
SspMI	CTAG	8 cut(s)	33, 483, 1535, 2253, 2286, 2397, 2646, 3399
SstI	GAGCTC	2 cut(s)	1373, 2998
StyD4I	CCNGG	6 cut(s)	75, 936, 1315, 1819, 2673, 2876
StyI	CCWWGG	4 cut(s)	957, 2710, 3225, 3438
TaiI	ACGT	4 cut(s)	1776, 3021, 3187, 3388
TaqI	TCGA	6 cut(s)	341, 618, 637, 2130, 3237, 3569
TaqII	GACCGA	1 cut(s)	1508
TatI	WGTACW	1 cut(s)	1437
TauI	GCSGC	1 cut(s)	165
TscAI	CASTG	8 cut(s)	552, 708, 1170, 2113, 2130, 2229, 2554, 3065
TseFI	GTSAC	8 cut(s)	543, 808, 1247, 1619, 1790, 1854, 2093, 2967
TseI	GCWGC	9 cut(s)	12, 178, 333, 2384, 2846, 3122, 3125, 3333, 3497
Tsp45I	GTSAC	8 cut(s)	543, 808, 1247, 1619, 1790, 1854, 2093, 2967
TspGWI	ACGGA	2 cut(s)	855, 2033
TspRI	CASTG	8 cut(s)	552, 708, 1170, 2113, 2130, 2229, 2554, 3065
VneI	GTGCAC	1 cut(s)	2632
VpaK11BI	GGWCC	5 cut(s)	66, 737, 782, 1415, 2880
VspI	ATTAAT	2 cut(s)	254, 2943
XapI	RAATTY	7 cut(s)	361, 625, 755, 1284, 1558, 1633, 1868
XceI	RCATGY	3 cut(s)	408, 2064, 2249
XhoI	CTCGAG	1 cut(s)	340
XmiI	GTMKAC	2 cut(s)	412, 3181
XmnI	GAANNNNTTC	4 cut(s)	278, 1659, 1896, 3276
XspI	CTAG	8 cut(s)	33, 483, 1535, 2253, 2286, 2397, 2646, 3399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.