Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Forward (+)

62911068 .. 62918377

Gene Structure 7310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG443200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGGGTGAGAAAGAAGGAACGAAAACCCGAATTTCGGACAGAAGAAGAGTGAGAGCCATGATCTCGCAGTTCTTCGTGCTCTCCCAGCGTGGCGACAATATCGTCTTCCGCGACTATCGCGGCGAAGTGCCGAAAGGCAGTGCAGAGATATTTTTCAGGAAAGTGAAGTTCTGGAAAGAAGATGGGCAAGAGGAAGCACCACCTGTCTTTAACGTAGATGGTGTCAACTACTTTCATGTGAAGGTCGTTGGACTCTTGTTTGTTGCAACTACGAGAGCTAATGTATCGCCGTCAATTGTCTTGGAACTTCTACAAAGAATTGCCCGTGTCATCAAAGATTATGTTGGAGTTCTCAATGAGGATTCTATCAGGAAGAATTTTGTGCTTGTCTATGAGTTGCTTGATGAAGTCATAGATTTCGGCTTTGTGCAAACAACATCAACTGAACTGTTGAAGTCTTATATATTTAATGAGCCAATTGTTATTGATGCTGCACGTTTATCATCTCTTGGATCTACAGGCCTTTTTATGCAAGGGACAAAGAGAATGCCTGGAACAGCTGTCACAAAATCTGTTGTTGCTAATGAGCCTGGGGGTAGGAAGAGGGAGGAAATTTTTGTGGACATAATTGAGAAGATCAGTGTTACTTTCAGCTCTAGCGGGTACATTTTGACTTCTGAGATTGATGGTACCATTCAAATGAAGAGCTATCTCACTGGTAATCCAGAAATCCGATTAGCTCTTAATGAGGACCTCGGCATTGGAAGAGGTGGAACATCGGCGTATGACTATAGGAGTTCATTTGGGTCGGGGGCAGTGATACTTGATGACTGCAATTTTCATGAATCTGTGCGTCTTGATAATTTTGATGTAGACAAAACTCTTACTCTGGTACCCCCAGATGGGGAGTTTCCTGTCATGAACTACCGTATGACTCAGGAGTTCAAGCCTCCTTTTCGTATTAATGCTCTGATTGAAGAAGCAGGATCGCTTAAGGTGAATACTGTTTTTTACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019904 GO:0030117 GO:0030119 GO:0030124 GO:0031090 GO:0031410 GO:0031904 GO:0031974 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072657 GO:0072665 GO:0072666 GO:0090160 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

340

Amino Acids

38.22

Weight (kDa)

5.41

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	202 - 335	5.7e-41	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc65I	GGTACC	2 cut(s)	692, 895
AccB1I	GGYRCC	2 cut(s)	692, 895
AccI	GTMKAC	1 cut(s)	876
AccII	CGCG	2 cut(s)	114, 123
AciI	CCGC	3 cut(s)	112, 123, 663
AclWI	GGATC	2 cut(s)	523, 997
AcsI	RAATTY	3 cut(s)	33, 379, 615
AfaI	GTAC	3 cut(s)	668, 694, 897
AfiI	CCNNNNNNNGG	4 cut(s)	37, 905, 906, 907
AflII	CTTAAG	1 cut(s)	995
AgsI	TTSAA	4 cut(s)	457, 701, 949, 980
AjnI	CCWGG	2 cut(s)	553, 592
AluBI	AGCT	5 cut(s)	281, 563, 657, 711, 743
AluI	AGCT	5 cut(s)	281, 563, 657, 711, 743
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	523, 997
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	3 cut(s)	33, 379, 615
AseI	ATTAAT	1 cut(s)	966
Asp718I	GGTACC	2 cut(s)	692, 895
AspS9I	GGNCC	1 cut(s)	754
AsuHPI	GGTGA	2 cut(s)	20, 1012
AvaII	GGWCC	1 cut(s)	754
BaeI	ACNNNNGTAYC	2 cut(s)	879, 912
BanI	GGYRCC	2 cut(s)	692, 895
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	4 cut(s)	179, 215, 683, 899
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	555, 594
BfaI	CTAG	1 cut(s)	660
BfmI	CTRYAG	2 cut(s)	519, 793
BfrI	CTTAAG	1 cut(s)	995
BisI	GCNGC	2 cut(s)	124, 495
BlsI	GCNGC	2 cut(s)	125, 496
Bme1390I	CCNGG	2 cut(s)	555, 594
Bme18I	GGWCC	1 cut(s)	754
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	2 cut(s)	694, 897
BmrFI	CCNGG	2 cut(s)	555, 594
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	593, 757
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 905, 906, 907
Bse1I	ACTGG	1 cut(s)	724
BseBI	CCWGG	2 cut(s)	555, 594
BseDI	CCNNGG	2 cut(s)	593, 757
BseLI	CCNNNNNNNGG	4 cut(s)	37, 905, 906, 907
BseMII	CTCAG	2 cut(s)	672, 953
BseNI	ACTGG	1 cut(s)	724
BseXI	GCAGC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	87
BsgI	GTGCAG	2 cut(s)	165, 480
Bsh1236I	CGCG	2 cut(s)	114, 123
BshFI	GGCC	1 cut(s)	525
BshNI	GGYRCC	2 cut(s)	692, 895
BsiHKAI	GWGCWC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	4 cut(s)	37, 905, 906, 907
BsmFI	GGGAC	1 cut(s)	553
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	63, 515, 639, 989
BspACI	CCGC	3 cut(s)	112, 123, 663
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	2 cut(s)	673, 952
BspFNI	CGCG	2 cut(s)	114, 123
BspHI	TCATGA	2 cut(s)	844, 921
BspLI	GGNNCC	2 cut(s)	694, 897
BspPI	GGATC	2 cut(s)	523, 997
BspQI	GCTCTTC	1 cut(s)	701
BspT107I	GGYRCC	2 cut(s)	692, 895
BspTI	CTTAAG	1 cut(s)	995
BsrI	ACTGG	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	593, 757
BssMI	GATC	4 cut(s)	63, 515, 639, 989
Bst2UI	CCWGG	2 cut(s)	555, 594
Bst4CI	ACNGT	3 cut(s)	453, 932, 1009
Bst6I	CTCTTC	4 cut(s)	43, 599, 701, 763
BstAFI	CTTAAG	1 cut(s)	995
BstDEI	CTNAG	2 cut(s)	681, 939
BstFNI	CGCG	2 cut(s)	114, 123
BstKTI	GATC	4 cut(s)	66, 518, 642, 992
BstMBI	GATC	4 cut(s)	63, 515, 639, 989
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 120
BstNI	CCWGG	2 cut(s)	555, 594
BstSCI	CCNGG	2 cut(s)	553, 592
BstSFI	CTRYAG	2 cut(s)	519, 793
BstUI	CGCG	2 cut(s)	114, 123
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	525
BtsI	GCAGTG	2 cut(s)	148, 825
BtsIMutI	CAGTG	4 cut(s)	148, 649, 717, 825
CciI	TCATGA	2 cut(s)	844, 921
Cfr13I	GGNCC	1 cut(s)	754
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	3 cut(s)	667, 693, 896
CviAII	CATG	4 cut(s)	61, 239, 845, 922
CviQI	GTAC	3 cut(s)	667, 693, 896
DdeI	CTNAG	2 cut(s)	681, 939
DpnI	GATC	4 cut(s)	65, 517, 641, 991
DpnII	GATC	4 cut(s)	63, 515, 639, 989
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
Eam1104I	CTCTTC	4 cut(s)	43, 599, 701, 763
EarI	CTCTTC	4 cut(s)	43, 599, 701, 763
Eco147I	AGGCCT	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	754
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	553, 592
FaeI	CATG	4 cut(s)	64, 242, 848, 925
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	4 cut(s)	60, 238, 844, 921
FauI	CCCGC	1 cut(s)	656
FblI	GTMKAC	1 cut(s)	876
Fnu4HI	GCNGC	2 cut(s)	124, 495
Fsp4HI	GCNGC	2 cut(s)	124, 495
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	2 cut(s)	124, 495
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	525
HgaI	GACGC	1 cut(s)	845
Hin1II	CATG	4 cut(s)	64, 242, 848, 925
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	4 cut(s)	255, 365, 848, 937
HphI	GGTGA	2 cut(s)	20, 1012
Hpy166II	GTNNAC	3 cut(s)	229, 625, 877
Hpy188I	TCNGA	4 cut(s)	40, 682, 737, 975
Hpy188III	TCNNGA	8 cut(s)	160, 175, 373, 728, 845, 860, 922, 941
Hpy8I	GTNNAC	3 cut(s)	229, 625, 877
HpyAV	CCTTC	2 cut(s)	11, 238
HpyCH4III	ACNGT	3 cut(s)	453, 932, 1009
HpyCH4IV	ACGT	2 cut(s)	216, 499
HpyCH4V	TGCA	6 cut(s)	146, 269, 433, 497, 535, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 120
HpyF3I	CTNAG	2 cut(s)	681, 939
HpySE526I	ACGT	2 cut(s)	216, 499
Hsp92II	CATG	4 cut(s)	64, 242, 848, 925
KpnI	GGTACC	2 cut(s)	696, 899
Kzo9I	GATC	4 cut(s)	63, 515, 639, 989
LguI	GCTCTTC	1 cut(s)	701
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	2 cut(s)	216, 499
MaeIII	GTNAC	2 cut(s)	565, 646
MalI	GATC	4 cut(s)	65, 517, 641, 991
MboI	GATC	4 cut(s)	63, 515, 639, 989
MfeI	CAATTG	2 cut(s)	297, 480
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	9 cut(s)	33, 297, 321, 379, 480, 615, 630, 838, 865
MlyI	GAGTC	2 cut(s)	249, 931
MmeI	TCCRAC	2 cut(s)	232, 328
MnlI	CCTC	8 cut(s)	187, 355, 600, 604, 745, 764, 767, 963
MseI	TTAA	5 cut(s)	213, 471, 747, 966, 996
MslI	CAYNNNNRTG	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	563
MspCI	CTTAAG	1 cut(s)	995
MspR9I	CCNGG	2 cut(s)	555, 594
MunI	CAATTG	2 cut(s)	297, 480
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	2 cut(s)	555, 594
MvnI	CGCG	2 cut(s)	114, 123
MwoI	GCNNNNNNNGC	2 cut(s)	88, 120
NdeII	GATC	4 cut(s)	63, 515, 639, 989
NlaIII	CATG	4 cut(s)	64, 242, 848, 925
NlaIV	GGNNCC	2 cut(s)	694, 897
NmeAIII	GCCGAG	1 cut(s)	738
NmuCI	GTSAC	1 cut(s)	565
PagI	TCATGA	2 cut(s)	844, 921
PceI	AGGCCT	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	365, 848
PkrI	GCNGC	2 cut(s)	125, 496
PleI	GAGTC	2 cut(s)	249, 931
PpsI	GAGTC	2 cut(s)	249, 931
PpuMI	RGGWCCY	1 cut(s)	754
PshBI	ATTAAT	1 cut(s)	966
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	2 cut(s)	553, 592
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	2 cut(s)	553, 592
PspN4I	GGNNCC	2 cut(s)	694, 897
PspPI	GGNCC	1 cut(s)	754
PspPPI	RGGWCCY	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	3 cut(s)	668, 694, 897
RsaNI	GTAC	3 cut(s)	667, 693, 896
RseI	CAYNNNNRTG	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	701
SaqAI	TTAA	5 cut(s)	213, 471, 747, 966, 996
SatI	GCNGC	2 cut(s)	124, 495
Sau3AI	GATC	4 cut(s)	63, 515, 639, 989
Sau96I	GGNCC	1 cut(s)	754
SchI	GAGTC	2 cut(s)	249, 931
ScrFI	CCNGG	2 cut(s)	555, 594
SduI	GDGCHC	1 cut(s)	84
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	2 cut(s)	519, 793
SinI	GGWCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
Sse9I	AATT	9 cut(s)	33, 297, 321, 379, 480, 615, 630, 838, 865
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	3 cut(s)	112, 123, 663
SspMI	CTAG	1 cut(s)	660
StuI	AGGCCT	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	553, 592
TaaI	ACNGT	3 cut(s)	453, 932, 1009
TaiI	ACGT	2 cut(s)	219, 502
TasI	AATT	9 cut(s)	33, 297, 321, 379, 480, 615, 630, 838, 865
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	365, 848
Tru1I	TTAA	5 cut(s)	213, 471, 747, 966, 996
Tru9I	TTAA	5 cut(s)	213, 471, 747, 966, 996
TscAI	CASTG	4 cut(s)	148, 649, 724, 825
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	7 cut(s)	227, 423, 719, 792, 833, 861, 938
TspRI	CASTG	4 cut(s)	148, 649, 724, 825
Vha464I	CTTAAG	1 cut(s)	995
VpaK11BI	GGWCC	1 cut(s)	754
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	3 cut(s)	33, 379, 615
XmiI	GTMKAC	1 cut(s)	876
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.