pycom15g01900

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
1089645 .. 1093149
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g01900.7

Sequence Viewer

Length: 1344 bp
ATGATCTCTCAGTTCTTCGTTCTCTCGCAGAGAGGCGACAACATCGTCTTCCGCGACTATCGCGGCGAAGTGCCGAAGGGAAGCGCCGAGATTTTCTTCCGGAAAGTGAAATTCTGGAAGGACGACGGCGACGGCGACGCGCCACCTGTCTTTAATGTGGACGGTGTAAATTACTTTCATGTGAAAGATGCTGGGTTGTTATTTGTTGCGACGACGAGAGTGAATCTGTCGCCTTCTCTTGTTTTGGAACTTTTGAGAAGGATTTCTAGAGTCGTTAAAGATTACCTCGGGGTCCTTAGCGAAGAATCGCTGCGAAAAAATTTCGTGCTTGTGTACGAGTTGCTGGACCAAATCATTGATTTCGGTTATGTGCAAACTACTTCGACTGAGCTTTTGAAGTCATATGTGTTCAATGAGCCGGTTGTGGTTGATCCTGCGCAGTTTCTGCCTCTGGGTTCTGCTGGAATTTTTACGGCTAAAAGAATGCCAGTAACTACAATCGCAAAATCTGTTGTTGCAAATGAGCGGGGAGGTAGGAAGAGAGAGGAAATTTTTGTGGACATAATTGAAAAAATGAGTGTTACATTCAATTCCAGTGGATATATACTTACTTCTGAGATTGATGGTACCATCCAATTGAAGAGTTATCTCACAGGCAATCCAGAAATTCGACTGGCTCTTAATGAGGAAGTGAGTATTGGAAGAGGTGGAGGGTCAGCCTATGATTATGGTTTAGGAACAGGGGCTGTTATACTGGACGATTGTAATTTCCATGAATCTGTACATCTCGATAGTTTCGATGTTGACCGAACACTTTCATTGGTACCAACAGATGGTGAGTTTCCAGTCATGAATTACCGCATCACTCAGGAGTTCAAGCCTCCCTTTCGTATTAATTCGTTAATTGAAGAAGCTGGACCGCTTAAGGCTGGAGTGATTATTAAAGTGCGTGCTGATTTCCCTTCAAGCATTATTGCAGATAAAATCCTTGTGCAGATTCCACTGCCACCATATACAACTAGGGTTAGTTTTGAGTTGGAACCTGGAGCAGTTGGAAACACAACTGATTTTAAGGAAGCAAACAAAAGAATTGAATGGGGTTTAAAGAAGATTGTTGGTGGATCTGAACATACATTACACGCAAAGCTGACATTTTCACAAGAATCACATGGAAATATTACCAAAGAAGCTGGACCTGTTAGCATGACCTTCACAATACCCATGTTCAATTCTTCAAGGCTTCAGGTAAAATACTTGCATATAACAAAGAAGTCGAAGAGCTACAACCCATATCGATGGGTGAGATATGTTACACACTCAAATTCCTATGTCGCCCGGTTGTAA

Protein Analysis

448

Amino Acids

50.06

Weight (kDa)

7.11

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
Acc16I TGCGCA 1 cut(s) 438
Acc65I GGTACC 2 cut(s) 626, 823
AccB1I GGYRCC 2 cut(s) 626, 823
AccB7I CCANNNNNTGG 1 cut(s) 833
AccBSI CCGCTC 1 cut(s) 526
AccII CGCG 3 cut(s) 54, 63, 140
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 5 cut(s) 52, 63, 526, 859, 920
AclWI GGATC 2 cut(s) 425, 1129
AcsI RAATTY 6 cut(s) 110, 319, 465, 549, 666, 1321
AcuI CTGAAG 1 cut(s) 1226
AfaI GTAC 4 cut(s) 335, 628, 783, 825
AfiI CCNNNNNNNGG 1 cut(s) 833
AflII CTTAAG 1 cut(s) 923
AjnI CCWGG 1 cut(s) 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 681, 713
AluBI AGCT 5 cut(s) 391, 914, 1147, 1190, 1281
AluI AGCT 5 cut(s) 391, 914, 1147, 1190, 1281
AlwI GGATC 2 cut(s) 425, 1129
AlwNI CAGNNNCTG 2 cut(s) 445, 746
Ama87I CYCGRG 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 6 cut(s) 110, 319, 465, 549, 666, 1321
ArsI GACNNNNNNTTYG 2 cut(s) 376, 408
AseI ATTAAT 1 cut(s) 894
Asp700I GAANNNNTTC 2 cut(s) 262, 814
Asp718I GGTACC 2 cut(s) 626, 823
AspLEI GCGC 3 cut(s) 86, 142, 439
AspS9I GGNCC 4 cut(s) 292, 346, 917, 1193
AsuC2I CCSGG 1 cut(s) 1336
AsuHPI GGTGA 2 cut(s) 848, 1312
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 4 cut(s) 292, 346, 917, 1193
BanI GGYRCC 2 cut(s) 626, 823
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 297
BccI CCATC 4 cut(s) 617, 638, 827, 1290
BceAI ACGGC 3 cut(s) 142, 148, 489
BciT130I CCWGG 1 cut(s) 1044
BcnI CCSGG 1 cut(s) 1336
BfaI CTAG 2 cut(s) 267, 1020
BfoI RGCGCY 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 923
BisI GCNGC 2 cut(s) 64, 311
BlsI GCNGC 2 cut(s) 65, 312
Bme1390I CCNGG 2 cut(s) 1044, 1336
Bme18I GGWCC 4 cut(s) 292, 346, 917, 1193
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 292, 346, 917, 1193
BmiI GGNNCC 4 cut(s) 293, 628, 825, 1041
BmrFI CCNGG 2 cut(s) 1044, 1336
BmsI GCATC 2 cut(s) 178, 870
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 2 cut(s) 951, 1065
Bpu10I CCTNAGC 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 1336
Bsa29I ATCGAT 1 cut(s) 1294
BsaJI CCNNGG 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 833
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 5 cut(s) 488, 594, 678, 759, 845
BseAI TCCGGA 1 cut(s) 99
BseBI CCWGG 1 cut(s) 1044
BseCI ATCGAT 1 cut(s) 1294
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 630
BseLI CCNNNNNNNGG 1 cut(s) 833
BseMII CTCAG 4 cut(s) 23, 378, 606, 881
BseNI ACTGG 5 cut(s) 488, 594, 678, 759, 845
BseXI GCAGC 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 1013
Bsh1236I CGCG 3 cut(s) 54, 63, 140
BshNI GGYRCC 2 cut(s) 626, 823
BshVI ATCGAT 1 cut(s) 1294
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 3 cut(s) 100, 419, 1336
BslI CCNNNNNNNGG 1 cut(s) 833
BsmI GAATGC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 287
Bsp13I TCCGGA 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 3 cut(s) 3, 430, 1121
BspACI CCGC 5 cut(s) 52, 63, 526, 859, 920
BspCNI CTCAG 4 cut(s) 22, 379, 607, 880
BspDI ATCGAT 1 cut(s) 1294
BspEI TCCGGA 1 cut(s) 99
BspFNI CGCG 3 cut(s) 54, 63, 140
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 4 cut(s) 293, 628, 825, 1041
BspPI GGATC 2 cut(s) 425, 1129
BspQI GCTCTTC 1 cut(s) 1271
BspT107I GGYRCC 2 cut(s) 626, 823
BspTI CTTAAG 1 cut(s) 923
BsrBI CCGCTC 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 418
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 5 cut(s) 488, 594, 678, 759, 845
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 3 cut(s) 3, 430, 1121
Bst2UI CCWGG 1 cut(s) 1044
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 4 cut(s) 533, 635, 697, 1271
BstAFI CTTAAG 1 cut(s) 923
BstAPI GCANNNNNTGC 1 cut(s) 445
BstAUI TGTACA 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 951
BstDEI CTNAG 5 cut(s) 9, 296, 387, 615, 867
BstF5I GGATG 1 cut(s) 630
BstFNI CGCG 3 cut(s) 54, 63, 140
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 3 cut(s) 86, 142, 439
BstKTI GATC 3 cut(s) 6, 433, 1124
BstMBI GATC 3 cut(s) 3, 430, 1121
BstMWI GCNNNNNNNGC 2 cut(s) 60, 445
BstNI CCWGG 1 cut(s) 1044
BstSCI CCNGG 2 cut(s) 1042, 1334
BstUI CGCG 3 cut(s) 54, 63, 140
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 1121
BstXI CCANNNNNNTGG 1 cut(s) 1296
BstYI RGATCY 1 cut(s) 1121
Bsu15I ATCGAT 1 cut(s) 1294
BsuTUI ATCGAT 1 cut(s) 1294
BtsCI GGATG 1 cut(s) 630
BtsI GCAGTG 1 cut(s) 1001
BtsIMutI CAGTG 2 cut(s) 601, 1001
Cac8I GCNNGC 1 cut(s) 951
CaiI CAGNNNCTG 2 cut(s) 445, 746
CciI TCATGA 1 cut(s) 849
CfoI GCGC 3 cut(s) 86, 142, 439
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 4 cut(s) 292, 346, 917, 1193
ClaI ATCGAT 1 cut(s) 1294
CseI GACGC 1 cut(s) 146
Csp6I GTAC 4 cut(s) 334, 627, 782, 824
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 6 cut(s) 179, 773, 850, 1169, 1204, 1222
CviQI GTAC 4 cut(s) 334, 627, 782, 824
DdeI CTNAG 5 cut(s) 9, 296, 387, 615, 867
DpnI GATC 3 cut(s) 5, 432, 1123
DpnII GATC 3 cut(s) 3, 430, 1121
DraI TTTAAA 1 cut(s) 1104
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 4 cut(s) 533, 635, 697, 1271
EarI CTCTTC 4 cut(s) 533, 635, 697, 1271
Eco47I GGWCC 4 cut(s) 292, 346, 917, 1193
Eco57I CTGAAG 1 cut(s) 1226
Eco88I CYCGRG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 1042
FaeI CATG 6 cut(s) 182, 776, 853, 1172, 1207, 1225
FalI AAGNNNNNCTT 2 cut(s) 869, 901
FatI CATG 6 cut(s) 178, 772, 849, 1168, 1203, 1221
FauI CCCGC 1 cut(s) 519
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 64, 311
FokI GGATG 1 cut(s) 617
Fsp4HI GCNGC 2 cut(s) 64, 311
FspBI CTAG 2 cut(s) 267, 1020
FspI TGCGCA 1 cut(s) 438
GlaI GCGC 3 cut(s) 85, 141, 438
GluI GCNGC 2 cut(s) 64, 311
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 951, 1065
HaeII RGCGCY 1 cut(s) 87
HapII CCGG 3 cut(s) 100, 419, 1336
HgaI GACGC 1 cut(s) 146
HhaI GCGC 3 cut(s) 86, 142, 439
Hin1II CATG 6 cut(s) 182, 776, 853, 1172, 1207, 1225
Hin6I GCGC 3 cut(s) 84, 140, 437
HinP1I GCGC 3 cut(s) 84, 140, 437
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 6 cut(s) 223, 270, 305, 776, 997, 1163
HpaII CCGG 3 cut(s) 100, 419, 1336
HphI GGTGA 2 cut(s) 848, 1312
Hpy166II GTNNAC 4 cut(s) 160, 334, 559, 805
Hpy188I TCNGA 2 cut(s) 616, 1126
Hpy188III TCNNGA 7 cut(s) 100, 115, 267, 662, 788, 850, 869
Hpy8I GTNNAC 4 cut(s) 160, 334, 559, 805
Hpy99I CGWCG 5 cut(s) 128, 134, 140, 214, 217
HpyAV CCTTC 6 cut(s) 70, 112, 243, 252, 972, 1219
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 5 cut(s) 373, 518, 977, 994, 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 445
HpyF3I CTNAG 5 cut(s) 9, 296, 387, 615, 867
Hsp92II CATG 6 cut(s) 182, 776, 853, 1172, 1207, 1225
HspAI GCGC 3 cut(s) 84, 140, 437
Kpn2I TCCGGA 1 cut(s) 99
KpnI GGTACC 2 cut(s) 630, 827
Kzo9I GATC 3 cut(s) 3, 430, 1121
LguI GCTCTTC 1 cut(s) 1271
LmnI GCTCC 1 cut(s) 1046
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 178, 870
MaeI CTAG 2 cut(s) 267, 1020
MaeIII GTNAC 3 cut(s) 490, 580, 1309
MalI GATC 3 cut(s) 5, 432, 1123
MbiI CCGCTC 1 cut(s) 526
MboI GATC 3 cut(s) 3, 430, 1121
MfeI CAATTG 1 cut(s) 635
MflI RGATCY 1 cut(s) 1121
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 1017, 1033
MnlI CCTC 9 cut(s) 26, 296, 459, 524, 538, 679, 698, 704, 891
MroI TCCGGA 1 cut(s) 99
MroXI GAANNNNTTC 2 cut(s) 262, 814
MseI TTAA 9 cut(s) 153, 276, 681, 894, 902, 924, 942, 1071, 1103
MslI CAYNNNNRTG 1 cut(s) 1294
MspCI CTTAAG 1 cut(s) 923
MspI CCGG 3 cut(s) 100, 419, 1336
MspR9I CCNGG 2 cut(s) 1044, 1336
MunI CAATTG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 1 cut(s) 1044
MvnI CGCG 3 cut(s) 54, 63, 140
MwoI GCNNNNNNNGC 2 cut(s) 60, 445
NciI CCSGG 1 cut(s) 1336
NdeI CATATG 1 cut(s) 403
NdeII GATC 3 cut(s) 3, 430, 1121
NlaIII CATG 6 cut(s) 182, 776, 853, 1172, 1207, 1225
NlaIV GGNNCC 4 cut(s) 293, 628, 825, 1041
NmeAIII GCCGAG 1 cut(s) 112
NsbI TGCGCA 1 cut(s) 438
PagI TCATGA 1 cut(s) 849
PciSI GCTCTTC 1 cut(s) 1271
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 132, 795
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 2 cut(s) 262, 814
PfeI GAWTC 5 cut(s) 223, 305, 776, 997, 1163
PflMI CCANNNNNTGG 1 cut(s) 833
PkrI GCNGC 2 cut(s) 65, 312
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PpuMI RGGWCCY 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 894
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 1042
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 4 cut(s) 293, 628, 825, 1041
PspPI GGNCC 4 cut(s) 292, 346, 917, 1193
PspPPI RGGWCCY 1 cut(s) 292
PsrI GAACNNNNNNTAC 2 cut(s) 1119, 1151
PstNI CAGNNNCTG 2 cut(s) 445, 746
PsuI RGATCY 1 cut(s) 1121
RsaI GTAC 4 cut(s) 335, 628, 783, 825
RsaNI GTAC 4 cut(s) 334, 627, 782, 824
RseI CAYNNNNRTG 1 cut(s) 1294
SapI GCTCTTC 1 cut(s) 1271
SaqAI TTAA 9 cut(s) 153, 276, 681, 894, 902, 924, 942, 1071, 1103
SatI GCNGC 2 cut(s) 64, 311
Sau3AI GATC 3 cut(s) 3, 430, 1121
Sau96I GGNCC 4 cut(s) 292, 346, 917, 1193
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 1044, 1336
SfaNI GCATC 2 cut(s) 178, 870
SinI GGWCC 4 cut(s) 292, 346, 917, 1193
SmiMI CAYNNNNRTG 1 cut(s) 1294
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
SsiI CCGC 5 cut(s) 52, 63, 526, 859, 920
SspI AATATT 1 cut(s) 1177
SspMI CTAG 2 cut(s) 267, 1020
StyD4I CCNGG 2 cut(s) 1042, 1334
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 6 cut(s) 383, 670, 789, 798, 1274, 1294
TaqII GACCGA 1 cut(s) 822
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 5 cut(s) 223, 305, 776, 997, 1163
Tru1I TTAA 9 cut(s) 153, 276, 681, 894, 902, 924, 942, 1071, 1103
Tru9I TTAA 9 cut(s) 153, 276, 681, 894, 902, 924, 942, 1071, 1103
TscAI CASTG 2 cut(s) 601, 1008
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 167, 789, 807, 866
TspRI CASTG 2 cut(s) 601, 1008
Van91I CCANNNNNTGG 1 cut(s) 833
Vha464I CTTAAG 1 cut(s) 923
VpaK11BI GGWCC 4 cut(s) 292, 346, 917, 1193
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 6 cut(s) 110, 319, 465, 549, 666, 1321
XbaI TCTAGA 1 cut(s) 266
XmnI GAANNNNTTC 2 cut(s) 262, 814
XspI CTAG 2 cut(s) 267, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.