Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040036.1

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1633

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040036.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 644 bp

atgagacatacgaataaggtcgttgcatatgaattgctggaatttattgtttgttctgatgtttttggtgggatgtgtgaaaagaatgtggatggtgtgaactattttcacgtgaaggaagctggactgttctttgttgcgacgacgagagtgaatgtgtcgccttctctggttttggaacttttgagaaggattgcgagagtcattaaagattaccttggggttcttagtgaagaatcgttgcgaaaaaactttgtgcttgtgtatgagttgctggaccaagttattgattttggttttgtgcaaacgacttcaactgaggttttgaagtcgtatgtgttcaatgagccgattgcggttgctgctgaccatttacaaccccttggtcctgccgccatttttatggccaaaagaatgcctgtgacaaccatcacaaaatctgttgtagctaatgagcgtgggggtaggaagagagaggagatttttgtggacataattgagaatctgagtgtcacattcagttccagtgggtatatacttacttctgaaattgatggtactattcaattgaagagttatctgacaggcaatccagacattcgacttgctcttaatgaggaagtgagtataggaagagatggagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006605 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0030117 GO:0030119 GO:0030124 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072657 GO:0090160 GO:0097708 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

215

Amino Acids

23.9

Weight (kDa)

5.32

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	356, 393
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	41
AcvI	CACGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	315, 328, 343, 566, 571
AluBI	AGCT	2 cut(s)	122, 449
AluI	AGCT	2 cut(s)	122, 449
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	277, 386
AvaII	GGWCC	2 cut(s)	277, 386
BalI	TGGCCA	1 cut(s)	407
BbrPI	CACGTG	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	4 cut(s)	86, 437, 548, 632
BisI	GCNGC	2 cut(s)	363, 393
BlsI	GCNGC	2 cut(s)	364, 394
Bme18I	GGWCC	2 cut(s)	277, 386
BmgT120I	GGNCC	2 cut(s)	277, 386
BsaAI	YACGTR	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	217, 382
Bse1I	ACTGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	217, 382
BseGI	GGATG	2 cut(s)	78, 97
BseMII	CTCAG	2 cut(s)	309, 497
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	407
BspACI	CCGC	2 cut(s)	356, 393
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	2 cut(s)	310, 498
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	217, 382
BssT1I	CCWWGG	2 cut(s)	217, 382
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	3 cut(s)	464, 566, 628
BstBAI	YACGTR	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	227, 318, 506
BstF5I	GGATG	2 cut(s)	78, 97
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	78, 97
BtsIMutI	CAGTG	1 cut(s)	532
Cfr13I	GGNCC	2 cut(s)	277, 386
Csp6I	GTAC	1 cut(s)	558
CviJI	RGCY	4 cut(s)	122, 349, 407, 449
CviKI_1	RGCY	4 cut(s)	122, 349, 407, 449
CviQI	GTAC	1 cut(s)	558
DdeI	CTNAG	3 cut(s)	227, 318, 506
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	3 cut(s)	464, 566, 628
EarI	CTCTTC	3 cut(s)	464, 566, 628
Eco130I	CCWWGG	2 cut(s)	217, 382
Eco47I	GGWCC	2 cut(s)	277, 386
Eco72I	CACGTG	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	217, 382
ErhI	CCWWGG	2 cut(s)	217, 382
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FauNDI	CATATG	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	363, 393
FokI	GGATG	2 cut(s)	85, 104
Fsp4HI	GCNGC	2 cut(s)	363, 393
GluI	GCNGC	2 cut(s)	363, 393
HaeIII	GGCC	1 cut(s)	407
HinfI	GANTC	3 cut(s)	201, 236, 502
Hpy166II	GTNNAC	2 cut(s)	100, 490
Hpy188I	TCNGA	4 cut(s)	58, 507, 547, 582
Hpy188III	TCNNGA	1 cut(s)	593
Hpy8I	GTNNAC	2 cut(s)	100, 490
Hpy99I	CGWCG	2 cut(s)	145, 148
HpyAV	CCTTC	3 cut(s)	109, 174, 183
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	26, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	227, 318, 506
HpySE526I	ACGT	1 cut(s)	111
LpnPI	CCDG	9 cut(s)	23, 108, 155, 260, 402, 432, 538, 570, 606
Lsp1109I	GCAGC	1 cut(s)	349
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	421, 511
MboII	GAAGA	3 cut(s)	245, 481, 583
MfeI	CAATTG	1 cut(s)	566
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	5 cut(s)	32, 41, 495, 549, 566
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	4 cut(s)	313, 469, 610, 635
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	2 cut(s)	207, 612
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	407
MunI	CAATTG	1 cut(s)	566
Mva1269I	GAATGC	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeI	CATATG	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	421, 511
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	236, 502
PkrI	GCNGC	2 cut(s)	364, 394
PleI	GAGTC	1 cut(s)	209
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	112
PspCI	CACGTG	1 cut(s)	112
PspPI	GGNCC	2 cut(s)	277, 386
RsaI	GTAC	1 cut(s)	559
RsaNI	GTAC	1 cut(s)	558
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	207, 612
SatI	GCNGC	2 cut(s)	363, 393
Sau96I	GGNCC	2 cut(s)	277, 386
SchI	GAGTC	1 cut(s)	210
SetI	ASST	6 cut(s)	21, 114, 124, 219, 324, 451
SinI	GGWCC	2 cut(s)	277, 386
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	5 cut(s)	32, 41, 495, 549, 566
SsiI	CCGC	2 cut(s)	356, 393
StyI	CCWWGG	2 cut(s)	217, 382
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	601
TasI	AATT	5 cut(s)	32, 41, 495, 549, 566
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	236, 502
Tru1I	TTAA	2 cut(s)	207, 612
Tru9I	TTAA	2 cut(s)	207, 612
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	2 cut(s)	421, 511
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	2 cut(s)	421, 511
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	2 cut(s)	277, 386
XapI	RAATTY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.