MD15G1384200.v1.1

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
47387529 .. 47394371
6843 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1384200.v1.1.491

Sequence Viewer

Length: 1356 bp
ATGATCTCGCAGTTCTTCCTGCTCTCGCAGCGTGGCGACAATATCGTCTTCCGCGACTATCGCGGAGAAGTTCCTAAAGGAAGCGCGGAGATATTTTTCAGGAAAGTGAAGTTTTGGAAAGAAGATGGGCAAGAGGAAGCACCCCCTGTCTTTAACGTGGATGGTGTCAACTACTTTCATGTGAAGGTTGTTGGACTATTGTTTGTCGCAACCACAAGAGCTAATGTATCACCATCTCTTGTCTTGGAACTTCTACAAAGAATTGCCCGTGTCATCAAAGATTATGTTGGGGTTCTCAATGAAGATTCTATAAGGAAGAATTTTGTGCTTGTGTATGAGTTGCTTGATGAAGTCATAGATTTTGGCTTTGTGCAAACAACATCAACTGAATTGTTGAAGTCTTATATATTTAATGAGCCAATTGTTCTCGAATCTGCGCGTTTATCATCTATTGGCCCTACTGGCCTTTTTATGCAAGGGACGAAGAGAATGCCTGGAACAGCTGTCACAAAATCAGTTGTTGCAAATGAGCCTGGTGGCAGGAAGAGGGAGGAAATTTTTGTGGATATAATCGAGAAGATCAGTGTTACTTTCAGCTCTAGTGGGTACATATTGACTTCTGAAATTGATGGAACCATTCAAATGAAGAGCTATCTCTCAGGAAATCCAGAAATCCGATTAGCTCTCAATGAGGATCTGGGCATAGGAAGAGGTGGAGGGTCAGGCTATGACCATAGGAGTTCATTTGGATCAGGAGCGGTGGTACTTGATGATTGCAATTTTCATGAATCTGTACGTCTTGATAATTTTGAAGTAGACAAAACTCTGACCCTGGTGCCCCCTGACGGTGAATTTCCTGTCATGAACTACCGTATGACTCAAGAGTTCAAGCCCCCTTTTCGTATTAATGCGTTGATTGAAGAAAAAGGAGCTCATAAGGCTGAAGTGATTCTGAAAATATATGCCGAGTTCCCCTCGAACATTACTTCCAACACAATTGCTATACAAATGCCGCTACCTAAATATACTATCAGAGCCAGTTTTGAGTTGGAACCAGGAGCAGTCGGACAAACAACAGATTTCAAGGATGCCAATAAGAGACTTGAATGGGGTTTAAAGAAGATTGTTGGTGGATCTGAACATACGCTACGTGCCAGACTTACATTTTCACCGGATGCACATGGAAATATTACAAAAGAATCTGGACCAGTTAGCATGACATTTACAATACCTATGTATAATTCTTCAAGACTTCAGGTAAAGTACTTGCAGATAGCAAAGAATTCTGGAACTTATAATCCATACCGGTGGGTAAGATATGTTACTCTCGCCAATTCATACGTTGCTCGGATATGA

Protein Analysis

452

Amino Acids

50.53

Weight (kDa)

7.04

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 182 - 451 1.5e-74 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1296
AasI GACNNNNNNGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 835
AccBSI CCGCTC 1 cut(s) 758
AccI GTMKAC 1 cut(s) 816
AccII CGCG 4 cut(s) 54, 63, 86, 439
AciI CCGC 5 cut(s) 52, 63, 86, 758, 1013
AclWI GGATC 3 cut(s) 702, 757, 1141
AcsI RAATTY 4 cut(s) 319, 555, 851, 1282
AcuI CTGAAG 2 cut(s) 963, 1238
AfaI GTAC 4 cut(s) 608, 765, 795, 1265
AfiI CCNNNNNNNGG 1 cut(s) 845
AgeI ACCGGT 1 cut(s) 1305
AgsI TTSAA 8 cut(s) 397, 641, 812, 889, 920, 1084, 1106, 1248
AjnI CCWGG 4 cut(s) 493, 532, 831, 1054
AloI GAACNNNNNNTCC 4 cut(s) 971, 1003, 1282, 1314
AluBI AGCT 6 cut(s) 221, 503, 597, 651, 683, 932
AluI AGCT 6 cut(s) 221, 503, 597, 651, 683, 932
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 1 cut(s) 1093
AlwI GGATC 3 cut(s) 702, 757, 1141
AoxI GGCC 2 cut(s) 454, 463
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 4 cut(s) 319, 555, 851, 1282
AseI ATTAAT 1 cut(s) 906
AsiGI ACCGGT 1 cut(s) 1305
Asp700I GAANNNNTTC 1 cut(s) 948
AspLEI GCGC 2 cut(s) 86, 439
AspS9I GGNCC 2 cut(s) 455, 1205
AsuHPI GGTGA 3 cut(s) 222, 860, 1161
AvaII GGWCC 1 cut(s) 1205
BaeGI GKGCMC 1 cut(s) 840
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 1 cut(s) 934
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 1 cut(s) 40
BccI CCATC 4 cut(s) 119, 155, 241, 623
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 4 cut(s) 495, 534, 833, 1056
BcoDI GTCTC 1 cut(s) 1093
BfaI CTAG 1 cut(s) 600
BglI GCCNNNNNGGC 1 cut(s) 462
BisI GCNGC 2 cut(s) 29, 1013
BlsI GCNGC 2 cut(s) 30, 1014
BmcAI AGTACT 1 cut(s) 1265
Bme1390I CCNGG 4 cut(s) 495, 534, 833, 1056
Bme18I GGWCC 1 cut(s) 1205
BmgT120I GGNCC 2 cut(s) 455, 1205
BmiI GGNNCC 3 cut(s) 634, 837, 1053
BmrFI CCNGG 4 cut(s) 495, 534, 833, 1056
BmsI GCATC 2 cut(s) 1078, 1165
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpuEI CTTGAG 1 cut(s) 864
BsaAI YACGTR 1 cut(s) 1151
BsaJI CCNNGG 1 cut(s) 831
BsaWI WCCGGW 2 cut(s) 1171, 1305
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 1 cut(s) 845
Bse118I RCCGGY 1 cut(s) 1305
Bse1I ACTGG 3 cut(s) 466, 1038, 1208
BseBI CCWGG 4 cut(s) 495, 534, 833, 1056
BseDI CCNNGG 1 cut(s) 831
BseGI GGATG 3 cut(s) 166, 1093, 1180
BseLI CCNNNNNNNGG 1 cut(s) 845
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 466, 1038, 1208
BseSI GKGCMC 1 cut(s) 840
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 4 cut(s) 54, 63, 86, 439
BshFI GGCC 2 cut(s) 456, 465
BshNI GGYRCC 1 cut(s) 835
BshTI ACCGGT 1 cut(s) 1305
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 2 cut(s) 1172, 1306
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 845
BsmAI GTCTC 1 cut(s) 1093
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 2 cut(s) 456, 465
Bsp1286I GDGCHC 2 cut(s) 840, 934
Bsp143I GATC 5 cut(s) 3, 579, 694, 749, 1133
BspACI CCGC 5 cut(s) 52, 63, 86, 758, 1013
BspANI GGCC 2 cut(s) 456, 465
BspCNI CTCAG 1 cut(s) 671
BspFNI CGCG 4 cut(s) 54, 63, 86, 439
BspHI TCATGA 2 cut(s) 784, 861
BspLI GGNNCC 3 cut(s) 634, 837, 1053
BspPI GGATC 3 cut(s) 702, 757, 1141
BspQI GCTCTTC 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 835
BsrBI CCGCTC 1 cut(s) 758
BsrFI RCCGGY 1 cut(s) 1305
BsrI ACTGG 3 cut(s) 466, 1038, 1208
BssAI RCCGGY 1 cut(s) 1305
BssECI CCNNGG 1 cut(s) 831
BssMI GATC 5 cut(s) 3, 579, 694, 749, 1133
Bst2UI CCWGG 4 cut(s) 495, 534, 833, 1056
Bst4CI ACNGT 2 cut(s) 848, 872
Bst6I CTCTTC 4 cut(s) 479, 539, 641, 703
BstBAI YACGTR 1 cut(s) 1151
BstDEI CTNAG 1 cut(s) 658
BstF5I GGATG 3 cut(s) 166, 1093, 1180
BstFNI CGCG 4 cut(s) 54, 63, 86, 439
BstHHI GCGC 2 cut(s) 86, 439
BstKTI GATC 5 cut(s) 6, 582, 697, 752, 1136
BstMAI GTCTC 1 cut(s) 1093
BstMBI GATC 5 cut(s) 3, 579, 694, 749, 1133
BstMWI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
BstNI CCWGG 4 cut(s) 495, 534, 833, 1056
BstSCI CCNGG 4 cut(s) 493, 532, 831, 1054
BstSLI GKGCMC 1 cut(s) 840
BstUI CGCG 4 cut(s) 54, 63, 86, 439
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 694, 1133
BstXI CCANNNNNNTGG 1 cut(s) 1308
BstYI RGATCY 2 cut(s) 694, 1133
BsuRI GGCC 2 cut(s) 456, 465
BtsCI GGATG 3 cut(s) 166, 1093, 1180
BtsIMutI CAGTG 1 cut(s) 589
CciI TCATGA 2 cut(s) 784, 861
CfoI GCGC 2 cut(s) 86, 439
Cfr10I RCCGGY 1 cut(s) 1305
Cfr13I GGNCC 2 cut(s) 455, 1205
Csp6I GTAC 4 cut(s) 607, 764, 794, 1264
CspAI ACCGGT 1 cut(s) 1305
CviAII CATG 5 cut(s) 179, 785, 862, 1181, 1216
CviQI GTAC 4 cut(s) 607, 764, 794, 1264
DdeI CTNAG 1 cut(s) 658
DpnI GATC 5 cut(s) 5, 581, 696, 751, 1135
DpnII GATC 5 cut(s) 3, 579, 694, 749, 1133
DraI TTTAAA 1 cut(s) 1116
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 4 cut(s) 479, 539, 641, 703
EarI CTCTTC 4 cut(s) 479, 539, 641, 703
Ecl136II GAGCTC 1 cut(s) 932
Eco24I GRGCYC 1 cut(s) 934
Eco47I GGWCC 1 cut(s) 1205
Eco53kI GAGCTC 1 cut(s) 932
Eco57I CTGAAG 2 cut(s) 963, 1238
EcoICRI GAGCTC 1 cut(s) 932
EcoRI GAATTC 1 cut(s) 1282
EcoRII CCWGG 4 cut(s) 493, 532, 831, 1054
EcoT38I GRGCYC 1 cut(s) 934
FaeI CATG 5 cut(s) 182, 788, 865, 1184, 1219
FaqI GGGAC 1 cut(s) 493
FatI CATG 5 cut(s) 178, 784, 861, 1180, 1215
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 2 cut(s) 29, 1013
FokI GGATG 3 cut(s) 173, 1100, 1187
FriOI GRGCYC 1 cut(s) 934
Fsp4HI GCNGC 2 cut(s) 29, 1013
FspBI CTAG 1 cut(s) 600
GlaI GCGC 2 cut(s) 85, 438
GluI GCNGC 2 cut(s) 29, 1013
HaeIII GGCC 2 cut(s) 456, 465
HapII CCGG 2 cut(s) 1172, 1306
HhaI GCGC 2 cut(s) 86, 439
Hin1II CATG 5 cut(s) 182, 788, 865, 1184, 1219
Hin6I GCGC 2 cut(s) 84, 437
HinP1I GCGC 2 cut(s) 84, 437
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 6 cut(s) 305, 431, 788, 877, 949, 1199
HpaII CCGG 2 cut(s) 1172, 1306
HphI GGTGA 3 cut(s) 222, 860, 1161
Hpy166II GTNNAC 2 cut(s) 169, 817
Hpy188I TCNGA 8 cut(s) 622, 677, 828, 954, 1034, 1067, 1138, 1350
Hpy8I GTNNAC 2 cut(s) 169, 817
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 848, 872
HpyCH4IV ACGT 4 cut(s) 156, 796, 1150, 1341
HpyCH4V TGCA 6 cut(s) 373, 475, 524, 777, 1178, 1270
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
HpyF3I CTNAG 1 cut(s) 658
HpySE526I ACGT 4 cut(s) 156, 796, 1150, 1341
Hsp92II CATG 5 cut(s) 182, 788, 865, 1184, 1219
HspAI GCGC 2 cut(s) 84, 437
Kzo9I GATC 5 cut(s) 3, 579, 694, 749, 1133
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 3 cut(s) 755, 929, 1058
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 1078, 1165
MaeI CTAG 1 cut(s) 600
MaeII ACGT 4 cut(s) 156, 796, 1150, 1341
MaeIII GTNAC 3 cut(s) 505, 586, 1321
MalI GATC 5 cut(s) 5, 581, 696, 751, 1135
MbiI CCGCTC 1 cut(s) 758
MboI GATC 5 cut(s) 3, 579, 694, 749, 1133
MfeI CAATTG 2 cut(s) 420, 996
MflI RGATCY 2 cut(s) 694, 1133
MhlI GDGCHC 2 cut(s) 840, 934
MlyI GAGTC 1 cut(s) 871
MmeI TCCRAC 4 cut(s) 172, 1014, 1029, 1045
MnlI CCTC 7 cut(s) 127, 540, 544, 685, 704, 710, 985
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 4 cut(s) 153, 411, 906, 1115
MslI CAYNNNNRTG 2 cut(s) 641, 1306
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 1172, 1306
MspR9I CCNGG 4 cut(s) 495, 534, 833, 1056
MunI CAATTG 2 cut(s) 420, 996
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 4 cut(s) 495, 534, 833, 1056
MvnI CGCG 4 cut(s) 54, 63, 86, 439
MwoI GCNNNNNNNGC 4 cut(s) 28, 60, 462, 938
NdeII GATC 5 cut(s) 3, 579, 694, 749, 1133
NlaIII CATG 5 cut(s) 182, 788, 865, 1184, 1219
NlaIV GGNNCC 3 cut(s) 634, 837, 1053
NmeAIII GCCGAG 1 cut(s) 991
NmuCI GTSAC 1 cut(s) 505
PagI TCATGA 2 cut(s) 784, 861
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 5 cut(s) 305, 431, 788, 949, 1199
PinAI ACCGGT 1 cut(s) 1305
PkrI GCNGC 2 cut(s) 30, 1014
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
Ppu21I YACGTR 1 cut(s) 1151
PshBI ATTAAT 1 cut(s) 906
PsiI TTATAA 1 cut(s) 1296
Psp124BI GAGCTC 1 cut(s) 934
Psp6I CCWGG 4 cut(s) 493, 532, 831, 1054
PspGI CCWGG 4 cut(s) 493, 532, 831, 1054
PspN4I GGNNCC 3 cut(s) 634, 837, 1053
PspPI GGNCC 2 cut(s) 455, 1205
PsrI GAACNNNNNNTAC 2 cut(s) 1131, 1163
PsuI RGATCY 2 cut(s) 694, 1133
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 4 cut(s) 608, 765, 795, 1265
RsaNI GTAC 4 cut(s) 607, 764, 794, 1264
RseI CAYNNNNRTG 2 cut(s) 641, 1306
SacI GAGCTC 1 cut(s) 934
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 4 cut(s) 153, 411, 906, 1115
SatI GCNGC 2 cut(s) 29, 1013
Sau3AI GATC 5 cut(s) 3, 579, 694, 749, 1133
Sau96I GGNCC 2 cut(s) 455, 1205
ScaI AGTACT 1 cut(s) 1265
SchI GAGTC 1 cut(s) 871
ScrFI CCNGG 4 cut(s) 495, 534, 833, 1056
SduI GDGCHC 2 cut(s) 840, 934
SfaNI GCATC 2 cut(s) 1078, 1165
SfiI GGCCNNNNNGGCC 1 cut(s) 462
SinI GGWCC 1 cut(s) 1205
SmiMI CAYNNNNRTG 2 cut(s) 641, 1306
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
SsiI CCGC 5 cut(s) 52, 63, 86, 758, 1013
SspI AATATT 1 cut(s) 1189
SspMI CTAG 1 cut(s) 600
SstI GAGCTC 1 cut(s) 934
StyD4I CCNGG 4 cut(s) 493, 532, 831, 1054
TaaI ACNGT 2 cut(s) 848, 872
TaiI ACGT 4 cut(s) 159, 799, 1153, 1344
TaqI TCGA 3 cut(s) 429, 573, 977
TatI WGTACW 1 cut(s) 1263
TauI GCSGC 1 cut(s) 1015
TfiI GAWTC 5 cut(s) 305, 431, 788, 949, 1199
Tru1I TTAA 4 cut(s) 153, 411, 906, 1115
Tru9I TTAA 4 cut(s) 153, 411, 906, 1115
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 9 cut(s) 167, 315, 363, 659, 732, 773, 801, 878, 1326
TspRI CASTG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 1205
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 4 cut(s) 319, 555, 851, 1282
XcmI CCANNNNNNNNNTGG 1 cut(s) 1045
XmiI GTMKAC 1 cut(s) 816
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.