Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002082

Physical Location & Seq

Genomic Coordinates Forward (+)

1880380 .. 1882188

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1026000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTGCCTCTTCCAACGGATTATATTTTAGGAACAGGGGTTGTTATACTGGATGATTGTAATTTCCACGAATCTGTACATCTTGATAGTTTCAATGTTGACAGAACACTTACATTGATTGTTGGTGGATCTGAACTTACATTACAGGCAAAGCTGACATTTTCACAGGAATCACTTGGAAATATTACCAAAGAAGCAGGACCTCTTAGCATGACCTTCACAATACCTATAGTCAATGCTTCAAGGCTTCTGGTAAAGTACTTGCATATAACAAAGAAGTGGAAGAGCTACAATCCATATCGATGGGTGAGATATGCCACACACTCAAATTCCTACGTTGCTGGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006605 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006896 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0030117 GO:0030119 GO:0030124 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072657 GO:0090160 GO:0097708 GO:0098791 GO:0098796 GO:1903361 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

117

Amino Acids

13.02

Weight (kDa)

7.89

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	38 - 114	1.1e-12	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24550 AT4G24550 AT4G24550
fragaria_vesca	FvH4_2g39370 FvH4_2g39370 FvH4_5g35480 FvH4_5g35480 FvH4_5g35480
malus_domestica	MD08G1026000.v1.1 MD08G1196400.v1.1 MD15G1022700.v1.1 MD15G1384200.v1.1
prunus_persica	Prupe.1G374700_v2.0.a1 Prupe.1G374700_v2.0.a1 Prupe.1G530400_v2.0.a1 Prupe.1G530400_v2.0.a1
pyrus_communis	pycom08g02000 pycom08g16880 pycom15g01900 pycom15g34390
rosa_chinensis	RchiOBHm_Chr6g0301631 RchiOBHm_Chr7g0236861
rosa_laevigata	RLG00000001055 RLG00000011237
rosa_multiflora	Rmu_sc0002867.1_g000012 Rmu_sc0040036.1_g000001 Rmu_ssc0000452.1_g000016
rosa_roxburghii	Rroxscaffold_2G00122930 Rroxscaffold_2G00122940 Rroxscaffold_3G00224750 Rroxscaffold_7G00166580
rosa_rugosa	Rorug06G0307500 Rorug07G0300200 Rorug07G0300200
rosa_samantha	Rh6AG420300 Rh6BG426500 Rh6CG433300 Rh6DG419800 Rh7AG455200 Rh7BG426400 Rh7CG473900 Rh7DG443200
rosa_wichuraiana	Rw6G036340 Rw7G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	328
AfaI	GTAC	2 cut(s)	78, 260
AgsI	TTSAA	2 cut(s)	94, 243
AluBI	AGCT	2 cut(s)	154, 288
AluI	AGCT	2 cut(s)	154, 288
AlwI	GGATC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	200
BccI	CCATC	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmcAI	AGTACT	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	54
BseCI	ATCGAT	1 cut(s)	301
BseGI	GGATG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	301
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	128
BspDI	ATCGAT	1 cut(s)	301
BspPI	GGATC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	128
Bst6I	CTCTTC	2 cut(s)	15, 278
BstAUI	TGTACA	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	128
Bsu15I	ATCGAT	1 cut(s)	301
BsuTUI	ATCGAT	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	77, 259
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	3 cut(s)	154, 247, 288
CviKI_1	RGCY	3 cut(s)	154, 247, 288
CviQI	GTAC	2 cut(s)	77, 259
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	15, 278
EarI	CTCTTC	2 cut(s)	15, 278
Eco47I	GGWCC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	200
FaeI	CATG	1 cut(s)	214
FaiI	YATR	8 cut(s)	24, 47, 212, 230, 267, 269, 298, 315
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	71, 170
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	265
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	128
LguI	GCTCTTC	1 cut(s)	278
LpnPI	CCDG	7 cut(s)	21, 35, 131, 152, 183, 236, 327
MaeII	ACGT	1 cut(s)	336
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	1 cut(s)	295
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	2 cut(s)	61, 328
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	18, 213
MslI	CAYNNNNRTG	1 cut(s)	301
NdeII	GATC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	71, 170
PkrI	GCNGC	1 cut(s)	6
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	78, 260
RsaNI	GTAC	2 cut(s)	77, 259
RseI	CAYNNNNRTG	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	278
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	260
SetI	ASST	6 cut(s)	156, 205, 218, 229, 290, 339
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	301
Sse9I	AATT	2 cut(s)	61, 328
SspI	AATATT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	61, 328
TatI	WGTACW	2 cut(s)	76, 258
TfiI	GAWTC	2 cut(s)	71, 170
TseI	GCWGC	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	328
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.