K homology RNA-binding domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26000 |
| fragaria_vesca | FvH4_4g07200 |
| malus_domestica | MD13G1239500.v1.1 MD16G1248300.v1.1 |
| prunus_persica | Prupe.1G074800_v2.0.a1 |
| pyrus_communis | pycom16g20810 |
| rosa_chinensis | RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341 |
| rosa_laevigata | RLG00000009266 RLG00000030564 RLG00000030569 |
| rosa_multiflora | Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00344350 |
| rosa_rugosa | Rorug04G0017100 |
| rosa_samantha | Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600 |
| rosa_wichuraiana | Rw1G021120 Rw4G007800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 287, 1479 |
| Acc36I | ACCTGC | 1 cut(s) | 1294 |
| AccBSI | CCGCTC | 1 cut(s) | 1324 |
| AccII | CGCG | 2 cut(s) | 188, 900 |
| AciI | CCGC | 9 cut(s) | 6, 74, 87, 90, 186, 188, 1110, 1139, 1322 |
| AclWI | GGATC | 3 cut(s) | 562, 950, 963 |
| AcoI | YGGCCR | 2 cut(s) | 3, 200 |
| AcuI | CTGAAG | 1 cut(s) | 483 |
| AcvI | CACGTG | 1 cut(s) | 920 |
| AfaI | GTAC | 4 cut(s) | 963, 1188, 1284, 1361 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 70, 1419 |
| AflIII | ACRYGT | 3 cut(s) | 396, 436, 919 |
| AgsI | TTSAA | 4 cut(s) | 130, 476, 522, 1211 |
| AjiI | CACGTC | 1 cut(s) | 437 |
| AjnI | CCWGG | 4 cut(s) | 202, 211, 789, 982 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 687, 719 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 20, 52 |
| Alw21I | GWGCWC | 2 cut(s) | 316, 1334 |
| Alw26I | GTCTC | 3 cut(s) | 152, 299, 781 |
| AlwI | GGATC | 3 cut(s) | 562, 950, 963 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1454 |
| Ama87I | CYCGRG | 3 cut(s) | 906, 993, 1327 |
| AoxI | GGCC | 4 cut(s) | 3, 200, 209, 390 |
| ApeKI | GCWGC | 3 cut(s) | 149, 152, 632 |
| AseI | ATTAAT | 1 cut(s) | 534 |
| AspLEI | GCGC | 2 cut(s) | 116, 900 |
| AspS9I | GGNCC | 2 cut(s) | 335, 1391 |
| AsuHPI | GGTGA | 4 cut(s) | 227, 256, 290, 393 |
| AvaI | CYCGRG | 3 cut(s) | 906, 993, 1327 |
| AvaII | GGWCC | 2 cut(s) | 335, 1391 |
| AxyI | CCTNAGG | 1 cut(s) | 713 |
| BaeGI | GKGCMC | 1 cut(s) | 1346 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1005, 1038 |
| BalI | TGGCCA | 1 cut(s) | 202 |
| BamHI | GGATCC | 1 cut(s) | 955 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1099, 1131 |
| BauI | CACGAG | 1 cut(s) | 309 |
| BbrPI | CACGTG | 1 cut(s) | 920 |
| BbsI | GAAGAC | 1 cut(s) | 484 |
| Bbv12I | GWGCWC | 2 cut(s) | 316, 1334 |
| BbvCI | CCTCAGC | 1 cut(s) | 1299 |
| BbvI | GCAGC | 3 cut(s) | 136, 139, 619 |
| BccI | CCATC | 1 cut(s) | 326 |
| BciT130I | CCWGG | 4 cut(s) | 204, 213, 791, 984 |
| BclI | TGATCA | 1 cut(s) | 1147 |
| BcoDI | GTCTC | 3 cut(s) | 152, 299, 781 |
| BfaI | CTAG | 2 cut(s) | 767, 771 |
| BfmI | CTRYAG | 3 cut(s) | 570, 946, 1468 |
| BfoI | RGCGCY | 1 cut(s) | 117 |
| BfuAI | ACCTGC | 1 cut(s) | 1294 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 208 |
| BisI | GCNGC | 7 cut(s) | 6, 87, 90, 150, 153, 633, 1322 |
| BlpI | GCTNAGC | 2 cut(s) | 145, 1197 |
| BlsI | GCNGC | 7 cut(s) | 7, 88, 91, 151, 154, 634, 1323 |
| Bme1390I | CCNGG | 4 cut(s) | 204, 213, 791, 984 |
| Bme18I | GGWCC | 2 cut(s) | 335, 1391 |
| BmeT110I | CYCGRG | 3 cut(s) | 906, 993, 1327 |
| BmgBI | CACGTC | 1 cut(s) | 437 |
| BmgT120I | GGNCC | 2 cut(s) | 335, 1391 |
| BmiI | GGNNCC | 6 cut(s) | 37, 852, 882, 957, 1236, 1392 |
| BmrFI | CCNGG | 4 cut(s) | 204, 213, 791, 984 |
| BmrI | ACTGGG | 1 cut(s) | 1428 |
| BmsI | GCATC | 4 cut(s) | 366, 599, 1023, 1150 |
| BmuI | ACTGGG | 1 cut(s) | 1428 |
| BoxI | GACNNNNGTC | 1 cut(s) | 251 |
| BpiI | GAAGAC | 1 cut(s) | 484 |
| BpmI | CTGGAG | 1 cut(s) | 914 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1299 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 145, 1197 |
| BpuEI | CTTGAG | 1 cut(s) | 1167 |
| BsaAI | YACGTR | 1 cut(s) | 920 |
| BsaI | GGTCTC | 1 cut(s) | 781 |
| BsaJI | CCNNGG | 2 cut(s) | 186, 982 |
| BsaWI | WCCGGW | 1 cut(s) | 241 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 182, 212 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 70, 1419 |
| Bse118I | RCCGGY | 3 cut(s) | 70, 403, 1351 |
| Bse1I | ACTGG | 2 cut(s) | 1238, 1423 |
| Bse21I | CCTNAGG | 1 cut(s) | 713 |
| Bse3DI | GCAATG | 2 cut(s) | 92, 414 |
| BseBI | CCWGG | 4 cut(s) | 204, 213, 791, 984 |
| BseDI | CCNNGG | 2 cut(s) | 186, 982 |
| BseGI | GGATG | 2 cut(s) | 646, 1141 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 70, 1419 |
| BseMI | GCAATG | 2 cut(s) | 92, 414 |
| BseMII | CTCAG | 5 cut(s) | 42, 147, 1188, 1313, 1394 |
| BseNI | ACTGG | 2 cut(s) | 1238, 1423 |
| BseRI | GAGGAG | 3 cut(s) | 206, 317, 1287 |
| BseSI | GKGCMC | 1 cut(s) | 1346 |
| BseXI | GCAGC | 3 cut(s) | 136, 139, 619 |
| BseYI | CCCAGC | 1 cut(s) | 1384 |
| BsgI | GTGCAG | 2 cut(s) | 618, 1376 |
| Bsh1236I | CGCG | 2 cut(s) | 188, 900 |
| Bsh1285I | CGRYCG | 1 cut(s) | 355 |
| BshFI | GGCC | 4 cut(s) | 5, 202, 211, 392 |
| BsiEI | CGRYCG | 1 cut(s) | 355 |
| BsiHKAI | GWGCWC | 2 cut(s) | 316, 1334 |
| BsiHKCI | CYCGRG | 3 cut(s) | 906, 993, 1327 |
| BsiSI | CCGG | 4 cut(s) | 71, 242, 404, 1352 |
| BslFI | GGGAC | 1 cut(s) | 728 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 70, 1419 |
| BsmAI | GTCTC | 3 cut(s) | 152, 299, 781 |
| BsmFI | GGGAC | 1 cut(s) | 728 |
| BsnI | GGCC | 4 cut(s) | 5, 202, 211, 392 |
| Bso31I | GGTCTC | 1 cut(s) | 781 |
| BsoBI | CYCGRG | 3 cut(s) | 906, 993, 1327 |
| Bsp1286I | GDGCHC | 3 cut(s) | 316, 1334, 1346 |
| Bsp143I | GATC | 5 cut(s) | 234, 352, 554, 955, 1147 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 145, 1197 |
| BspACI | CCGC | 9 cut(s) | 6, 74, 87, 90, 186, 188, 1110, 1139, 1322 |
| BspANI | GGCC | 4 cut(s) | 5, 202, 211, 392 |
| BspCNI | CTCAG | 5 cut(s) | 43, 148, 1189, 1312, 1393 |
| BspFNI | CGCG | 2 cut(s) | 188, 900 |
| BspLI | GGNNCC | 6 cut(s) | 37, 852, 882, 957, 1236, 1392 |
| BspMI | ACCTGC | 1 cut(s) | 1294 |
| BspPI | GGATC | 3 cut(s) | 562, 950, 963 |
| BspTNI | GGTCTC | 1 cut(s) | 781 |
| BsrBI | CCGCTC | 1 cut(s) | 1324 |
| BsrDI | GCAATG | 2 cut(s) | 92, 414 |
| BsrFI | RCCGGY | 3 cut(s) | 70, 403, 1351 |
| BsrI | ACTGG | 2 cut(s) | 1238, 1423 |
| BssAI | RCCGGY | 3 cut(s) | 70, 403, 1351 |
| BssECI | CCNNGG | 2 cut(s) | 186, 982 |
| BssMI | GATC | 5 cut(s) | 234, 352, 554, 955, 1147 |
| BssSI | CACGAG | 1 cut(s) | 309 |
| Bst2BI | CACGAG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 4 cut(s) | 204, 213, 791, 984 |
| Bst4CI | ACNGT | 8 cut(s) | 35, 624, 739, 801, 950, 966, 1159, 1313 |
| Bst6I | CTCTTC | 3 cut(s) | 502, 606, 755 |
| BstBAI | YACGTR | 1 cut(s) | 920 |
| BstC8I | GCNNGC | 1 cut(s) | 528 |
| BstDEI | CTNAG | 9 cut(s) | 51, 145, 156, 713, 868, 1197, 1299, 1304, 1380 |
| BstDSI | CCRYGG | 1 cut(s) | 186 |
| BstF5I | GGATG | 2 cut(s) | 646, 1141 |
| BstFNI | CGCG | 2 cut(s) | 188, 900 |
| BstH2I | RGCGCY | 1 cut(s) | 117 |
| BstHHI | GCGC | 2 cut(s) | 116, 900 |
| BstKTI | GATC | 5 cut(s) | 237, 355, 557, 958, 1150 |
| BstMAI | GTCTC | 3 cut(s) | 152, 299, 781 |
| BstMBI | GATC | 5 cut(s) | 234, 352, 554, 955, 1147 |
| BstMCI | CGRYCG | 1 cut(s) | 355 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 208, 413, 695, 1088 |
| BstNI | CCWGG | 4 cut(s) | 204, 213, 791, 984 |
| BstNSI | RCATGY | 1 cut(s) | 400 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 251 |
| BstSCI | CCNGG | 4 cut(s) | 202, 211, 789, 982 |
| BstSFI | CTRYAG | 3 cut(s) | 570, 946, 1468 |
| BstSLI | GKGCMC | 1 cut(s) | 1346 |
| BstUI | CGCG | 2 cut(s) | 188, 900 |
| BstV1I | GCAGC | 3 cut(s) | 136, 139, 619 |
| BstV2I | GAAGAC | 1 cut(s) | 484 |
| BstX2I | RGATCY | 2 cut(s) | 554, 955 |
| BstYI | RGATCY | 2 cut(s) | 554, 955 |
| Bsu36I | CCTNAGG | 1 cut(s) | 713 |
| BsuRI | GGCC | 4 cut(s) | 5, 202, 211, 392 |
| BtgI | CCRYGG | 1 cut(s) | 186 |
| BtrI | CACGTC | 1 cut(s) | 437 |
| BtsCI | GGATG | 2 cut(s) | 646, 1141 |
| BtsI | GCAGTG | 1 cut(s) | 423 |
| BtsIMutI | CAGTG | 4 cut(s) | 88, 423, 507, 1164 |
| BveI | ACCTGC | 1 cut(s) | 1294 |
| Cac8I | GCNNGC | 1 cut(s) | 528 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1454 |
| CfoI | GCGC | 2 cut(s) | 116, 900 |
| Cfr10I | RCCGGY | 3 cut(s) | 70, 403, 1351 |
| Cfr13I | GGNCC | 2 cut(s) | 335, 1391 |
| Cfr42I | CCGCGG | 1 cut(s) | 189 |
| CseI | GACGC | 2 cut(s) | 279, 422 |
| Csp6I | GTAC | 4 cut(s) | 962, 1187, 1283, 1360 |
| CviAII | CATG | 2 cut(s) | 397, 1339 |
| CviQI | GTAC | 4 cut(s) | 962, 1187, 1283, 1360 |
| DdeI | CTNAG | 9 cut(s) | 51, 145, 156, 713, 868, 1197, 1299, 1304, 1380 |
| DpnI | GATC | 5 cut(s) | 236, 354, 556, 957, 1149 |
| DpnII | GATC | 5 cut(s) | 234, 352, 554, 955, 1147 |
| DraI | TTTAAA | 1 cut(s) | 675 |
| EaeI | YGGCCR | 2 cut(s) | 3, 200 |
| Eam1104I | CTCTTC | 3 cut(s) | 502, 606, 755 |
| EarI | CTCTTC | 3 cut(s) | 502, 606, 755 |
| Eco147I | AGGCCT | 1 cut(s) | 392 |
| Eco31I | GGTCTC | 1 cut(s) | 781 |
| Eco47I | GGWCC | 2 cut(s) | 335, 1391 |
| Eco57I | CTGAAG | 1 cut(s) | 483 |
| Eco72I | CACGTG | 1 cut(s) | 920 |
| Eco81I | CCTNAGG | 1 cut(s) | 713 |
| Eco88I | CYCGRG | 3 cut(s) | 906, 993, 1327 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1391 |
| EcoRII | CCWGG | 4 cut(s) | 202, 211, 789, 982 |
| FaeI | CATG | 2 cut(s) | 400, 1342 |
| FaqI | GGGAC | 1 cut(s) | 728 |
| FatI | CATG | 2 cut(s) | 396, 1338 |
| FauI | CCCGC | 1 cut(s) | 67 |
| FbaI | TGATCA | 1 cut(s) | 1147 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 87, 90, 150, 153, 633, 1322 |
| FokI | GGATG | 2 cut(s) | 653, 1128 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 87, 90, 150, 153, 633, 1322 |
| FspBI | CTAG | 2 cut(s) | 767, 771 |
| GlaI | GCGC | 2 cut(s) | 115, 899 |
| GluI | GCNGC | 7 cut(s) | 6, 87, 90, 150, 153, 633, 1322 |
| GsaI | CCCAGC | 1 cut(s) | 1388 |
| GsuI | CTGGAG | 1 cut(s) | 914 |
| HaeII | RGCGCY | 1 cut(s) | 117 |
| HaeIII | GGCC | 4 cut(s) | 5, 202, 211, 392 |
| HapII | CCGG | 4 cut(s) | 71, 242, 404, 1352 |
| HgaI | GACGC | 2 cut(s) | 279, 422 |
| HhaI | GCGC | 2 cut(s) | 116, 900 |
| Hin1II | CATG | 2 cut(s) | 400, 1342 |
| Hin6I | GCGC | 2 cut(s) | 114, 898 |
| HinP1I | GCGC | 2 cut(s) | 114, 898 |
| HincII | GTYRAC | 1 cut(s) | 730 |
| HindII | GTYRAC | 1 cut(s) | 730 |
| HindIII | AAGCTT | 1 cut(s) | 669 |
| HpaII | CCGG | 4 cut(s) | 71, 242, 404, 1352 |
| HphI | GGTGA | 4 cut(s) | 227, 256, 290, 393 |
| Hpy166II | GTNNAC | 2 cut(s) | 730, 913 |
| Hpy188I | TCNGA | 4 cut(s) | 257, 610, 1438, 1456 |
| Hpy8I | GTNNAC | 2 cut(s) | 730, 913 |
| Hpy99I | CGWCG | 2 cut(s) | 14, 1104 |
| HpyAV | CCTTC | 4 cut(s) | 175, 939, 1070, 1404 |
| HpyCH4III | ACNGT | 8 cut(s) | 35, 624, 739, 801, 950, 966, 1159, 1313 |
| HpyCH4IV | ACGT | 2 cut(s) | 436, 919 |
| HpyCH4V | TGCA | 8 cut(s) | 590, 635, 661, 826, 1036, 1055, 1289, 1357 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 208, 413, 695, 1088 |
| HpyF3I | CTNAG | 9 cut(s) | 51, 145, 156, 713, 868, 1197, 1299, 1304, 1380 |
| HpySE526I | ACGT | 2 cut(s) | 436, 919 |
| Hsp92II | CATG | 2 cut(s) | 400, 1342 |
| HspAI | GCGC | 2 cut(s) | 114, 898 |
| Ksp22I | TGATCA | 1 cut(s) | 1147 |
| KspI | CCGCGG | 1 cut(s) | 189 |
| Kzo9I | GATC | 5 cut(s) | 234, 352, 554, 955, 1147 |
| LmnI | GCTCC | 6 cut(s) | 257, 850, 895, 1079, 1112, 1329 |
| Lsp1109I | GCAGC | 3 cut(s) | 136, 139, 619 |
| LweI | GCATC | 4 cut(s) | 366, 599, 1023, 1150 |
| MaeI | CTAG | 2 cut(s) | 767, 771 |
| MaeII | ACGT | 2 cut(s) | 436, 919 |
| MaeIII | GTNAC | 5 cut(s) | 244, 278, 399, 1012, 1307 |
| MalI | GATC | 5 cut(s) | 236, 354, 556, 957, 1149 |
| MbiI | CCGCTC | 1 cut(s) | 1324 |
| MboI | GATC | 5 cut(s) | 234, 352, 554, 955, 1147 |
| MboII | GAAGA | 9 cut(s) | 304, 392, 484, 489, 623, 742, 806, 993, 1116 |
| MflI | RGATCY | 2 cut(s) | 554, 955 |
| MhlI | GDGCHC | 3 cut(s) | 316, 1334, 1346 |
| MlsI | TGGCCA | 1 cut(s) | 202 |
| MluCI | AATT | 3 cut(s) | 125, 535, 1206 |
| MluNI | TGGCCA | 1 cut(s) | 202 |
| MlyI | GAGTC | 4 cut(s) | 301, 908, 1144, 1265 |
| MmeI | TCCRAC | 2 cut(s) | 235, 685 |
| Mox20I | TGGCCA | 1 cut(s) | 202 |
| MscI | TGGCCA | 1 cut(s) | 202 |
| MseI | TTAA | 7 cut(s) | 342, 365, 534, 564, 674, 684, 1128 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1337 |
| Msp20I | TGGCCA | 1 cut(s) | 202 |
| MspA1I | CMGCKG | 2 cut(s) | 188, 1384 |
| MspI | CCGG | 4 cut(s) | 71, 242, 404, 1352 |
| MspR9I | CCNGG | 4 cut(s) | 204, 213, 791, 984 |
| MvaI | CCWGG | 4 cut(s) | 204, 213, 791, 984 |
| MvnI | CGCG | 2 cut(s) | 188, 900 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 208, 413, 695, 1088 |
| NdeII | GATC | 5 cut(s) | 234, 352, 554, 955, 1147 |
| NlaIII | CATG | 2 cut(s) | 400, 1342 |
| NlaIV | GGNNCC | 6 cut(s) | 37, 852, 882, 957, 1236, 1392 |
| NmuCI | GTSAC | 4 cut(s) | 244, 278, 399, 1012 |
| NspI | RCATGY | 1 cut(s) | 400 |
| PceI | AGGCCT | 1 cut(s) | 392 |
| PciI | ACATGT | 1 cut(s) | 396 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 18 |
| PfeI | GAWTC | 7 cut(s) | 17, 78, 130, 182, 679, 902, 1266 |
| PkrI | GCNGC | 7 cut(s) | 7, 88, 91, 151, 154, 634, 1323 |
| Ple19I | CGATCG | 1 cut(s) | 355 |
| PleI | GAGTC | 4 cut(s) | 301, 908, 1143, 1265 |
| PmaCI | CACGTG | 1 cut(s) | 920 |
| PmlI | CACGTG | 1 cut(s) | 920 |
| PpsI | GAGTC | 4 cut(s) | 301, 908, 1143, 1265 |
| Ppu21I | YACGTR | 1 cut(s) | 920 |
| PpuMI | RGGWCCY | 1 cut(s) | 1391 |
| PscI | ACATGT | 1 cut(s) | 396 |
| PshAI | GACNNNNGTC | 1 cut(s) | 251 |
| PshBI | ATTAAT | 1 cut(s) | 534 |
| PsiI | TTATAA | 2 cut(s) | 287, 1479 |
| Psp5II | RGGWCCY | 1 cut(s) | 1391 |
| Psp6I | CCWGG | 4 cut(s) | 202, 211, 789, 982 |
| PspCI | CACGTG | 1 cut(s) | 920 |
| PspFI | CCCAGC | 1 cut(s) | 1384 |
| PspGI | CCWGG | 4 cut(s) | 202, 211, 789, 982 |
| PspN4I | GGNNCC | 6 cut(s) | 37, 852, 882, 957, 1236, 1392 |
| PspPI | GGNCC | 2 cut(s) | 335, 1391 |
| PspPPI | RGGWCCY | 1 cut(s) | 1391 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1454 |
| PsuI | RGATCY | 2 cut(s) | 554, 955 |
| PvuI | CGATCG | 1 cut(s) | 355 |
| PvuII | CAGCTG | 1 cut(s) | 1384 |
| RsaI | GTAC | 4 cut(s) | 963, 1188, 1284, 1361 |
| RsaNI | GTAC | 4 cut(s) | 962, 1187, 1283, 1360 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1337 |
| SacII | CCGCGG | 1 cut(s) | 189 |
| SaqAI | TTAA | 7 cut(s) | 342, 365, 534, 564, 674, 684, 1128 |
| SatI | GCNGC | 7 cut(s) | 6, 87, 90, 150, 153, 633, 1322 |
| Sau3AI | GATC | 5 cut(s) | 234, 352, 554, 955, 1147 |
| Sau96I | GGNCC | 2 cut(s) | 335, 1391 |
| SchI | GAGTC | 4 cut(s) | 301, 908, 1144, 1265 |
| ScrFI | CCNGG | 4 cut(s) | 204, 213, 791, 984 |
| SduI | GDGCHC | 3 cut(s) | 316, 1334, 1346 |
| SfaNI | GCATC | 4 cut(s) | 366, 599, 1023, 1150 |
| SfcI | CTRYAG | 3 cut(s) | 570, 946, 1468 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 208 |
| Sfr303I | CCGCGG | 1 cut(s) | 189 |
| SgrBI | CCGCGG | 1 cut(s) | 189 |
| SinI | GGWCC | 2 cut(s) | 335, 1391 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1337 |
| SmlI | CTYRAG | 1 cut(s) | 1182 |
| SmoI | CTYRAG | 1 cut(s) | 1182 |
| Sse9I | AATT | 3 cut(s) | 125, 535, 1206 |
| SseBI | AGGCCT | 1 cut(s) | 392 |
| SsiI | CCGC | 9 cut(s) | 6, 74, 87, 90, 186, 188, 1110, 1139, 1322 |
| SspMI | CTAG | 2 cut(s) | 767, 771 |
| StuI | AGGCCT | 1 cut(s) | 392 |
| StyD4I | CCNGG | 4 cut(s) | 202, 211, 789, 982 |
| TaaI | ACNGT | 8 cut(s) | 35, 624, 739, 801, 950, 966, 1159, 1313 |
| TaiI | ACGT | 2 cut(s) | 439, 922 |
| TaqI | TCGA | 3 cut(s) | 753, 1102, 1269 |
| TasI | AATT | 3 cut(s) | 125, 535, 1206 |
| TatI | WGTACW | 3 cut(s) | 961, 1186, 1359 |
| TauI | GCSGC | 4 cut(s) | 8, 89, 92, 1324 |
| TfiI | GAWTC | 7 cut(s) | 17, 78, 130, 182, 679, 902, 1266 |
| Tru1I | TTAA | 7 cut(s) | 342, 365, 534, 564, 674, 684, 1128 |
| Tru9I | TTAA | 7 cut(s) | 342, 365, 534, 564, 674, 684, 1128 |
| TscAI | CASTG | 4 cut(s) | 88, 423, 507, 1164 |
| TseFI | GTSAC | 4 cut(s) | 244, 278, 399, 1012 |
| TseI | GCWGC | 3 cut(s) | 149, 152, 632 |
| Tsp45I | GTSAC | 4 cut(s) | 244, 278, 399, 1012 |
| TspDTI | ATGAA | 2 cut(s) | 72, 1207 |
| TspGWI | ACGGA | 3 cut(s) | 10, 889, 1088 |
| TspRI | CASTG | 4 cut(s) | 88, 423, 507, 1164 |
| VpaK11BI | GGWCC | 2 cut(s) | 335, 1391 |
| VspI | ATTAAT | 1 cut(s) | 534 |
| XceI | RCATGY | 1 cut(s) | 400 |
| XspI | CTAG | 2 cut(s) | 767, 771 |