Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

19067545 .. 19070535

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG103100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCACCGCCCAACCCTCCGAGAACGGCTCCGCCAAGGCTCCGGAACCCGACCCGCGACCCGAACCCGTCACCGAAGCCGCCACAACTGCCGCGCCCCACTCCGACCCGTCCACCACTACAATCGATAACAACCAAAATCGGAACCCCGACTCCGAATCCGCTCCTTCCGAGGCTCCGGCGATGACTTCCAGCAGCGATGCCGTGTCCGCCGCCGATAAAAGATGGCCGGGGTGGCCCGGCGACTGTGTTTTCCGGCTGATTGTGCCGGTTCTTAAGGTCGGGAGCATTATCGGCCGGAAAGGCGAGCTCATTAAGAAGATGTGTGAGGAGACAAGAGCTCGCATTCGTGTCCTTGACGGCGCCGCAGGGACTACTGATCGCATCGTGCTGATCTCCGGAAGGGAAGAGCCAGAGGCTCCTCTTTCCCCTGCAATGGATGCTGTAATAAGAGTATTCAAACGTGTCGCTGGATTATCTGAGAGTGCAGGTGAGGCAGAGTTGTCTGGTGCTGCTGGAGTTGCATTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTGTCCGAGTATTGTCTGGAGTAACAAAGCTCGTTTATGTCTTGACTTGCACTATAACACACAACCACGGTCGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

234

Amino Acids

24.48

Weight (kDa)

6.33

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	85 - 137	3.7e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	362
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	2 cut(s)	58, 95
AccIII	TCCGGA	2 cut(s)	43, 398
AclWI	GGATC	1 cut(s)	595
AcoI	YGGCCR	3 cut(s)	3, 227, 295
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	2 cut(s)	436, 544
AflII	CTTAAG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	460
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	3 cut(s)	310, 341, 655
AluI	AGCT	3 cut(s)	310, 341, 655
Alw21I	GWGCWC	2 cut(s)	312, 343
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	595
Aor13HI	TCCGGA	2 cut(s)	43, 398
AoxI	GGCC	4 cut(s)	3, 227, 236, 295
ApeKI	GCWGC	3 cut(s)	195, 512, 620
AseI	ATTAAT	2 cut(s)	567, 593
AspLEI	GCGC	2 cut(s)	97, 365
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	2 cut(s)	231, 240
AsuHPI	GGTGA	2 cut(s)	64, 503
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	2 cut(s)	312, 343
BarI	GAAGNNNNNNTAC	2 cut(s)	607, 639
Bbv12I	GWGCWC	2 cut(s)	312, 343
BbvI	GCAGC	3 cut(s)	207, 499, 607
BccI	CCATC	2 cut(s)	219, 542
BceAI	ACGGC	3 cut(s)	43, 188, 376
BcnI	CCSGG	2 cut(s)	231, 240
BcoDI	GTCTC	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	366
BfrI	CTTAAG	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	479
BglI	GCCNNNNNGGC	2 cut(s)	235, 303
BisI	GCNGC	7 cut(s)	81, 93, 196, 213, 366, 513, 621
BlsI	GCNGC	7 cut(s)	82, 94, 197, 214, 367, 514, 622
Bme1390I	CCNGG	2 cut(s)	231, 240
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	7 cut(s)	31, 42, 48, 146, 177, 364, 420
BmrFI	CCNGG	2 cut(s)	231, 240
BmsI	GCATC	4 cut(s)	190, 393, 430, 560
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	2 cut(s)	537, 663
BpuMI	CCSGG	2 cut(s)	231, 240
Bsa29I	ATCGAT	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	4 cut(s)	36, 171, 230, 691
BsaWI	WCCGGW	2 cut(s)	43, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 544
Bse118I	RCCGGY	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	441
BseAI	TCCGGA	2 cut(s)	43, 398
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	4 cut(s)	36, 171, 230, 691
BseGI	GGATG	3 cut(s)	445, 534, 551
BseLI	CCNNNNNNNGG	2 cut(s)	436, 544
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	1 cut(s)	471
BseRI	GAGGAG	2 cut(s)	344, 411
BseX3I	CGGCCG	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	207, 499, 607
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	2 cut(s)	58, 95
Bsh1285I	CGRYCG	2 cut(s)	298, 697
BshFI	GGCC	4 cut(s)	5, 229, 238, 297
BshNI	GGYRCC	1 cut(s)	362
BshVI	ATCGAT	1 cut(s)	126
BsiEI	CGRYCG	2 cut(s)	298, 697
BsiHKAI	GWGCWC	2 cut(s)	312, 343
BsiSI	CCGG	8 cut(s)	44, 179, 230, 240, 256, 269, 298, 399
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	436, 544
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	2 cut(s)	345, 524
BsnI	GGCC	4 cut(s)	5, 229, 238, 297
Bsp1286I	GDGCHC	2 cut(s)	312, 343
Bsp13I	TCCGGA	2 cut(s)	43, 398
Bsp143I	GATC	3 cut(s)	379, 393, 587
BspANI	GGCC	4 cut(s)	5, 229, 238, 297
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	126
BspEI	TCCGGA	2 cut(s)	43, 398
BspFNI	CGCG	2 cut(s)	58, 95
BspLI	GGNNCC	7 cut(s)	31, 42, 48, 146, 177, 364, 420
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	595
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	4 cut(s)	36, 171, 230, 691
BssMI	GATC	3 cut(s)	379, 393, 587
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	248, 695
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	363
BstAFI	CTTAAG	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	308, 343
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	691
BstF5I	GGATG	3 cut(s)	445, 534, 551
BstFNI	CGCG	2 cut(s)	58, 95
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	97, 365
BstKTI	GATC	3 cut(s)	382, 396, 590
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	3 cut(s)	379, 393, 587
BstMCI	CGRYCG	2 cut(s)	298, 697
BstMWI	GCNNNNNNNGC	9 cut(s)	89, 209, 235, 265, 294, 303, 440, 494, 521
BstSCI	CCNGG	2 cut(s)	229, 238
BstUI	CGCG	2 cut(s)	58, 95
BstV1I	GCAGC	3 cut(s)	207, 499, 607
BstZI	CGGCCG	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	4 cut(s)	5, 229, 238, 297
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	691
BtgZI	GCGATG	2 cut(s)	197, 213
BtsCI	GGATG	3 cut(s)	445, 534, 551
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	308, 343
CfoI	GCGC	2 cut(s)	97, 365
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	615
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	1 cut(s)	480
DinI	GGCGCC	1 cut(s)	364
DpnI	GATC	3 cut(s)	381, 395, 589
DpnII	GATC	3 cut(s)	379, 393, 587
EaeI	YGGCCR	3 cut(s)	3, 227, 295
EagI	CGGCCG	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	2 cut(s)	22, 199
Ecl136II	GAGCTC	2 cut(s)	310, 341
EclXI	CGGCCG	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	312, 343
Eco52I	CGGCCG	1 cut(s)	295
Eco53kI	GAGCTC	2 cut(s)	310, 341
EcoICRI	GAGCTC	2 cut(s)	310, 341
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	312, 343
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	36
FaiI	YATR	3 cut(s)	605, 663, 680
FaqI	GGGAC	1 cut(s)	385
FauI	CCCGC	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	7 cut(s)	81, 93, 196, 213, 366, 513, 621
FokI	GGATG	3 cut(s)	452, 521, 538
FriOI	GRGCYC	2 cut(s)	312, 343
Fsp4HI	GCNGC	7 cut(s)	81, 93, 196, 213, 366, 513, 621
GlaI	GCGC	2 cut(s)	96, 364
GluI	GCNGC	7 cut(s)	81, 93, 196, 213, 366, 513, 621
GsuI	CTGGAG	2 cut(s)	537, 663
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	4 cut(s)	5, 229, 238, 297
HapII	CCGG	8 cut(s)	44, 179, 230, 240, 256, 269, 298, 399
HhaI	GCGC	2 cut(s)	97, 365
Hin1I	GRCGYC	1 cut(s)	363
Hin6I	GCGC	2 cut(s)	95, 363
HinP1I	GCGC	2 cut(s)	95, 363
HincII	GTYRAC	1 cut(s)	698
HindII	GTYRAC	1 cut(s)	698
HinfI	GANTC	2 cut(s)	152, 158
HpaII	CCGG	8 cut(s)	44, 179, 230, 240, 256, 269, 298, 399
HphI	GGTGA	2 cut(s)	64, 503
Hpy166II	GTNNAC	2 cut(s)	114, 698
Hpy188I	TCNGA	7 cut(s)	22, 106, 144, 157, 172, 481, 632
Hpy188III	TCNNGA	5 cut(s)	44, 283, 399, 642, 667
Hpy8I	GTNNAC	2 cut(s)	114, 698
HpyAV	CCTTC	2 cut(s)	177, 396
HpyCH4III	ACNGT	2 cut(s)	248, 695
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	4 cut(s)	434, 488, 524, 675
HpyF10VI	GCNNNNNNNGC	9 cut(s)	89, 209, 235, 265, 294, 303, 440, 494, 521
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	463
Hsp92I	GRCGYC	1 cut(s)	363
HspAI	GCGC	2 cut(s)	95, 363
KasI	GGCGCC	1 cut(s)	362
Kpn2I	TCCGGA	2 cut(s)	43, 398
Kzo9I	GATC	3 cut(s)	379, 393, 587
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	6 cut(s)	35, 46, 169, 181, 285, 424
Lsp1109I	GCAGC	3 cut(s)	207, 499, 607
LweI	GCATC	4 cut(s)	190, 393, 430, 560
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	70, 646
MalI	GATC	3 cut(s)	381, 395, 589
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	3 cut(s)	379, 393, 587
MboII	GAAGA	2 cut(s)	331, 419
MhlI	GDGCHC	2 cut(s)	312, 343
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	568, 573
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	28, 166, 322, 409, 432, 487
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	2 cut(s)	43, 398
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	276, 315, 567, 572, 593, 703
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	620
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	8 cut(s)	44, 179, 230, 240, 256, 269, 298, 399
MspR9I	CCNGG	2 cut(s)	231, 240
Mva1269I	GAATGC	2 cut(s)	345, 524
MvnI	CGCG	2 cut(s)	58, 95
MwoI	GCNNNNNNNGC	9 cut(s)	89, 209, 235, 265, 294, 303, 440, 494, 521
NarI	GGCGCC	1 cut(s)	363
NciI	CCSGG	2 cut(s)	231, 240
NdeII	GATC	3 cut(s)	379, 393, 587
NlaIV	GGNNCC	7 cut(s)	31, 42, 48, 146, 177, 364, 420
NmuCI	GTSAC	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	402
PctI	GAATGC	2 cut(s)	345, 524
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	7 cut(s)	82, 94, 197, 214, 367, 514, 622
PleI	GAGTC	1 cut(s)	146
PluTI	GGCGCC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	146
PshBI	ATTAAT	2 cut(s)	567, 593
Psp124BI	GAGCTC	2 cut(s)	312, 343
PspN4I	GGNNCC	7 cut(s)	31, 42, 48, 146, 177, 364, 420
PspPI	GGNCC	1 cut(s)	237
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
SacI	GAGCTC	2 cut(s)	312, 343
SalI	GTCGAC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	6 cut(s)	276, 315, 567, 572, 593, 703
SatI	GCNGC	7 cut(s)	81, 93, 196, 213, 366, 513, 621
Sau3AI	GATC	3 cut(s)	379, 393, 587
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	231, 240
SduI	GDGCHC	2 cut(s)	312, 343
SetI	ASST	6 cut(s)	282, 312, 343, 466, 493, 657
SfaNI	GCATC	4 cut(s)	190, 393, 430, 560
SfiI	GGCCNNNNNGGCC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	568, 573
SspDI	GGCGCC	1 cut(s)	362
SstI	GAGCTC	2 cut(s)	312, 343
StyD4I	CCNGG	2 cut(s)	229, 238
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	248, 695
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	126, 697
TasI	AATT	2 cut(s)	568, 573
TauI	GCSGC	4 cut(s)	83, 95, 215, 368
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	6 cut(s)	276, 315, 567, 572, 593, 703
Tru9I	TTAA	6 cut(s)	276, 315, 567, 572, 593, 703
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	195, 512, 620
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	527
Vha464I	CTTAAG	1 cut(s)	275
VspI	ATTAAT	2 cut(s)	567, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XmiI	GTMKAC	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.