Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Forward (+)

16225472 .. 16227827

Gene Structure 2356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGCTTATGCAAACAGAGCAAATTCTTCTGTCTTATGCTGAGGACATTATTGGGGTTGAAGGAAGGAGTATTGAATTTATTCGTCGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAACTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTCTAGCAACCAGCAACAAGGATCAAATTTCAAGCAGCTATGGCAGGATGGATACCGGATTGAGCTCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAGTATCCTCGCTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

124

Amino Acids

13.24

Weight (kDa)

4.67

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	26 - 82	4.9e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	203
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	3 cut(s)	66, 119, 273
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	104, 119, 279
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	49, 285, 312
AluI	AGCT	3 cut(s)	49, 285, 312
Alw21I	GWGCWC	2 cut(s)	34, 314
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	3 cut(s)	66, 119, 273
Asp700I	GAANNNNTTC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	34, 314
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	27
BciVI	GTATCC	2 cut(s)	292, 370
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	2 cut(s)	292, 370
BisI	GCNGC	2 cut(s)	225, 283
BlsI	GCNGC	2 cut(s)	226, 284
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	142, 205
BmrFI	CCNGG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	300, 314
BseMII	CTCAG	3 cut(s)	59, 75, 338
BseXI	GCAGC	1 cut(s)	294
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	34, 314
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	34, 314
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	3 cut(s)	58, 76, 337
BspLI	GGNNCC	2 cut(s)	142, 205
BspPI	GGATC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	154
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	154, 190
Bst6I	CTCTTC	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	45, 84, 324
BstF5I	GGATG	2 cut(s)	300, 314
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 288
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	294
BsuI	GTATCC	2 cut(s)	292, 370
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	300, 314
BtsIMutI	CAGTG	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	155
CviJI	RGCY	6 cut(s)	21, 49, 143, 227, 285, 312
CviKI_1	RGCY	6 cut(s)	21, 49, 143, 227, 285, 312
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	45, 84, 324
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DrdI	GACNNNNNNGTC	1 cut(s)	21
DseDI	GACNNNNNNGTC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	314
FaiI	YATR	4 cut(s)	53, 81, 288, 338
FaqI	GGGAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	225, 283
FokI	GGATG	2 cut(s)	301, 307
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	225, 283
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	225, 283
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	238, 332
HpaI	GTTAAC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	12, 242
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	3 cut(s)	98, 102, 357
HpyCH4III	ACNGT	2 cut(s)	154, 190
HpyCH4V	TGCA	2 cut(s)	4, 55
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 288
HpyF3I	CTNAG	3 cut(s)	45, 84, 324
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	37, 140
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	62, 345
MhlI	GDGCHC	2 cut(s)	34, 314
MluCI	AATT	3 cut(s)	66, 119, 273
MnlI	CCTC	4 cut(s)	79, 217, 361, 373
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	2 cut(s)	149, 373
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	61, 288
NdeII	GATC	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	142, 205
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	238, 332
PkrI	GCNGC	2 cut(s)	226, 284
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	142, 205
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	149, 373
SatI	GCNGC	2 cut(s)	225, 283
Sau3AI	GATC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	34, 314
SetI	ASST	7 cut(s)	51, 178, 209, 219, 287, 314, 373
SfcI	CTRYAG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	66, 119, 273
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	154, 190
TasI	AATT	3 cut(s)	66, 119, 273
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	238, 332
Tru1I	TTAA	2 cut(s)	149, 373
Tru9I	TTAA	2 cut(s)	149, 373
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	3 cut(s)	66, 119, 273
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.