Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

10309206 .. 10313620

Gene Structure 4415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG124300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCCGGACATGGTCACTCTCTGTTACCAGGTGCTGGAGATTTTGCTTGGGTCCACAGATTACTCGACTTGGCGGACATTTGGACCCTCTGCTGCATCTTCGGTTTGTCCGATTTGCTCAATTAAAGTTACACGGGACATGTTAAGTCATATTACACTGCAACATGGGCACTTGTTCAAGATATCCTTTAAACCTGAAAGACGTCACAGGTTACGTAGGGTTGCTGTTCCTAATAGTCAAGCACTGTCTCTCCTTGGCCGGGATCTTCGTGAGGCTCATCTCCAGGAGCAGATGAAATTTCAAAATCTGTGCCGTGAGGCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGATTACGCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTAAAGGAAGGAGTATTGAATTTATTCGTCATAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTTATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTCTGGCAGGATGGATACCGGATTGAGGTCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAGTATCCTCGCTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

253

Amino Acids

27.7

Weight (kDa)

7.74

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	32 - 56	7.4e-07	Drought induced 19 protein (Di19), zinc-binding
KH_1	PF00013	147 - 211	8.4e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	408
AatII	GACGTC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	590
AccB7I	CCANNNNNTGG	2 cut(s)	34, 347
AciI	CCGC	2 cut(s)	73, 611
AclWI	GGATC	2 cut(s)	270, 663
AcoI	YGGCCR	2 cut(s)	256, 406
AcsI	RAATTY	4 cut(s)	296, 453, 506, 660
AcuI	CTGAAG	2 cut(s)	381, 726
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	4 cut(s)	34, 259, 347, 696
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	4 cut(s)	178, 302, 387, 506
AjnI	CCWGG	3 cut(s)	27, 282, 412
AluBI	AGCT	1 cut(s)	672
AluI	AGCT	1 cut(s)	672
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	270, 663
AlwNI	CAGNNNCTG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	256, 406
ApeKI	GCWGC	2 cut(s)	92, 669
ApoI	RAATTY	4 cut(s)	296, 453, 506, 660
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	51, 83
AsuC2I	CCSGG	1 cut(s)	260
AvaII	GGWCC	2 cut(s)	51, 83
BaeGI	GKGCMC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	421
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	79, 681
BccI	CCATC	2 cut(s)	349, 676
BceAI	ACGGC	2 cut(s)	297, 393
BciT130I	CCWGG	3 cut(s)	29, 284, 414
BciVI	GTATCC	2 cut(s)	679, 757
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	252
BfuI	GTATCC	2 cut(s)	679, 757
BisI	GCNGC	3 cut(s)	93, 612, 670
BlsI	GCNGC	3 cut(s)	94, 613, 671
Bme1390I	CCNGG	4 cut(s)	29, 260, 284, 414
Bme18I	GGWCC	2 cut(s)	51, 83
BmgT120I	GGNCC	2 cut(s)	51, 83
BmiI	GGNNCC	4 cut(s)	52, 85, 529, 592
BmrFI	CCNGG	4 cut(s)	29, 260, 284, 414
BmsI	GCATC	1 cut(s)	104
BpmI	CTGGAG	2 cut(s)	56, 266
Bpu10I	CCTNAGC	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	689
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 259, 347, 696
BseBI	CCWGG	3 cut(s)	29, 284, 414
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	3 cut(s)	341, 687, 701
BseLI	CCNNNNNNNGG	4 cut(s)	34, 259, 347, 696
BseMII	CTCAG	3 cut(s)	446, 462, 725
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	79, 681
BshFI	GGCC	2 cut(s)	258, 408
BshNI	GGYRCC	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	3 cut(s)	5, 259, 690
BslFI	GGGAC	2 cut(s)	149, 570
BslI	CCNNNNNNNGG	4 cut(s)	34, 259, 347, 696
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	149, 570
BsnI	GGCC	2 cut(s)	258, 408
Bsp1286I	GDGCHC	2 cut(s)	171, 421
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	262, 655
BspACI	CCGC	2 cut(s)	73, 611
BspANI	GGCC	2 cut(s)	258, 408
BspCNI	CTCAG	3 cut(s)	445, 463, 724
BspLI	GGNNCC	4 cut(s)	52, 85, 529, 592
BspPI	GGATC	2 cut(s)	270, 663
BspT107I	GGYRCC	1 cut(s)	590
BsrGI	TGTACA	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	262, 655
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	3 cut(s)	29, 284, 414
Bst4CI	ACNGT	3 cut(s)	246, 541, 577
Bst6I	CTCTTC	1 cut(s)	745
BstACI	GRCGYC	1 cut(s)	202
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	541
BstBAI	YACGTR	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	432, 471, 711
BstF5I	GGATG	3 cut(s)	341, 687, 701
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	2 cut(s)	265, 658
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	262, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 448, 675
BstNI	CCWGG	3 cut(s)	29, 284, 414
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	4 cut(s)	27, 258, 282, 412
BstSLI	GKGCMC	1 cut(s)	171
BstSNI	TACGTA	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	79, 681
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuI	GTATCC	2 cut(s)	679, 757
BsuRI	GGCC	2 cut(s)	258, 408
BtsCI	GGATG	3 cut(s)	341, 687, 701
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	3 cut(s)	155, 242, 582
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	51, 83
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	3 cut(s)	10, 139, 164
CviJI	RGCY	7 cut(s)	258, 275, 374, 408, 530, 614, 672
CviKI_1	RGCY	7 cut(s)	258, 275, 374, 408, 530, 614, 672
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	3 cut(s)	432, 471, 711
DpnI	GATC	2 cut(s)	264, 657
DpnII	GATC	2 cut(s)	262, 655
DraI	TTTAAA	1 cut(s)	190
DrdI	GACNNNNNNGTC	1 cut(s)	408
DseDI	GACNNNNNNGTC	1 cut(s)	408
EaeI	YGGCCR	2 cut(s)	256, 406
Eam1104I	CTCTTC	1 cut(s)	745
EarI	CTCTTC	1 cut(s)	745
EciI	GGCGGA	1 cut(s)	88
Eco105I	TACGTA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	51, 83
Eco57I	CTGAAG	2 cut(s)	381, 726
EcoRII	CCWGG	3 cut(s)	27, 282, 412
EcoRV	GATATC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	13, 142, 167
FaiI	YATR	9 cut(s)	11, 140, 150, 165, 363, 468, 519, 638, 725
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	2 cut(s)	149, 570
FatI	CATG	3 cut(s)	9, 138, 163
Fnu4HI	GCNGC	3 cut(s)	93, 612, 670
FokI	GGATG	3 cut(s)	328, 688, 694
Fsp4HI	GCNGC	3 cut(s)	93, 612, 670
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	3 cut(s)	93, 612, 670
GsuI	CTGGAG	2 cut(s)	56, 266
HaeIII	GGCC	2 cut(s)	258, 408
HapII	CCGG	3 cut(s)	5, 259, 690
HhaI	GCGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	13, 142, 167
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	2 cut(s)	329, 719
HpaI	GTTAAC	1 cut(s)	537
HpaII	CCGG	3 cut(s)	5, 259, 690
Hpy166II	GTNNAC	2 cut(s)	54, 537
Hpy188I	TCNGA	2 cut(s)	111, 435
Hpy188III	TCNNGA	5 cut(s)	178, 269, 348, 399, 629
Hpy8I	GTNNAC	2 cut(s)	54, 537
HpyAV	CCTTC	2 cut(s)	489, 744
HpyCH4III	ACNGT	3 cut(s)	246, 541, 577
HpyCH4IV	ACGT	2 cut(s)	202, 214
HpyCH4V	TGCA	3 cut(s)	95, 160, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 448, 675
HpyF3I	CTNAG	3 cut(s)	432, 471, 711
HpySE526I	ACGT	2 cut(s)	202, 214
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	13, 142, 167
HspAI	GCGC	1 cut(s)	320
KspAI	GTTAAC	1 cut(s)	537
Kzo9I	GATC	2 cut(s)	262, 655
LmnI	GCTCC	3 cut(s)	286, 424, 527
Lsp1109I	GCAGC	2 cut(s)	79, 681
LweI	GCATC	1 cut(s)	104
MabI	ACCWGGT	1 cut(s)	27
MaeII	ACGT	2 cut(s)	202, 214
MaeIII	GTNAC	6 cut(s)	13, 23, 127, 203, 210, 427
MalI	GATC	2 cut(s)	264, 657
MboI	GATC	2 cut(s)	262, 655
MboII	GAAGA	5 cut(s)	90, 257, 375, 387, 732
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	171, 421
MluCI	AATT	7 cut(s)	120, 296, 323, 453, 506, 570, 660
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	6 cut(s)	123, 143, 189, 489, 536, 760
MslI	CAYNNNNRTG	1 cut(s)	522
MspI	CCGG	3 cut(s)	5, 259, 690
MspR9I	CCNGG	4 cut(s)	29, 260, 284, 414
MunI	CAATTG	1 cut(s)	323
MvaI	CCWGG	3 cut(s)	29, 284, 414
MwoI	GCNNNNNNNGC	3 cut(s)	166, 448, 675
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	262, 655
NlaIII	CATG	3 cut(s)	13, 142, 167
NlaIV	GGNNCC	4 cut(s)	52, 85, 529, 592
NmuCI	GTSAC	2 cut(s)	13, 203
NspI	RCATGY	1 cut(s)	142
PciI	ACATGT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	2 cut(s)	329, 719
PflFI	GACNNNGTC	1 cut(s)	11
PflMI	CCANNNNNTGG	2 cut(s)	34, 347
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	94, 613, 671
Ppu21I	YACGTR	1 cut(s)	215
PscI	ACATGT	1 cut(s)	138
Psp6I	CCWGG	3 cut(s)	27, 282, 412
PspGI	CCWGG	3 cut(s)	27, 282, 412
PspN4I	GGNNCC	4 cut(s)	52, 85, 529, 592
PspPI	GGNCC	2 cut(s)	51, 83
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	6 cut(s)	123, 143, 189, 489, 536, 760
SatI	GCNGC	3 cut(s)	93, 612, 670
Sau3AI	GATC	2 cut(s)	262, 655
Sau96I	GGNCC	2 cut(s)	51, 83
ScrFI	CCNGG	4 cut(s)	29, 260, 284, 414
SduI	GDGCHC	2 cut(s)	171, 421
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	104
SinI	GGWCC	2 cut(s)	51, 83
SmiMI	CAYNNNNRTG	1 cut(s)	522
SnaBI	TACGTA	1 cut(s)	215
Sse9I	AATT	7 cut(s)	120, 296, 323, 453, 506, 570, 660
SsiI	CCGC	2 cut(s)	73, 611
StyD4I	CCNGG	4 cut(s)	27, 258, 282, 412
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	246, 541, 577
TaiI	ACGT	2 cut(s)	205, 217
TaqI	TCGA	1 cut(s)	65
TasI	AATT	7 cut(s)	120, 296, 323, 453, 506, 570, 660
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	2 cut(s)	329, 719
Tru1I	TTAA	6 cut(s)	123, 143, 189, 489, 536, 760
Tru9I	TTAA	6 cut(s)	123, 143, 189, 489, 536, 760
TscAI	CASTG	3 cut(s)	162, 249, 582
TseFI	GTSAC	2 cut(s)	13, 203
TseI	GCWGC	2 cut(s)	92, 669
Tsp45I	GTSAC	2 cut(s)	13, 203
TspDTI	ATGAA	2 cut(s)	308, 582
TspRI	CASTG	3 cut(s)	162, 249, 582
Tth111I	GACNNNGTC	1 cut(s)	11
Van91I	CCANNNNNTGG	2 cut(s)	34, 347
VpaK11BI	GGWCC	2 cut(s)	51, 83
XapI	RAATTY	4 cut(s)	296, 453, 506, 660
XceI	RCATGY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	510
ZraI	GACGTC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.